ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet74f12 |
|---|---|
| Clone Library Name | barley_pub |
>ZFP26_MOUSE (P10076) Zinc finger protein 26 (Zfp-26) (mKR3 protein) (Fragment)| Length = 428 Score = 30.0 bits (66), Expect = 1.6 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 6/57 (10%) Frame = -3 Query: 275 PTTCTVCAVTMIYSRCVALGWRVETSLNPEVYLGWKCS-CY----LHSGLV-HLLYH 123 P C VCA T S C+ +R+ T + P +KC+ C+ SGL H+L H Sbjct: 9 PFRCKVCARTFRNSSCLKTNFRIHTGIKP-----YKCNYCWKAFTARSGLTKHVLIH 60
>EFNA3_HUMAN (P52797) Ephrin-A3 precursor (EPH-related receptor tyrosine kinase| ligand 3) (LERK-3) (EHK1 ligand) (EHK1-L) (EFL-2) Length = 238 Score = 28.5 bits (62), Expect = 4.6 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = -2 Query: 276 THDLYCMCCNHDLFPLCCTRLESGDKPEP 190 TH+L+ C +F C + SG+KP P Sbjct: 151 THNLHWKCLRMKVFVCCASTSHSGEKPVP 179
>EFNA3_MOUSE (O08545) Ephrin-A3 precursor (EPH-related receptor tyrosine kinase| ligand 3) (LERK-3) (EHK1 ligand) (EHK1-L) (Fragment) Length = 187 Score = 28.5 bits (62), Expect = 4.6 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = -2 Query: 276 THDLYCMCCNHDLFPLCCTRLESGDKPEP 190 TH+L+ C +F C + SG+KP P Sbjct: 100 THNLHWKCLRMKVFVCCASTSHSGEKPVP 128
>GLMM_PARUW (Q6MBL8) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 457 Score = 28.1 bits (61), Expect = 6.1 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = +3 Query: 75 PSVPDSSLSIGRKHQSVIQKMNKSRVKIARTLPAKVY 185 P VP+ +L++GR ++ ++ KSRV I + Y Sbjct: 23 PMVPEIALALGRAAGQLLSRLGKSRVVIGKDTRLSCY 59
>YCHJ_SALTY (Q8ZP43) UPF0225 protein ychJ| Length = 152 Score = 27.7 bits (60), Expect = 7.9 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = -2 Query: 261 CMCCNHDLFPLCCTRLESGDKPEP 190 C C + D + LCC R+ SG++ P Sbjct: 5 CPCGSADEYSLCCGRIVSGERVAP 28
>TTDB_SHIFL (P0AC37) L(+)-tartrate dehydratase beta subunit (EC 4.2.1.32)| (L-TTD beta) Length = 201 Score = 27.7 bits (60), Expect = 7.9 Identities = 12/36 (33%), Positives = 17/36 (47%) Frame = -2 Query: 246 HDLFPLCCTRLESGDKPEP*SIPWLEVFLLSSLWTC 139 H +FP C L + E + W E+ + SLW C Sbjct: 120 HVIFPAGCAVLAATQVEEIEEVHWTELGMPESLWVC 155
>TTDB_ECOLI (P0AC35) L(+)-tartrate dehydratase beta subunit (EC 4.2.1.32)| (L-TTD beta) Length = 201 Score = 27.7 bits (60), Expect = 7.9 Identities = 12/36 (33%), Positives = 17/36 (47%) Frame = -2 Query: 246 HDLFPLCCTRLESGDKPEP*SIPWLEVFLLSSLWTC 139 H +FP C L + E + W E+ + SLW C Sbjct: 120 HVIFPAGCAVLAATQVEEIEEVHWTELGMPESLWVC 155
>TTDB_ECOL6 (P0AC36) L(+)-tartrate dehydratase beta subunit (EC 4.2.1.32)| (L-TTD beta) Length = 201 Score = 27.7 bits (60), Expect = 7.9 Identities = 12/36 (33%), Positives = 17/36 (47%) Frame = -2 Query: 246 HDLFPLCCTRLESGDKPEP*SIPWLEVFLLSSLWTC 139 H +FP C L + E + W E+ + SLW C Sbjct: 120 HVIFPAGCAVLAATQVEEIEEVHWTELGMPESLWVC 155
>TTDB_ECO57 (Q8XBK5) L(+)-tartrate dehydratase beta subunit (EC 4.2.1.32)| (L-TTD beta) Length = 201 Score = 27.7 bits (60), Expect = 7.9 Identities = 12/36 (33%), Positives = 17/36 (47%) Frame = -2 Query: 246 HDLFPLCCTRLESGDKPEP*SIPWLEVFLLSSLWTC 139 H +FP C L + E + W E+ + SLW C Sbjct: 120 HVIFPAGCAVLAATQVEEIEEVHWTELGMPESLWVC 155 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,425,603 Number of Sequences: 219361 Number of extensions: 750759 Number of successful extensions: 1786 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1775 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1786 length of database: 80,573,946 effective HSP length: 68 effective length of database: 65,657,398 effective search space used: 1575777552 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
