ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet74a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1E75BB_DROME (P13055) Ecdysone-induced protein 75B isoform B (E75-C) 31 0.77
2TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha) 29 2.9
3TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha) 28 5.0
4ADAM8_MOUSE (Q05910) ADAM 8 precursor (EC 3.4.24.-) (A disintegr... 28 8.6

>E75BB_DROME (P13055) Ecdysone-induced protein 75B isoform B (E75-C)|
          Length = 1412

 Score = 31.2 bits (69), Expect = 0.77
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 63  HKTVVASQHVQEPRSRPDSHTHKVNKQQSRAHQAH 167
           H  V+AS H Q+ + +  +  H+   QQ + HQ H
Sbjct: 313 HVNVIASNHFQQQQQQHQAQQHQQQHQQHQQHQQH 347



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>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 281

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
 Frame = +3

Query: 12  SYN*TLKKIQSKLNYYYHKTVVASQ-HVQEPRSRPDSHTHKVNKQQSRAH------QAHT 170
           S++ +  K +S+   + H+    S+ H    RSR  S+T +  +++SR+H      + HT
Sbjct: 48  SHSRSRSKSRSRSRRHSHRRYTRSRSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHT 107

Query: 171 RIQRANPD 194
              RANPD
Sbjct: 108 G-SRANPD 114



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>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 282

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
 Frame = +3

Query: 12  SYN*TLKKIQSKLNYYYHKTVVASQ---HVQEPRSRPDSHTHKVNKQQSRAH------QA 164
           S++ +  K +S+   + H+    S+   H    RSR  S+T +  +++SR+H      + 
Sbjct: 48  SHSRSRSKSRSRSRRHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRR 107

Query: 165 HTRIQRANPD 194
           HT   RANPD
Sbjct: 108 HTG-SRANPD 116



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>ADAM8_MOUSE (Q05910) ADAM 8 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 8) (Cell surface antigen MS2)
           (Macrophage cysteine-rich glycoprotein) (CD156 antigen)
          Length = 826

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 157 CARDCCLFTLCVWLSGLDLGSCTCC 83
           C   CC  T C  + G +  S TCC
Sbjct: 425 CQNPCCNATTCQLVKGAECASGTCC 449


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,491,900
Number of Sequences: 219361
Number of extensions: 474667
Number of successful extensions: 1614
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1613
length of database: 80,573,946
effective HSP length: 44
effective length of database: 70,922,062
effective search space used: 1702129488
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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