ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet74g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 42 0.59
2gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 2.3
3emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genom... 40 2.3
4gb|AC099778.2| Homo sapiens chromosome 3 clone RP11-708J19, comp... 40 2.3
5gb|AC112512.6| Homo sapiens 3 BAC RP11-717D12 (Roswell Park Canc... 40 2.3
6gb|AC093198.3| Drosophila melanogaster clone BACR03G24, complete... 38 9.2
7gb|AC006402.12| Drosophila melanogaster clone BACR08D17, complet... 38 9.2
8gb|AC183962.3| Pan troglodytes BAC clone CH251-711F5 from chromo... 38 9.2
9emb|AL137184.15| Human DNA sequence from clone RP3-401D24 on chr... 38 9.2
10gb|AC183417.2| Pan troglodytes BAC clone CH251-173K9 from chromo... 38 9.2
11gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 38 9.2
12ref|NM_136191.2| Drosophila melanogaster CG31688-RA (CG31688), mRNA 38 9.2
13gb|AC098825.3| Homo sapiens BAC clone RP11-506A18 from 4, comple... 38 9.2
14gb|AY075513.1| Drosophila melanogaster RE64176 full length cDNA 38 9.2
15gb|DQ088967.1| Homo sapiens calcium-sensing receptor (hypocalciu... 38 9.2
16emb|BX511232.6| Zebrafish DNA sequence from clone CH211-11K18 in... 38 9.2
17gb|AC068630.21| Homo sapiens 3 BAC RP11-289N10 (Roswell Park Can... 38 9.2
18gb|AE003666.6| Drosophila melanogaster chromosome 2L, section 75... 38 9.2
19dbj|AB095188.1| Cyanidioschyzon merolae gene for ribosomal prote... 38 9.2
20gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 38 9.2
21emb|AL359218.4|CNS05TEG Human chromosome 14 DNA sequence BAC R-5... 38 9.2
22dbj|AP003355.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 38 9.2
23emb|AL354926.17| Human DNA sequence from clone RP1-216J23 on chr... 38 9.2

>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 42.1 bits (21), Expect = 0.59
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 162    gagcaccgcgaccaggccgcc 182
              |||||||||||||||||||||
Sbjct: 688774 gagcaccgcgaccaggccgcc 688754



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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 24      ctgctctcgcaacaaaatac 43
               ||||||||||||||||||||
Sbjct: 1653479 ctgctctcgcaacaaaatac 1653498



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>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16
          Length = 348068

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   gcaccgcgaccaggccgcca 183
             ||||||||||||||||||||
Sbjct: 59649 gcaccgcgaccaggccgcca 59668



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>gb|AC099778.2| Homo sapiens chromosome 3 clone RP11-708J19, complete sequence
          Length = 212775

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 106    cacacagacggcaccaccac 125
              ||||||||||||||||||||
Sbjct: 167309 cacacagacggcaccaccac 167328



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>gb|AC112512.6| Homo sapiens 3 BAC RP11-717D12 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 176910

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   cacacagacggcaccaccac 125
             ||||||||||||||||||||
Sbjct: 58990 cacacagacggcaccaccac 59009



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>gb|AC093198.3| Drosophila melanogaster clone BACR03G24, complete sequence
          Length = 182901

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 162    gagcaccgcgaccaggccg 180
              |||||||||||||||||||
Sbjct: 131595 gagcaccgcgaccaggccg 131613



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>gb|AC006402.12| Drosophila melanogaster clone BACR08D17, complete sequence
          Length = 174735

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 162   gagcaccgcgaccaggccg 180
             |||||||||||||||||||
Sbjct: 70305 gagcaccgcgaccaggccg 70323



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>gb|AC183962.3| Pan troglodytes BAC clone CH251-711F5 from chromosome 6, complete
             sequence
          Length = 196547

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 148   acaaagaatgcacagagca 166
             |||||||||||||||||||
Sbjct: 20640 acaaagaatgcacagagca 20622



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>emb|AL137184.15| Human DNA sequence from clone RP3-401D24 on chromosome 6, complete
             sequence
          Length = 112124

