ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet74b12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC106818.2| Homo sapiens chromosome 5 clone RP11-65F13, compl... 42 0.28
2emb|CR859356.1| Pongo pygmaeus mRNA; cDNA DKFZp459F1629 (from cl... 42 0.28
3emb|CR859258.1| Pongo pygmaeus mRNA; cDNA DKFZp459G191 (from clo... 42 0.28
4emb|AL832982.1|HSM804293 Homo sapiens mRNA; cDNA DKFZp666C133 (f... 42 0.28
5ref|NM_016622.2| Homo sapiens mitochondrial ribosomal protein L3... 42 0.28
6emb|CR609156.1| full-length cDNA clone CS0DC011YL15 of Neuroblas... 42 0.28
7gb|AC108102.2| Homo sapiens chromosome 5 clone RP11-185E12, comp... 42 0.28
8gb|AC009309.4| Homo sapiens BAC clone RP11-301O19 from 2, comple... 42 0.28
9ref|XM_393310.2| PREDICTED: Apis mellifera similar to ENSANGP000... 42 0.28
10dbj|AK026220.1| Homo sapiens cDNA: FLJ22567 fis, clone HSI02118 42 0.28
11dbj|AK074352.1| Homo sapiens cDNA FLJ23772 fis, clone HEP19523 42 0.28
12emb|BX119917.9| Human DNA sequence from clone RP11-262D11 on chr... 40 1.1
13gb|AC161347.2| Mus musculus chromosome 15, clone RP23-273M5, com... 40 1.1
14dbj|AB236792.1| Trifolium pratense RNA for putative DNA binding ... 40 1.1
15gb|AC026362.38| Homo sapiens 12 BAC RP11-197N18 (Roswell Park Ca... 40 1.1
16emb|BX908385.10| Zebrafish DNA sequence from clone CH211-282N12 ... 40 1.1
17emb|BX936304.7| Zebrafish DNA sequence from clone CH211-206G24 i... 40 1.1
18emb|AL929309.6| Zebrafish DNA sequence from clone CH211-51L3 in ... 40 1.1
19ref|XM_483616.1| Oryza sativa (japonica cultivar-group), mRNA 38 4.4
20gb|AC129178.4| Mus musculus BAC clone RP23-217G18 from chromosom... 38 4.4
21gb|AC146817.10| Medicago truncatula clone mth2-8c19, complete se... 38 4.4
22emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosome 4, ... 38 4.4
23emb|AL021961.2|ATF28A23 Arabidopsis thaliana DNA chromosome 4, B... 38 4.4
24emb|CR376745.11| Zebrafish DNA sequence from clone CH211-147K10 ... 38 4.4
25gb|AC153163.2| Ornithorhynchus anatinus BAC clone OABb-434A1 fro... 38 4.4
26gb|AC091010.5| Homo sapiens chromosome 8, clone RP11-680F23, com... 38 4.4
27gb|AC091920.2| Homo sapiens chromosome 5 clone RP11-254G13, comp... 38 4.4
28gb|AC154441.3| Mus musculus BAC clone RP24-176O5 from chromosome... 38 4.4
29gb|AC159809.2| Mus musculus BAC clone RP24-216P6 from chromosome... 38 4.4
30dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.4
31dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.4
32gb|AC073283.8| Homo sapiens BAC clone RP11-761B3 from 2, complet... 38 4.4
33gb|AC069474.4|AC069474 Arabidopsis thaliana chromosome 3 BAC T2E... 38 4.4
34emb|AL954309.11| Zebrafish DNA sequence from clone CH211-213D2 i... 38 4.4
35gb|AC135964.2| Mus musculus BAC clone RP23-306G18 from chromosom... 38 4.4
36dbj|AP002047.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 38 4.4
37dbj|AP004632.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.4
38dbj|AK102923.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 4.4
39emb|CR936402.11| Zebrafish DNA sequence from clone CH211-276P20 ... 38 4.4
40gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 4.4
41emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa... 38 4.4
42emb|AL713906.3|CNS07YQ6 Oryza sativa chromosome 12, . BAC OJ1587... 38 4.4
43dbj|AP003480.1| Homo sapiens genomic DNA, chromosome 8q23, clone... 38 4.4 
>gb|AC106818.2| Homo sapiens chromosome 5 clone RP11-65F13, complete sequence
          Length = 180056

