ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet73e09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018886.1| Zea mays clone EL01T0205E01.d mRNA sequence 163 5e-37
2ref|NM_189533.1| Oryza sativa (japonica cultivar-group), mRNA 155 1e-34
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 155 1e-34
4dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic D... 155 1e-34
5dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic D... 155 1e-34
6gb|AY106881.1| Zea mays PCO146606 mRNA sequence 139 8e-30
7ref|XM_476061.1| Oryza sativa (japonica cultivar-group), predic... 135 1e-28
8gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome... 135 1e-28
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
10dbj|AK100028.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
11dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.022
12dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.022
13dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.022
14dbj|AK120657.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.022
15gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 42 1.3
16emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.3
17gb|DQ227316.1| Synthetic construct VAR2CSA mRNA, partial cds 42 1.3
18emb|X64701.1|HMGVPG H.mediterranei genes gvpA, gvpC to gvpO 42 1.3
19gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, c... 40 5.3
20gb|AC125010.6| Mus musculus chromosome 10, clone RP24-117L12, co... 40 5.3
21ref|XM_842720.1| Leishmania major strain Friedlin hypothetical p... 40 5.3
22emb|AL713917.6| Mouse DNA sequence from clone RP23-352L3 on chro... 40 5.3
23gb|AE011727.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 5.3
24dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 40 5.3
25gb|AC160964.1| Mus musculus BAC clone RP24-316G24 from chromosom... 40 5.3
26dbj|AB185544.1| Uncultured rumen bacterium gene for 16S rRNA, pa... 40 5.3
27dbj|AB084949.2| Mus musculus Stx-7 gene for syntaxin-7, complete... 40 5.3
28dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.3
29gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 40 5.3
30emb|AL591373.8| Mouse DNA sequence from clone RP23-268M6 on chro... 40 5.3
31gb|AC090534.10| Mus musculus Strain C57BL6/J chromosome 18 BAC, ... 40 5.3 
>gb|BT018886.1| Zea mays clone EL01T0205E01.d mRNA sequence
          Length = 1617

 Score =  163 bits (82), Expect = 5e-37
 Identities = 142/162 (87%)
 Strand = Plus / Minus

                                                                        
Query: 237  tgtcgagcattccctcgtggaaggcggcgacgcggtcgggcgtcacgcactgggtgatca 296
            ||||||||||  |||||||||||| |||||||||||| || || |||||||| ||||| |
Sbjct: 1441 tgtcgagcatggcctcgtggaagggggcgacgcggtccggggtgacgcactgcgtgatga 1382

                                                                        
Query: 297  gccgcgctcctggcttgtgcgcccatggcttcaccagtatgcacgtcgcgatgtagtcca 356
            ||||||| ||||||||||| ||||| |||||||| || |||||||| |||||||||||||
Sbjct: 1381 gccgcgcccctggcttgtgggcccagggcttcacgaggatgcacgtggcgatgtagtcca 1322

                                                      
Query: 357  ggttcgtgaggggcacgacgtgcgccggcggtccccagccgt 398
            |||| || || |||||||||||||| ||||| ||||| ||||
Sbjct: 1321 ggtttgtcagcggcacgacgtgcgcgggcgggccccatccgt 1280
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>ref|NM_189533.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1314

 Score =  155 bits (78), Expect = 1e-34
 Identities = 147/170 (86%)
 Strand = Plus / Minus

                                                                        
Query: 229  tcagttcatgtcgagcattccctcgtggaaggcggcgacgcggtcgggcgtcacgcactg 288
            |||||||| |||||| |  ||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1314 tcagttcaggtcgaggaggccctcgtggaaggcggcgacgcggtcgggggtgacgcactg 1255

                                                                        
Query: 289  ggtgatcagccgcgctcctggcttgtgcgcccatggcttcaccagtatgcacgtcgcgat 348
            |||||| ||||| || || |||||||| ||||| ||| | || || |||||||| |||||
Sbjct: 1254 ggtgatgagccgggccccgggcttgtgggcccagggcctgacgaggatgcacgtggcgat 1195

                                                              
Query: 349  gtagtccaggttcgtgaggggcacgacgtgcgccggcggtccccagccgt 398
            ||||||||||||||| || ||||||||||| ||||| || ||||| ||||
Sbjct: 1194 gtagtccaggttcgtcagtggcacgacgtgggccggtgggccccacccgt 1145
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  155 bits (78), Expect = 1e-34
 Identities = 147/170 (86%)
 Strand = Plus / Plus

