>MSA2_PLAFC (Q99317) Merozoite surface antigen 2 precursor (MSA-2) (Allelic|
           form 1)
          Length = 262

 Score = 36.2 bits (82), Expect = 0.021
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
 Frame = +3

Query: 72  NPTTNAAKCTPIVVNLEATRRRTNERTSEPSSLLACRSH*PHHQD*LTASKGKGKHPAPG 251
           +P+T A   TP       T       T++  +  +  S  P+H++  T  KGKG+   P 
Sbjct: 79  SPSTPATPATPATTTTTTT-------TNDAEASTSTSSENPNHKNAETNPKGKGEVQKPN 131

Query: 252 KRNGKKPN----QKFNRDRRSVPPTND 320
           + N +  N    Q+ ++ + +VPPT D
Sbjct: 132 QANKETQNNSNVQQDSQTKSNVPPTQD 158

>MSA2_PLAF7 (P50498) Merozoite surface antigen 2 precursor (MSA-2) (45 kDa|
           merozoite surface antigen)
          Length = 272

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +3

Query: 138 TNERTSEPSSLLACRSH*PHHQD*LTASKGKGKHPAPGKRNGKKPN----QKFNRDRRSV 305
           T   T++  +  +  S  P+H++  T  KGKG+   P + N +  N    Q+ ++ + +V
Sbjct: 104 TTTTTNDAEASTSTSSENPNHKNAETNPKGKGEVQEPNQANKETQNNSNVQQDSQTKSNV 163

Query: 306 PPTND 320
           PPT D
Sbjct: 164 PPTQD 168

>MSA2_PLAF8 (Q99320) Merozoite surface antigen 2 precursor (MSA-2) (Allelic|
           form 4)
          Length = 276

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +3

Query: 138 TNERTSEPSSLLACRSH*PHHQD*LTASKGKGKHPAPGKRNGKKPN----QKFNRDRRSV 305
           T   T++  +  +  S  P+H +  T  KGKG+   P + N +  N    Q+ ++ + +V
Sbjct: 108 TTTTTNDAEASTSTSSENPNHNNAETNPKGKGEVQKPNQANKETQNNSNVQQDSQTKSNV 167

Query: 306 PPTND 320
           PPT D
Sbjct: 168 PPTQD 172

>TILS_MANSM (Q65UE9) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 426

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 187 WLRQASNDDGSLVRSFVRRLVASKLTTIGVHF 92
           W+   SN+D S  R+F+R ++  K+ T   HF
Sbjct: 175 WIEDESNEDNSYDRNFLRNIILPKMKTRWAHF 206

>MSA2_PLAF6 (P50497) Merozoite surface antigen 2 precursor (MSA-2)|
          Length = 274

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
 Frame = +3

Query: 69  PNPTTNAAKCTPIVVNLEATRRRTNERTSEPSSLLACRSH*PHHQD*LTASKGKGKHPAP 248
           P      +  TP       T   T   T++  +  +  S  P+H +  T  KGKG+    
Sbjct: 84  PGADAEGSSSTPATTTTTTTTTTTTT-TNDAEASTSTSSENPNHNNAETNPKGKGEVQKS 142

Query: 249 GKRNGKKPN----QKFNRDRRSVPPTND 320
            + N +  N    Q+ ++ + +VPPT D
Sbjct: 143 NQANKETQNNSNVQQDSQTKSNVPPTQD 170

>K1196_HUMAN (Q96KM6) Zinc finger protein KIAA1196|
          Length = 892

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 192 PHH--QD*LTASKGKGKHPAPGKRNGKKPNQKFNRDR-RSVPPTNDD 323
           P H  QD L   K K K+ A GK+ G+KP ++   +    +PP  DD
Sbjct: 820 PKHRSQDSLVPKKEKKKNLAGGKKRGRKPKERTPEEPVAKLPPRRDD 866

>MSA2_PLAF1 (P50496) Merozoite surface antigen 2 precursor (MSA-2)|
          Length = 286

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +3

Query: 138 TNERTSEPSSLLACRSH*PHHQD*LTASKGKGKHPAPGKRNGKKPN----QKFNRDRRSV 305
           T   T++  +  +  S  P+H +  T  KG G    P + N +  N    Q+ ++ + +V
Sbjct: 118 TTTTTNDAEASTSTSSENPNHNNAKTNPKGNGGVQKPNQANKETQNNSNVQQDSQTKSNV 177

Query: 306 PPTND 320
           PPT D
Sbjct: 178 PPTQD 182

>TILS_PSESM (Q886M6) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 445

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 187 WLRQASNDDGSLVRSFVRRLVASKLTTIGVHFAA 86
           W+   SNDD    R+F+R  V   LT+I  H  A
Sbjct: 186 WVEDPSNDDQQFSRNFLRSQVLPLLTSIWPHATA 219

