ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet74f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KRA24_HUMAN (Q9BYR9) Keratin-associated protein 2-4 (Keratin-ass... 29 3.4
2MTA_STRPU (P04734) Metallothionein-A (MTA) 28 4.4
3TPX2_HUMAN (Q9ULW0) Targeting protein for Xklp2 (Restricted expr... 28 4.4
4PEPF_MYCGE (P47429) Oligoendopeptidase F homolog (EC 3.4.24.-) 28 4.4
5PEX5_DEBHA (Q6BM14) Peroxisomal targeting signal receptor (Perox... 28 7.6
6LEUNG_ARATH (Q9FUY2) Transcriptional corepressor LEUNIG 28 7.6
7CFT1_YEAST (Q06632) Protein CFT1 (Cleavage factor two protein 1) 27 9.9

>KRA24_HUMAN (Q9BYR9) Keratin-associated protein 2-4 (Keratin-associated protein|
           2.4) (High sulfur keratin-associated protein 2.4)
          Length = 128

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 168 SSTQHMRTCCVFAVKRDACCCKAIT*NRVLCK 73
           SS  +   CC     RD CCC+ +T    +C+
Sbjct: 11  SSLSYGGGCCQPCCCRDPCCCRPVTCQTTVCR 42



to top

>MTA_STRPU (P04734) Metallothionein-A (MTA)|
          Length = 64

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -3

Query: 147 TCCVFAVKRDACCCKAIT*NRVLCKSGCSCTKG 49
           TCC       AC C     N   C SGCSCT+G
Sbjct: 33  TCCGICTNA-ACKCA----NGCKCGSGCSCTEG 60



to top

>TPX2_HUMAN (Q9ULW0) Targeting protein for Xklp2 (Restricted expression|
           proliferation-associated protein 100) (p100)
           (Differentially expressed in cancerous and noncancerous
           lung cells 2) (DIL-2) (Protein FLS353) (Hepatocellular
           carcinoma-associated antige
          Length = 747

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
 Frame = +2

Query: 17  RGFIVTKRLYVPFVQEQPDLHS---TRFYVIALQQHASLLTAKTQQVRICWVEEP----- 172
           R F  T   YVP  Q+  D H     R+++ + +   +LL +K+   +IC   +P     
Sbjct: 315 RTFDETVSTYVPLAQQVEDFHKRTPNRYHLRSKKDDINLLPSKSSVTKIC--RDPQTPVL 372

Query: 173 SRCYRTRRTTC 205
              +R R  TC
Sbjct: 373 QTKHRARAVTC 383



to top

>PEPF_MYCGE (P47429) Oligoendopeptidase F homolog (EC 3.4.24.-)|
          Length = 607

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 148 PHMLGGRTESLLSDAKNDMFRNASMLFSIIRLQLF*LSPKMNSSARDLIGGIS 306
           PH L  +T+SLLS   N  F  A  +F+I+      L P +  + +  I  +S
Sbjct: 138 PHQLSSQTQSLLSQI-NPCFNQAERIFNILSTADLNLQPVVYQNKKYPINSVS 189



to top

>PEX5_DEBHA (Q6BM14) Peroxisomal targeting signal receptor (Peroxin-5) (PTS1|
           receptor)
          Length = 603

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +1

Query: 97  YSLTTTCVPLDCKDTASPHMLGG----RTESLLSDAKNDMFRNAS 219
           Y+L  +C+ + C   A+ H+L G    + E + +DA + +  N S
Sbjct: 521 YNLGVSCINIGCYKEAAEHLLSGLSMHQVEGVQTDASSTLNHNQS 565



to top

>LEUNG_ARATH (Q9FUY2) Transcriptional corepressor LEUNIG|
          Length = 931

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 184 ITTTRFFHPTYADLLCLCSQEGRMLL*GYNIKSCT 80
           + T+  FHP   DL+C C  +  +     N  SCT
Sbjct: 738 MVTSLDFHPIKDDLICSCDNDNEIRYWSINNGSCT 772



to top

>CFT1_YEAST (Q06632) Protein CFT1 (Cleavage factor two protein 1)|
          Length = 1357

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = -1

Query: 287 SLADEFILGDSQNSWSRMMENSMDAFRNMSFFASDNNDSVLPPN 156
           ++ +EF++G S++   +++   + A   + FF  D+ND +   N
Sbjct: 713 NMCNEFLIGLSKSQEEQLLFTFVTADNQIIFFTKDHNDRIFQLN 756


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,131,927
Number of Sequences: 219361
Number of extensions: 917921
Number of successful extensions: 2458
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2455
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top