ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet74h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC122715.2| Homo sapiens chromosome 5 clone RP11-52C13, compl... 38 0.95
2gb|AC053466.6| Homo sapiens chromosome 10 clone RP11-491G3, comp... 36 3.8
3gb|AC127224.3| Mus musculus BAC clone RP24-498F21 from chromosom... 36 3.8
4gb|AC125254.9| Mus musculus chromosome 9, clone RP24-156I15, com... 36 3.8
5gb|AC174830.3| Myotis lucifugus clone CH235-234J19, complete seq... 36 3.8
6gb|AC068185.9| Homo sapiens chromosome 11, clone RP11-330I10, co... 36 3.8
7emb|BX005308.13| Zebrafish DNA sequence from clone CH211-129F5, ... 36 3.8

>gb|AC122715.2| Homo sapiens chromosome 5 clone RP11-52C13, complete sequence
          Length = 167763

 Score = 38.2 bits (19), Expect = 0.95
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 7      caaaatctggcaaacgata 25
              |||||||||||||||||||
Sbjct: 117059 caaaatctggcaaacgata 117041



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>gb|AC053466.6| Homo sapiens chromosome 10 clone RP11-491G3, complete sequence
          Length = 172885

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 3     acatcaaaatctggcaaa 20
             ||||||||||||||||||
Sbjct: 74782 acatcaaaatctggcaaa 74799



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>gb|AC127224.3| Mus musculus BAC clone RP24-498F21 from chromosome 10, complete
             sequence
          Length = 162143

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 4     catcaaaatctggcaaac 21
             ||||||||||||||||||
Sbjct: 87719 catcaaaatctggcaaac 87702



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>gb|AC125254.9| Mus musculus chromosome 9, clone RP24-156I15, complete sequence
          Length = 161503

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 3     acatcaaaatctggcaaa 20
             ||||||||||||||||||
Sbjct: 75663 acatcaaaatctggcaaa 75680



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>gb|AC174830.3| Myotis lucifugus clone CH235-234J19, complete sequence
          Length = 196835

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 8      aaaatctggcaaacgatagtag 29
              ||||||||||||| ||||||||
Sbjct: 180715 aaaatctggcaaatgatagtag 180694



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>gb|AC068185.9| Homo sapiens chromosome 11, clone RP11-330I10, complete sequence
          Length = 174189

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 3     acatcaaaatctggcaaa 20
             ||||||||||||||||||
Sbjct: 88333 acatcaaaatctggcaaa 88316



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>emb|BX005308.13| Zebrafish DNA sequence from clone CH211-129F5, complete sequence
          Length = 168462

 Score = 36.2 bits (18), Expect = 3.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 8      aaaatctggcaaacgata 25
              ||||||||||||||||||
Sbjct: 138913 aaaatctggcaaacgata 138896


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 220,970
Number of Sequences: 3902068
Number of extensions: 220970
Number of successful extensions: 54103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54092
Number of HSP's gapped (non-prelim): 11
length of query: 37
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 17
effective length of database: 17,155,003,908
effective search space: 291635066436
effective search space used: 291635066436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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