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 6      gcaaatccatcaaaacagaat 26
              |||||||||||||||||||||
Sbjct: 167695 gcaaatccatcaaaacagaat 167715
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>emb|CR859356.1| Pongo pygmaeus mRNA; cDNA DKFZp459F1629 (from clone DKFZp459F1629)
          Length = 3300

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 8    aaatccatcaaaacagaatgc 28
            |||||||||||||||||||||
Sbjct: 2453 aaatccatcaaaacagaatgc 2433
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>emb|CR859258.1| Pongo pygmaeus mRNA; cDNA DKFZp459G191 (from clone DKFZp459G191)
          Length = 3203

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 8    aaatccatcaaaacagaatgc 28
            |||||||||||||||||||||
Sbjct: 2323 aaatccatcaaaacagaatgc 2303
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>emb|AL832982.1|HSM804293 Homo sapiens mRNA; cDNA DKFZp666C133 (from clone DKFZp666C133)
          Length = 2768

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 8    aaatccatcaaaacagaatgc 28
            |||||||||||||||||||||
Sbjct: 2309 aaatccatcaaaacagaatgc 2289
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>ref|NM_016622.2| Homo sapiens mitochondrial ribosomal protein L35 (MRPL35), nuclear
            gene encoding mitochondrial protein, transcript variant
            1, mRNA
          Length = 2805

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 8    aaatccatcaaaacagaatgc 28
            |||||||||||||||||||||
Sbjct: 2337 aaatccatcaaaacagaatgc 2317
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>emb|CR609156.1| full-length cDNA clone CS0DC011YL15 of Neuroblastoma Cot
            25-normalized of Homo sapiens (human)
          Length = 2323

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 8    aaatccatcaaaacagaatgc 28
            |||||||||||||||||||||
Sbjct: 1931 aaatccatcaaaacagaatgc 1911
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>gb|AC108102.2| Homo sapiens chromosome 5 clone RP11-185E12, complete sequence
          Length = 161056

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     gcaaatccatcaaaacagaat 26
             |||||||||||||||||||||
Sbjct: 82659 gcaaatccatcaaaacagaat 82639
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>gb|AC009309.4| Homo sapiens BAC clone RP11-301O19 from 2, complete sequence
          Length = 170720

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 8    aaatccatcaaaacagaatgc 28
            |||||||||||||||||||||
Sbjct: 8170 aaatccatcaaaacagaatgc 8190
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>ref|XM_393310.2| PREDICTED: Apis mellifera similar to ENSANGP00000009664 (LOC409819),
            mRNA
          Length = 1242

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 33   acagcaagatttacagaccca 53
            |||||||||||||||||||||
Sbjct: 1201 acagcaagatttacagaccca 1221
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>dbj|AK026220.1| Homo sapiens cDNA: FLJ22567 fis, clone HSI02118
          Length = 1419

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 8   aaatccatcaaaacagaatgc 28
           |||||||||||||||||||||
Sbjct: 964 aaatccatcaaaacagaatgc 944
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>dbj|AK074352.1| Homo sapiens cDNA FLJ23772 fis, clone HEP19523
          Length = 2796

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 8    aaatccatcaaaacagaatgc 28
            |||||||||||||||||||||
Sbjct: 2333 aaatccatcaaaacagaatgc 2313
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>emb|BX119917.9| Human DNA sequence from clone RP11-262D11 on chromosome X Contains the
             gene for a novel protein (KIAA2001), the gene for a novel
             protein similar to multidomain presynaptic cytomatrix
             protein Piccolo; piccolo (presynaptic cytomatrix protein),
             an apoptosis inhibitor (FKSG2) pseudogene, the PIN4 gene
             for protein (peptidyl-prolyl cis/trans isomerase)
             NIMA-interacting 4 (parvulin), the 3' end of the gene for
             a novel protein (FLJ20105) and a two CpG islands, complete
             sequence
          Length = 134620

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     gcaaatccatcaaaacagaa 25
             ||||||||||||||||||||
Sbjct: 34004 gcaaatccatcaaaacagaa 33985
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>gb|AC161347.2| Mus musculus chromosome 15, clone RP23-273M5, complete sequence
          Length = 191833

