>CC2H1_TRYBB (P38973) Cell division control protein 2 homolog 1 (EC 2.7.11.22)|
          Length = 301

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 21/90 (23%), Positives = 40/90 (44%)
 Frame = +1

Query: 67  LTPGIQVC*HQKQHTFTNISPPHLQLAKIVCLKINTIALYHCSEVQISNFQKQMDTDGSV 246
           L  G++ C H++     ++ PP+L +++   LK+    L     + +  F +++     V
Sbjct: 111 LLSGVRFC-HERNVLHRDLKPPNLLISREKELKLADFGLGRAFGIPVKKFTQEV-----V 164

Query: 247 DTWMPFPYANGDAPFYGLPLGVDGWACGTV 336
             W   P     +  YG P  VD W+ G +
Sbjct: 165 TLWYRSPDVLLGSTQYGTP--VDIWSVGCI 192

>THYG_BOVIN (P01267) Thyroglobulin precursor|
          Length = 2769

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
 Frame = +1

Query: 112  FTNISPPHLQLAKIVCLKINTIALYHCSEVQISNFQKQMDTDGSVDT--------WMPFP 267
            F N+S   L+  ++ CL +N++ L  CSE +     + +D  GS DT        W   P
Sbjct: 2012 FLNVS--QLKGGEVTCLTLNSLGLQTCSE-EYGGVWRILDC-GSPDTEVRTYPFGWYQKP 2067

Query: 268  YANGDAPFY 294
             +  DAP +
Sbjct: 2068 VSPSDAPSF 2076

>NELL2_HUMAN (Q99435) Protein kinase C-binding protein NELL2 precursor (NEL-like|
           protein 2) (Nel-related protein 2)
          Length = 816

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 157 CLKINTIALYHCSEVQISNFQKQMDTDGSVDTWMPFPYANGDAPFYGLP 303
           CL  N   LY+  +  + N Q+     G VD W P P  + +  F  LP
Sbjct: 700 CLHQNGETLYNSGDTWVQNCQQCRCLQGEVDCW-PLPCPDVECEFSILP 747

>SYIC_CAEEL (Q21926) Isoleucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.5)|
            (Isoleucine--tRNA ligase) (IleRS)
          Length = 1141

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
 Frame = +1

Query: 106  HTFTNISPPHLQLAKIVCLKINTIALYHCSEVQISN----------FQKQMDTDGSVDTW 255
            H    +SP   QLAK+V  K+N I     + +++ +            K    D  V+ W
Sbjct: 1002 HVHIVVSPADSQLAKVVAAKLNDIVSATGTPIKLGSPPAAAKAPTATSKSAIKDSEVELW 1061

Query: 256  MPFPYANGDAPFYGLPLGVDG 318
            +   +A GD+ F G+ + VDG
Sbjct: 1062 L---FAEGDS-FDGITV-VDG 1077

>CHLB_BAZTR (P37844) Light-independent protochlorophyllide reductase subunit B|
           (EC 1.18.-.-) (LI-POR subunit B) (DPOR subunit B)
           (Fragment)
          Length = 103

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 18  VRNISQLPQSWFIEIEIDTRNPGLLTPKAAYVYKHFTTSF 137
           V N+ QLP++WF  +    R  GL+T K  Y+ K F  S+
Sbjct: 21  VENLRQLPKAWFNLVPY--REVGLMTAK--YLEKEFGMSY 56

>DAM1_CANAL (Q5APC8) DASH complex subunit DAM1 (Outer kinetochore protein DAM1)|
          Length = 277

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -1

Query: 313 RRQVVTRRKEHPHWHMEMASRCPLSHQYPFAFENLRFVPP 194
           RRQ   RR  H    +++ S  P  H YP   ENL    P
Sbjct: 13  RRQNSGRRHSHRSSGIQLPSMSPKVHHYPIDAENLPMDSP 52

>SYT_BUCAI (P57225) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 642

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
 Frame = +1

Query: 163 KINTIALYHCSEVQISNFQKQMDTDGSVDTWMPFPYANGDAPFYG------LPLGVD-GW 321
           +I T +L++ SE  +S        D  ++  + F Y +G+  FYG      L   +D  W
Sbjct: 427 RIGTDSLWNESEKDLS--------DMLIENHLSFEYQSGEGAFYGPKIEFILQDSLDRNW 478

Query: 322 ACGTV 336
            CGT+
Sbjct: 479 QCGTI 483

>YPBR_BACSU (P54159) Hypothetical protein ypbR|
          Length = 1193

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
 Frame = +1

Query: 31   LNYLKVGLLKLKLTPGIQVC*HQKQHTFTNISPPH------LQLAKIVCLKINTIALYHC 192
            L+Y    LLK    PG+Q    +K  +    +  H      +Q  K + ++++     H 
Sbjct: 983  LSYFANDLLKSAFHPGLQNGDWKKNVSKAMTTALHEYLFEYIQEIKTLDVRMSGFIERHI 1042

Query: 193  SEVQISNFQKQMDTDGSVDTWMPFPYANG 279
            +E  + +FQK ++ DG    +    ++NG
Sbjct: 1043 NEEWLDHFQKTLNEDGYFSVYAGDQHSNG 1071


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,204,927
Number of Sequences: 219361
Number of extensions: 1070486
Number of successful extensions: 2428
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2427
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)