ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet74g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.10
2emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4,... 42 0.10
3emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4,... 42 0.10
4gb|CP000302.1| Shewanella denitrificans OS217, complete genome 38 1.6
5emb|BX247879.5| Zebrafish DNA sequence from clone CH211-195N15, ... 38 1.6
6gb|AC121108.12| Mus musculus chromosome 3, clone RP24-417H10, co... 38 1.6
7gb|AC150387.2| Branchiostoma floridae clone CH302-103N24, comple... 36 6.4
8ref|NM_134189.2| Mus musculus UDP-N-acetyl-alpha-D-galactosamine... 36 6.4
9gb|AC024826.1| Caenorhabditis elegans cosmid Y55F3AM, complete s... 36 6.4
10emb|CR538722.1| M.truncatula DNA sequence from clone MTH2-11A20 ... 36 6.4
11emb|AL008723.8|HS90G24 Human DNA sequence from clone RP1-90G24 o... 36 6.4
12gb|AC109542.6| Rattus norvegicus 1 BAC CH230-270O15 (Children's ... 36 6.4
13gb|BC060617.1| Mus musculus UDP-N-acetyl-alpha-D-galactosamine:p... 36 6.4
14emb|AL662868.15| Mouse DNA sequence from clone RP23-144P24 on ch... 36 6.4
15dbj|AK143714.1| Mus musculus 6 days neonate spleen cDNA, RIKEN f... 36 6.4
16dbj|AK159362.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 36 6.4
17dbj|AK162424.1| Mus musculus 12 days embryo embryonic body betwe... 36 6.4
18dbj|AK033515.1| Mus musculus adult male colon cDNA, RIKEN full-l... 36 6.4
19gb|AC093894.2| Homo sapiens BAC clone RP11-714E5 from 2, complet... 36 6.4
20gb|AC106870.4| Homo sapiens BAC clone RP11-223F18 from 2, comple... 36 6.4
21emb|AL691499.8| Mouse DNA sequence from clone RP23-45O6 on chrom... 36 6.4
22emb|AL121857.6|CNS01DSO Human chromosome 14 DNA sequence BAC R-1... 36 6.4
23emb|CT485607.8| Mouse DNA sequence from clone RP23-157B3 on chro... 36 6.4
24emb|AL079304.3|CNS00M8L Human chromosome 14 DNA sequence BAC R-5... 36 6.4

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 0.10
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 13       catttcttgggtaaaaaactg 33
                |||||||||||||||||||||
Sbjct: 30276636 catttcttgggtaaaaaactg 30276656



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>emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12,
              complete sequence
          Length = 186142

 Score = 42.1 bits (21), Expect = 0.10
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 13     catttcttgggtaaaaaactg 33
              |||||||||||||||||||||
Sbjct: 172949 catttcttgggtaaaaaactg 172969



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>emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083N12,
             complete sequence
          Length = 160989

 Score = 42.1 bits (21), Expect = 0.10
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 13    catttcttgggtaaaaaactg 33
             |||||||||||||||||||||
Sbjct: 26532 catttcttgggtaaaaaactg 26552



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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 15      tttcttgggtaaaaaactg 33
               |||||||||||||||||||
Sbjct: 2416828 tttcttgggtaaaaaactg 2416846



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>emb|BX247879.5| Zebrafish DNA sequence from clone CH211-195N15, complete sequence
          Length = 184509

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 12    acatttcttgggtaaaaaa 30
             |||||||||||||||||||
Sbjct: 28663 acatttcttgggtaaaaaa 28645



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>gb|AC121108.12| Mus musculus chromosome 3, clone RP24-417H10, complete sequence
          Length = 184753

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 11     aacatttcttgggtaaaaaactg 33
              |||||||||||||||||| ||||
Sbjct: 128372 aacatttcttgggtaaaatactg 128394



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>gb|AC150387.2| Branchiostoma floridae clone CH302-103N24, complete sequence
          Length = 193376

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 3     aacgggaaaacatttctt 20
             ||||||||||||||||||
Sbjct: 27023 aacgggaaaacatttctt 27040



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>ref|NM_134189.2| Mus musculus UDP-N-acetyl-alpha-D-galactosamine:polypeptide
           N-acetylgalactosaminyltransferase 10 (Galnt10), mRNA
          Length = 4725

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 31  ctgggggcatcagctgcc 48
           ||||||||||||||||||
Sbjct: 784 ctgggggcatcagctgcc 801



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>gb|AC024826.1| Caenorhabditis elegans cosmid Y55F3AM, complete sequence
          Length = 107705

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 15    tttcttgggtaaaaaact 32
             ||||||||||||||||||
Sbjct: 33136 tttcttgggtaaaaaact 33119



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>emb|CR538722.1| M.truncatula DNA sequence from clone MTH2-11A20 on chromosome 3, complete
              sequence
          Length = 118829

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 25     aaaaaactgggggcatca 42
              ||||||||||||||||||
Sbjct: 112169 aaaaaactgggggcatca 112186