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 148   acaaagaatgcacagagca 166
             |||||||||||||||||||
Sbjct: 33649 acaaagaatgcacagagca 33631



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>gb|AC183417.2| Pan troglodytes BAC clone CH251-173K9 from chromosome 6, complete
              sequence
          Length = 158234

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 148    acaaagaatgcacagagca 166
              |||||||||||||||||||
Sbjct: 124959 acaaagaatgcacagagca 124941



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 160     cagagcaccgcgaccaggccgcc 182
               |||||| ||||||||||||||||
Sbjct: 1869269 cagagctccgcgaccaggccgcc 1869247



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>ref|NM_136191.2| Drosophila melanogaster CG31688-RA (CG31688), mRNA
          Length = 3211

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 162  gagcaccgcgaccaggccg 180
            |||||||||||||||||||
Sbjct: 1178 gagcaccgcgaccaggccg 1196



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>gb|AC098825.3| Homo sapiens BAC clone RP11-506A18 from 4, complete sequence
          Length = 175758

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 150   aaagaatgcacagagcacc 168
             |||||||||||||||||||
Sbjct: 25899 aaagaatgcacagagcacc 25917



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>gb|AY075513.1| Drosophila melanogaster RE64176 full length cDNA
          Length = 3395

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 162  gagcaccgcgaccaggccg 180
            |||||||||||||||||||
Sbjct: 1178 gagcaccgcgaccaggccg 1196



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>gb|DQ088967.1| Homo sapiens calcium-sensing receptor (hypocalciuric hypercalcemia 1,
             severe neonatal hyperparathyroidism) (CASR) gene, complete
             cds
          Length = 106794

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 2     atggtaaataccttattatacac 24
             ||||||| |||||||||||||||
Sbjct: 21912 atggtaagtaccttattatacac 21890



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>emb|BX511232.6| Zebrafish DNA sequence from clone CH211-11K18 in linkage group 3,
             complete sequence
          Length = 171843

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 101   atattcacacagacggcac 119
             |||||||||||||||||||
Sbjct: 18533 atattcacacagacggcac 18515



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>gb|AC068630.21| Homo sapiens 3 BAC RP11-289N10 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 164161

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 2    atggtaaataccttattatacac 24
            ||||||| |||||||||||||||
Sbjct: 2332 atggtaagtaccttattatacac 2354



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>gb|AE003666.6| Drosophila melanogaster chromosome 2L, section 75 of 83 of the complete
              sequence
          Length = 318277

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 162    gagcaccgcgaccaggccg 180
              |||||||||||||||||||
Sbjct: 277322 gagcaccgcgaccaggccg 277340



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>dbj|AB095188.1| Cyanidioschyzon merolae gene for ribosomal protein S8, complete cds
          Length = 630

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 108 cacagacggcaccaccacg 126
           |||||||||||||||||||
Sbjct: 393 cacagacggcaccaccacg 411



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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 116     gcaccaccacgcatcacgt 134
               |||||||||||||||||||
Sbjct: 1410202 gcaccaccacgcatcacgt 1410220



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>emb|AL359218.4|CNS05TEG Human chromosome 14 DNA sequence BAC R-55G7 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 160718

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 37    aaaatacaaggttgatgaattct 59
             |||||||||| ||||||||||||
Sbjct: 83108 aaaatacaagtttgatgaattct 83130



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>dbj|AP003355.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1517D11
          Length = 153728

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 95    ccctcaatattcacacaga 113
             |||||||||||||||||||
Sbjct: 72168 ccctcaatattcacacaga 72186



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>emb|AL354926.17| Human DNA sequence from clone RP1-216J23 on chromosome 6, complete
             sequence
          Length = 163140

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 148   acaaagaatgcacagagca 166
             |||||||||||||||||||
Sbjct: 75147 acaaagaatgcacagagca 75129


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,271,965
Number of Sequences: 3902068
Number of extensions: 1271965
Number of successful extensions: 80452
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80228
Number of HSP's gapped (non-prelim): 224
length of query: 187
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 165
effective length of database: 17,147,199,772
effective search space: 2829287962380
effective search space used: 2829287962380
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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