| Clone Name | rbaet74g05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 0.10 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 catttcttgggtaaaaaactg 33 ||||||||||||||||||||| Sbjct: 30276636 catttcttgggtaaaaaactg 30276656
>emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12, complete sequence Length = 186142 Score = 42.1 bits (21), Expect = 0.10 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 catttcttgggtaaaaaactg 33 ||||||||||||||||||||| Sbjct: 172949 catttcttgggtaaaaaactg 172969
>emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083N12, complete sequence Length = 160989 Score = 42.1 bits (21), Expect = 0.10 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 catttcttgggtaaaaaactg 33 ||||||||||||||||||||| Sbjct: 26532 catttcttgggtaaaaaactg 26552
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 38.2 bits (19), Expect = 1.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 tttcttgggtaaaaaactg 33 ||||||||||||||||||| Sbjct: 2416828 tttcttgggtaaaaaactg 2416846
>emb|BX247879.5| Zebrafish DNA sequence from clone CH211-195N15, complete sequence Length = 184509 Score = 38.2 bits (19), Expect = 1.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 acatttcttgggtaaaaaa 30 ||||||||||||||||||| Sbjct: 28663 acatttcttgggtaaaaaa 28645
>gb|AC121108.12| Mus musculus chromosome 3, clone RP24-417H10, complete sequence Length = 184753 Score = 38.2 bits (19), Expect = 1.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 11 aacatttcttgggtaaaaaactg 33 |||||||||||||||||| |||| Sbjct: 128372 aacatttcttgggtaaaatactg 128394
>gb|AC150387.2| Branchiostoma floridae clone CH302-103N24, complete sequence Length = 193376 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 3 aacgggaaaacatttctt 20 |||||||||||||||||| Sbjct: 27023 aacgggaaaacatttctt 27040
>ref|NM_134189.2| Mus musculus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (Galnt10), mRNA Length = 4725 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 31 ctgggggcatcagctgcc 48 |||||||||||||||||| Sbjct: 784 ctgggggcatcagctgcc 801
>gb|AC024826.1| Caenorhabditis elegans cosmid Y55F3AM, complete sequence Length = 107705 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 15 tttcttgggtaaaaaact 32 |||||||||||||||||| Sbjct: 33136 tttcttgggtaaaaaact 33119
>emb|CR538722.1| M.truncatula DNA sequence from clone MTH2-11A20 on chromosome 3, complete sequence Length = 118829 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 aaaaaactgggggcatca 42 |||||||||||||||||| Sbjct: 112169 aaaaaactgggggcatca 112186
>emb|AL008723.8|HS90G24 Human DNA sequence from clone RP1-90G24 on chromosome 22 Contains the 5' end of a novel gene, the RFPL2 gene for ret finger protein-like 2, a Immunoglobulin Lambda Light Chain C region (IGLC) pseudogene (IGLCOR22-1), the SLC5A4 gene for solute carrier family 5 (low affinity glucose cotransporter), member 4 and a pseudogene similar to part of cleavage and polyadenylation specific factor 1, 160kDa (CPSF1), complete sequence Length = 154414 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 aaaactgggggcatcagc 44 |||||||||||||||||| Sbjct: 44652 aaaactgggggcatcagc 44669
>gb|AC109542.6| Rattus norvegicus 1 BAC CH230-270O15 (Children's Hospital Oakland Research Institute) complete sequence Length = 246913 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 18 cttgggtaaaaaactggg 35 |||||||||||||||||| Sbjct: 119983 cttgggtaaaaaactggg 119966
>gb|BC060617.1| Mus musculus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10, mRNA (cDNA clone MGC:79216 IMAGE:6836791), complete cds Length = 4708 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 31 ctgggggcatcagctgcc 48 |||||||||||||||||| Sbjct: 767 ctgggggcatcagctgcc 784
>emb|AL662868.15| Mouse DNA sequence from clone RP23-144P24 on chromosome 11 Contains three novel genes, the 5' end of the Galnt9 gene for UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 9 and a CpG island, complete sequence Length = 198647 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 31 ctgggggcatcagctgcc 48 |||||||||||||||||| Sbjct: 195228 ctgggggcatcagctgcc 195245
>dbj|AK143714.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched library, clone:F430012C15 product:UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10, full insert sequence Length = 3090 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 31 ctgggggcatcagctgcc 48 |||||||||||||||||| Sbjct: 615 ctgggggcatcagctgcc 632
>dbj|AK159362.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420018F21 product:UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10, full insert sequence Length = 3257 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 31 ctgggggcatcagctgcc 48 |||||||||||||||||| Sbjct: 782 ctgggggcatcagctgcc 799
>dbj|AK162424.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430003F12 product:UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10, full insert sequence Length = 3263 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 31 ctgggggcatcagctgcc 48 |||||||||||||||||| Sbjct: 784 ctgggggcatcagctgcc 801
>dbj|AK033515.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched library, clone:9030417M10 product:UDP-GALNAC:POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE T9 (EC 2.4.1.41) homolog [Rattus norvegicus], full insert sequence Length = 2937 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 31 ctgggggcatcagctgcc 48 |||||||||||||||||| Sbjct: 442 ctgggggcatcagctgcc 459
>gb|AC093894.2| Homo sapiens BAC clone RP11-714E5 from 2, complete sequence Length = 105489 Score = 36.2 bits (18), Expect = 6.4 Identities = 21/22 (95%) Strand = Plus / Minus Query: 11 aacatttcttgggtaaaaaact 32 |||||||||||||| ||||||| Sbjct: 60143 aacatttcttgggtcaaaaact 60122
>gb|AC106870.4| Homo sapiens BAC clone RP11-223F18 from 2, complete sequence Length = 143441 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 aaaaaactgggggcatca 42 |||||||||||||||||| Sbjct: 66438 aaaaaactgggggcatca 66455
>emb|AL691499.8| Mouse DNA sequence from clone RP23-45O6 on chromosome X, complete sequence Length = 179370 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 ggaacgggaaaacatttc 18 |||||||||||||||||| Sbjct: 110382 ggaacgggaaaacatttc 110365
>emb|AL121857.6|CNS01DSO Human chromosome 14 DNA sequence BAC R-158A24 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 171757 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 7 ggaaaacatttcttgggt 24 |||||||||||||||||| Sbjct: 15447 ggaaaacatttcttgggt 15430
>emb|CT485607.8| Mouse DNA sequence from clone RP23-157B3 on chromosome 9, complete sequence Length = 197959 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 6 gggaaaacatttcttggg 23 |||||||||||||||||| Sbjct: 47144 gggaaaacatttcttggg 47127
>emb|AL079304.3|CNS00M8L Human chromosome 14 DNA sequence BAC R-537P22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 162573 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 7 ggaaaacatttcttgggt 24 |||||||||||||||||| Sbjct: 63049 ggaaaacatttcttgggt 63032 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 465,829 Number of Sequences: 3902068 Number of extensions: 465829 Number of successful extensions: 123172 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 123071 Number of HSP's gapped (non-prelim): 101 length of query: 49 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 29 effective length of database: 17,155,003,908 effective search space: 497495113332 effective search space used: 497495113332 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)