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    caagtgttacatttatttat 97
             ||||||||||||||||||||
Sbjct: 37047 caagtgttacatttatttat 37028
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>dbj|AB236792.1| Trifolium pratense RNA for putative DNA binding protein, partial cds,
            clone: C1861
          Length = 1438

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 4    aagcaaatccatcaaaacag 23
            ||||||||||||||||||||
Sbjct: 1269 aagcaaatccatcaaaacag 1250
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>gb|AC026362.38| Homo sapiens 12 BAC RP11-197N18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 163077

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      gcaaatccatcaaaacagaa 25
              ||||||||||||||||||||
Sbjct: 119031 gcaaatccatcaaaacagaa 119012
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>emb|BX908385.10| Zebrafish DNA sequence from clone CH211-282N12 in linkage group 18,
            complete sequence
          Length = 139547

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 79   aagtgttacatttatttata 98
            ||||||||||||||||||||
Sbjct: 7486 aagtgttacatttatttata 7505
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>emb|BX936304.7| Zebrafish DNA sequence from clone CH211-206G24 in linkage group 18,
              complete sequence
          Length = 167305

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 79     aagtgttacatttatttata 98
              ||||||||||||||||||||
Sbjct: 161207 aagtgttacatttatttata 161188
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>emb|AL929309.6| Zebrafish DNA sequence from clone CH211-51L3 in linkage group 25,
              complete sequence
          Length = 191745

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 78     caagtgttacatttatttat 97
              ||||||||||||||||||||
Sbjct: 170773 caagtgttacatttatttat 170754
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>ref|XM_483616.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1964

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 4   aagcaaatccatcaaaaca 22
           |||||||||||||||||||
Sbjct: 466 aagcaaatccatcaaaaca 484
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>gb|AC129178.4| Mus musculus BAC clone RP23-217G18 from chromosome 16, complete
             sequence
          Length = 185769

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 81    gtgttacatttatttatag 99
             |||||||||||||||||||
Sbjct: 11489 gtgttacatttatttatag 11471
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>gb|AC146817.10| Medicago truncatula clone mth2-8c19, complete sequence
          Length = 114343

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 16    caaaacagaatgcacaaacagca 38
             |||||||||| ||||||||||||
Sbjct: 43222 caaaacagaaagcacaaacagca 43244
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>emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 80
          Length = 192861

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 44     tacagacccataaatgaaa 62
              |||||||||||||||||||
Sbjct: 144044 tacagacccataaatgaaa 144062
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>emb|AL021961.2|ATF28A23 Arabidopsis thaliana DNA chromosome 4, BAC clone F28A23 (ESSA project)
          Length = 94091

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 44    tacagacccataaatgaaa 62
             |||||||||||||||||||
Sbjct: 13995 tacagacccataaatgaaa 14013
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>emb|CR376745.11| Zebrafish DNA sequence from clone CH211-147K10 in linkage group 25,
             complete sequence
          Length = 186587

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    tccatcaaaacagaatgca 29
             |||||||||||||||||||
Sbjct: 89495 tccatcaaaacagaatgca 89513
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>gb|AC153163.2| Ornithorhynchus anatinus BAC clone OABb-434A1 from chromosome unknown,
              complete sequence
          Length = 156066

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 80     agtgttacatttatttata 98
              |||||||||||||||||||
Sbjct: 105658 agtgttacatttatttata 105676
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>gb|AC091010.5| Homo sapiens chromosome 8, clone RP11-680F23, complete sequence
          Length = 186881

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 79     aagtgttacatttatttat 97
              |||||||||||||||||||
Sbjct: 183263 aagtgttacatttatttat 183281
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>gb|AC091920.2| Homo sapiens chromosome 5 clone RP11-254G13, complete sequence
          Length = 150354

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 75    tctcaagtgttacatttat 93
             |||||||||||||||||||
Sbjct: 20063 tctcaagtgttacatttat 20045
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>gb|AC154441.3| Mus musculus BAC clone RP24-176O5 from chromosome 13, complete sequence
          Length = 169507

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 79    aagtgttacatttatttat 97
             |||||||||||||||||||
Sbjct: 42872 aagtgttacatttatttat 42890
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>gb|AC159809.2| Mus musculus BAC clone RP24-216P6 from chromosome 9, complete sequence
          Length = 160712

