ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet73f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CYB_EULMM (O99797) Cytochrome b 30 1.8
2CYB_ZALCA (Q36266) Cytochrome b 28 8.7
3CYB_EUMJU (Q34471) Cytochrome b 28 8.7
4CYB_EULMF (O99798) Cytochrome b 28 8.7
5CYB_ARCGZ (Q33688) Cytochrome b 28 8.7

>CYB_EULMM (O99797) Cytochrome b|
          Length = 379

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 39  ITGPWNKTLLLQFTIRSTRFTGY 107
           +TG WN  ++L FT+ +T F GY
Sbjct: 109 LTGTWNIGIILLFTVMATAFMGY 131



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>CYB_ZALCA (Q36266) Cytochrome b|
          Length = 379

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 30  SRKITGPWNKTLLLQFTIRSTRFTGY 107
           S  +T  WN  ++L FTI +T F GY
Sbjct: 106 SYTLTETWNIGIILLFTIMATAFMGY 131



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>CYB_EUMJU (Q34471) Cytochrome b|
          Length = 379

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 30  SRKITGPWNKTLLLQFTIRSTRFTGY 107
           S  +T  WN  ++L FTI +T F GY
Sbjct: 106 SYTLTETWNIGIILLFTIMATAFMGY 131



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>CYB_EULMF (O99798) Cytochrome b|
          Length = 379

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 39  ITGPWNKTLLLQFTIRSTRFTGY 107
           +T  WN  ++L FT+ +T F GY
Sbjct: 109 LTETWNMGIILLFTVMATAFMGY 131



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>CYB_ARCGZ (Q33688) Cytochrome b|
          Length = 379

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 30  SRKITGPWNKTLLLQFTIRSTRFTGY 107
           S  +T  WN  ++L FTI +T F GY
Sbjct: 106 SYTLTETWNIGIILLFTIMATAFMGY 131


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,216,662
Number of Sequences: 219361
Number of extensions: 428367
Number of successful extensions: 2081
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2081
length of database: 80,573,946
effective HSP length: 37
effective length of database: 72,457,589
effective search space used: 1738982136
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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