>TILS_ERWCT (Q6D8C5) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 440

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 187 WLRQASNDDGSLVRSFVRRLVASKLTTIGVHFAAFV 80
           W+   SN D    R+F+RR +  +LT    HF + V
Sbjct: 182 WIEDDSNQDERFDRNFLRRQILPRLTQRWPHFPSAV 217

>BCSA_XANAC (P58932) Cellulose synthase catalytic subunit [UDP-forming] (EC|
           2.4.1.12)
          Length = 729

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 16/31 (51%), Positives = 23/31 (74%)
 Frame = -2

Query: 276 GLVFSRSFFLAPGAFPFLYSLLINPDGVVSG 184
           GLV +RS+F A  A P+L+ LL+N  G+V+G
Sbjct: 504 GLV-ARSYFDAQIAKPYLFLLLLNVVGMVAG 533

>ATG9_NEUCR (Q7S4D7) Autophagy-related protein 9|
          Length = 908

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 225 GKGKHPAPGKRNGKKPNQKFNRDRRSVPPTNDD 323
           G   HPAPG   G+   Q+ + D+   PP + D
Sbjct: 132 GSRAHPAPGLSKGRTHQQRPHIDQELQPPLHSD 164

>BAZ1B_HUMAN (Q9UIG0) Bromodomain adjacent to zinc finger domain protein 1B|
            (Williams-Beuren syndrome chromosome region 9 protein)
            (WBRS9) (Williams syndrome transcription factor) (hWALP2)
          Length = 1483

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = +3

Query: 228  KGKHPA--PGKRNGKKPNQKFNRDRRS---VPPTNDDE 326
            +GKH    P  R+G++P +K +  RRS    PP +D E
Sbjct: 1289 RGKHSVIPPAARSGRRPGKKPHSTRRSQPKAPPVDDAE 1326

>RSRC1_MOUSE (Q9DBU6) Arginine/serine-rich coiled coil protein 1|
          Length = 334

 Score = 25.0 bits (53), Expect(2) = 5.9
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +1

Query: 136 ARTNERASHHRCLPAAATNHTIRIN*QRVKERESTRRQEKGTGKNQTRSSIEIADQSH 309
           +R++ER+SH R      T    R   +R    +  R +EK  GK++   SI+  D  +
Sbjct: 118 SRSSERSSHRR------TRSRSRDRDRRKVRDKEKREKEKDKGKDKEVHSIKRGDSGN 169



 Score = 21.6 bits (44), Expect(2) = 5.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 53  GTPRPTKPNHKRSKMHTNCC*LRGDQTTHERTNERA 160
           G  +P +    RSK  T     R    +H R++ER+
Sbjct: 89  GRGKPYRVQRSRSKSRTRRSRSRPRPRSHSRSSERS 124

>BRD7_MOUSE (O88665) Bromodomain-containing protein 7 (75 kDa bromodomain|
           protein)
          Length = 651

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = +3

Query: 162 SSLLACRSH*PHHQD*LTASKGKGKHPAPGKRNGKK----PNQKFNRDR 296
           SSL   RS    H+D     + KG+  APG+  G+K       K  RDR
Sbjct: 46  SSLFEDRSDHDKHKDRKRKKRKKGEKQAPGEEKGRKRRRVKEDKKKRDR 94

>ERCC4_CRIGR (Q9QYM7) DNA repair endonuclease XPF (EC 3.1.-.-) (DNA excision|
           repair protein ERCC-4)
          Length = 902

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 19/68 (27%), Positives = 27/68 (39%)
 Frame = +1

Query: 121 RRPDDARTNERASHHRCLPAAATNHTIRIN*QRVKERESTRRQEKGTGKNQTRSSIEIAD 300
           +RP D +  ERAS  +  P             + K+RE T  Q  GT +          D
Sbjct: 453 KRPKDTKNKERASTKKGAP-------------KRKKRELTLTQVMGTAEEPPEEGAAEED 499

Query: 301 QSHQRTTT 324
           Q  Q T++
Sbjct: 500 QQRQATSS 507

>HSP3_MURBR (P83213) Sperm protamine P3|
          Length = 54

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 222 KGKGKHPAPGKRNGKKPNQKFNRDRR 299
           KGKGK    GKR GK+  ++  R R+
Sbjct: 26  KGKGKGKKKGKRKGKRGGKRRRRRRK 51


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,052,871
Number of Sequences: 219361
Number of extensions: 757279
Number of successful extensions: 2408
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2406
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)