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>emb|AL008723.8|HS90G24 Human DNA sequence from clone RP1-90G24 on chromosome 22 Contains the
             5' end of a novel gene, the RFPL2 gene for ret finger
             protein-like 2, a Immunoglobulin Lambda Light Chain C
             region (IGLC) pseudogene (IGLCOR22-1), the SLC5A4 gene for
             solute carrier family 5 (low affinity glucose
             cotransporter), member 4 and a pseudogene similar to part
             of cleavage and polyadenylation specific factor 1, 160kDa
             (CPSF1), complete sequence
          Length = 154414

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 27    aaaactgggggcatcagc 44
             ||||||||||||||||||
Sbjct: 44652 aaaactgggggcatcagc 44669



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>gb|AC109542.6| Rattus norvegicus 1 BAC CH230-270O15 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 246913

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 18     cttgggtaaaaaactggg 35
              ||||||||||||||||||
Sbjct: 119983 cttgggtaaaaaactggg 119966



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>gb|BC060617.1| Mus musculus UDP-N-acetyl-alpha-D-galactosamine:polypeptide
           N-acetylgalactosaminyltransferase 10, mRNA (cDNA clone
           MGC:79216 IMAGE:6836791), complete cds
          Length = 4708

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 31  ctgggggcatcagctgcc 48
           ||||||||||||||||||
Sbjct: 767 ctgggggcatcagctgcc 784



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>emb|AL662868.15| Mouse DNA sequence from clone RP23-144P24 on chromosome 11 Contains three
              novel genes, the 5' end of the Galnt9 gene for
              UDP-N-acetyl-alpha-D-galactosamine: polypeptide
              N-acetylgalactosaminyltransferase 9 and a CpG island,
              complete sequence
          Length = 198647

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 31     ctgggggcatcagctgcc 48
              ||||||||||||||||||
Sbjct: 195228 ctgggggcatcagctgcc 195245



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>dbj|AK143714.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched
           library, clone:F430012C15
           product:UDP-N-acetyl-alpha-D-galactosamine:polypeptide
           N-acetylgalactosaminyltransferase 10, full insert
           sequence
          Length = 3090

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 31  ctgggggcatcagctgcc 48
           ||||||||||||||||||
Sbjct: 615 ctgggggcatcagctgcc 632



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>dbj|AK159362.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
           library, clone:I420018F21
           product:UDP-N-acetyl-alpha-D-galactosamine:polypeptide
           N-acetylgalactosaminyltransferase 10, full insert
           sequence
          Length = 3257

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 31  ctgggggcatcagctgcc 48
           ||||||||||||||||||
Sbjct: 782 ctgggggcatcagctgcc 799



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>dbj|AK162424.1| Mus musculus 12 days embryo embryonic body between diaphragm region
           and neck cDNA, RIKEN full-length enriched library,
           clone:9430003F12
           product:UDP-N-acetyl-alpha-D-galactosamine:polypeptide
           N-acetylgalactosaminyltransferase 10, full insert
           sequence
          Length = 3263

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 31  ctgggggcatcagctgcc 48
           ||||||||||||||||||
Sbjct: 784 ctgggggcatcagctgcc 801



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>dbj|AK033515.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched
           library, clone:9030417M10 product:UDP-GALNAC:POLYPEPTIDE
           N-ACETYLGALACTOSAMINYLTRANSFERASE T9 (EC 2.4.1.41)
           homolog [Rattus norvegicus], full insert sequence
          Length = 2937

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 31  ctgggggcatcagctgcc 48
           ||||||||||||||||||
Sbjct: 442 ctgggggcatcagctgcc 459



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>gb|AC093894.2| Homo sapiens BAC clone RP11-714E5 from 2, complete sequence
          Length = 105489

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 11    aacatttcttgggtaaaaaact 32
             |||||||||||||| |||||||
Sbjct: 60143 aacatttcttgggtcaaaaact 60122



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>gb|AC106870.4| Homo sapiens BAC clone RP11-223F18 from 2, complete sequence
          Length = 143441

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 25    aaaaaactgggggcatca 42
             ||||||||||||||||||
Sbjct: 66438 aaaaaactgggggcatca 66455



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>emb|AL691499.8| Mouse DNA sequence from clone RP23-45O6 on chromosome X, complete
              sequence
          Length = 179370

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 1      ggaacgggaaaacatttc 18
              ||||||||||||||||||
Sbjct: 110382 ggaacgggaaaacatttc 110365



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>emb|AL121857.6|CNS01DSO Human chromosome 14 DNA sequence BAC R-158A24 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 171757

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 7     ggaaaacatttcttgggt 24
             ||||||||||||||||||
Sbjct: 15447 ggaaaacatttcttgggt 15430



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>emb|CT485607.8| Mouse DNA sequence from clone RP23-157B3 on chromosome 9, complete
             sequence
          Length = 197959

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 6     gggaaaacatttcttggg 23
             ||||||||||||||||||
Sbjct: 47144 gggaaaacatttcttggg 47127



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>emb|AL079304.3|CNS00M8L Human chromosome 14 DNA sequence BAC R-537P22 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 162573

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 7     ggaaaacatttcttgggt 24
             ||||||||||||||||||
Sbjct: 63049 ggaaaacatttcttgggt 63032


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 465,829
Number of Sequences: 3902068
Number of extensions: 465829
Number of successful extensions: 123172
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123071
Number of HSP's gapped (non-prelim): 101
length of query: 49
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 29
effective length of database: 17,155,003,908
effective search space: 497495113332
effective search space used: 497495113332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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