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    tgcacaaacagcaagattt 44
             |||||||||||||||||||
Sbjct: 22355 tgcacaaacagcaagattt 22337
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 18      aaacagaatgcacaaacag 36
               |||||||||||||||||||
Sbjct: 3144829 aaacagaatgcacaaacag 3144847



 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 18      aaacagaatgcacaaacag 36
               |||||||||||||||||||
Sbjct: 3144779 aaacagaatgcacaaacag 3144797
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 4        aagcaaatccatcaaaaca 22
                |||||||||||||||||||
Sbjct: 27296345 aagcaaatccatcaaaaca 27296363
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>gb|AC073283.8| Homo sapiens BAC clone RP11-761B3 from 2, complete sequence
          Length = 181720

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 1      atgaagcaaatccatcaaa 19
              |||||||||||||||||||
Sbjct: 118548 atgaagcaaatccatcaaa 118566
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>gb|AC069474.4|AC069474 Arabidopsis thaliana chromosome 3 BAC T2E22 genomic sequence, complete
             sequence
          Length = 105768

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 7     caaatccatcaaaacagaa 25
             |||||||||||||||||||
Sbjct: 56364 caaatccatcaaaacagaa 56346
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>emb|AL954309.11| Zebrafish DNA sequence from clone CH211-213D2 in linkage group 8,
              complete sequence
          Length = 209195

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 15     tcaaaacagaatgcacaaa 33
              |||||||||||||||||||
Sbjct: 130559 tcaaaacagaatgcacaaa 130541
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>gb|AC135964.2| Mus musculus BAC clone RP23-306G18 from chromosome 16, complete
             sequence
          Length = 179599

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 81    gtgttacatttatttatag 99
             |||||||||||||||||||
Sbjct: 26119 gtgttacatttatttatag 26137
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>dbj|AP002047.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MQC3
          Length = 86536

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 7     caaatccatcaaaacagaa 25
             |||||||||||||||||||
Sbjct: 85101 caaatccatcaaaacagaa 85119
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>dbj|AP004632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0623F08
          Length = 154540

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 4      aagcaaatccatcaaaaca 22
              |||||||||||||||||||
Sbjct: 119548 aagcaaatccatcaaaaca 119566
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>dbj|AK102923.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114C16, full
           insert sequence
          Length = 1964

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 4   aagcaaatccatcaaaaca 22
           |||||||||||||||||||
Sbjct: 466 aagcaaatccatcaaaaca 484
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>emb|CR936402.11| Zebrafish DNA sequence from clone CH211-276P20 in linkage group 3,
             complete sequence
          Length = 92277

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 79    aagtgttacatttatttat 97
             |||||||||||||||||||
Sbjct: 63879 aagtgttacatttatttat 63861
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 18      aaacagaatgcacaaacag 36
               |||||||||||||||||||
Sbjct: 3144774 aaacagaatgcacaaacag 3144792



 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 18      aaacagaatgcacaaacag 36
               |||||||||||||||||||
Sbjct: 3144724 aaacagaatgcacaaacag 3144742
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>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 18    aaacagaatgcacaaacag 36
             |||||||||||||||||||
Sbjct: 10064 aaacagaatgcacaaacag 10046



 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 18    aaacagaatgcacaaacag 36
             |||||||||||||||||||
Sbjct: 10014 aaacagaatgcacaaacag 9996
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>emb|AL713906.3|CNS07YQ6 Oryza sativa chromosome 12, . BAC OJ1587_D05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 90756

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 18    aaacagaatgcacaaacag 36
             |||||||||||||||||||
Sbjct: 72885 aaacagaatgcacaaacag 72867



 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 18    aaacagaatgcacaaacag 36
             |||||||||||||||||||
Sbjct: 72835 aaacagaatgcacaaacag 72817
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>dbj|AP003480.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1970H2
          Length = 150331

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 79    aagtgttacatttatttat 97
             |||||||||||||||||||
Sbjct: 95326 aagtgttacatttatttat 95308


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,495,933
Number of Sequences: 3902068
Number of extensions: 1495933
Number of successful extensions: 106827
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106650
Number of HSP's gapped (non-prelim): 177
length of query: 99
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 78
effective length of database: 17,151,101,840
effective search space: 1337785943520
effective search space used: 1337785943520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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