                                                                           
Query: 229     tcagttcatgtcgagcattccctcgtggaaggcggcgacgcggtcgggcgtcacgcactg 288
               |||||||| |||||| |  ||||||||||||||||||||||||||||| || ||||||||
Sbjct: 4109690 tcagttcaggtcgaggaggccctcgtggaaggcggcgacgcggtcgggggtgacgcactg 4109749

                                                                           
Query: 289     ggtgatcagccgcgctcctggcttgtgcgcccatggcttcaccagtatgcacgtcgcgat 348
               |||||| ||||| || || |||||||| ||||| ||| | || || |||||||| |||||
Sbjct: 4109750 ggtgatgagccgggccccgggcttgtgggcccagggcctgacgaggatgcacgtggcgat 4109809

                                                                 
Query: 349     gtagtccaggttcgtgaggggcacgacgtgcgccggcggtccccagccgt 398
               ||||||||||||||| || ||||||||||| ||||| || ||||| ||||
Sbjct: 4109810 gtagtccaggttcgtcagtggcacgacgtgggccggtgggccccacccgt 4109859
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>dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0509B06
          Length = 104515

 Score =  155 bits (78), Expect = 1e-34
 Identities = 147/170 (86%)
 Strand = Plus / Plus

                                                                         
Query: 229   tcagttcatgtcgagcattccctcgtggaaggcggcgacgcggtcgggcgtcacgcactg 288
             |||||||| |||||| |  ||||||||||||||||||||||||||||| || ||||||||
Sbjct: 76433 tcagttcaggtcgaggaggccctcgtggaaggcggcgacgcggtcgggggtgacgcactg 76492

                                                                         
Query: 289   ggtgatcagccgcgctcctggcttgtgcgcccatggcttcaccagtatgcacgtcgcgat 348
             |||||| ||||| || || |||||||| ||||| ||| | || || |||||||| |||||
Sbjct: 76493 ggtgatgagccgggccccgggcttgtgggcccagggcctgacgaggatgcacgtggcgat 76552

                                                               
Query: 349   gtagtccaggttcgtgaggggcacgacgtgcgccggcggtccccagccgt 398
             ||||||||||||||| || ||||||||||| ||||| || ||||| ||||
Sbjct: 76553 gtagtccaggttcgtcagtggcacgacgtgggccggtgggccccacccgt 76602
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>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0406H10
          Length = 156419

 Score =  155 bits (78), Expect = 1e-34
 Identities = 147/170 (86%)
 Strand = Plus / Plus

                                                                         
Query: 229   tcagttcatgtcgagcattccctcgtggaaggcggcgacgcggtcgggcgtcacgcactg 288
             |||||||| |||||| |  ||||||||||||||||||||||||||||| || ||||||||
Sbjct: 56661 tcagttcaggtcgaggaggccctcgtggaaggcggcgacgcggtcgggggtgacgcactg 56720

                                                                         
Query: 289   ggtgatcagccgcgctcctggcttgtgcgcccatggcttcaccagtatgcacgtcgcgat 348
             |||||| ||||| || || |||||||| ||||| ||| | || || |||||||| |||||
Sbjct: 56721 ggtgatgagccgggccccgggcttgtgggcccagggcctgacgaggatgcacgtggcgat 56780

                                                               
Query: 349   gtagtccaggttcgtgaggggcacgacgtgcgccggcggtccccagccgt 398
             ||||||||||||||| || ||||||||||| ||||| || ||||| ||||
Sbjct: 56781 gtagtccaggttcgtcagtggcacgacgtgggccggtgggccccacccgt 56830
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>gb|AY106881.1| Zea mays PCO146606 mRNA sequence
          Length = 535

 Score =  139 bits (70), Expect = 8e-30
 Identities = 118/134 (88%)
 Strand = Plus / Minus

                                                                       
Query: 265 gacgcggtcgggcgtcacgcactgggtgatcagccgcgctcctggcttgtgcgcccatgg 324
           |||||||||||||||||||||||| ||||| |||| ||| ||||||||||| ||||||||
Sbjct: 345 gacgcggtcgggcgtcacgcactgcgtgatgagcctcgcccctggcttgtgggcccatgg 286

                                                                       
Query: 325 cttcaccagtatgcacgtcgcgatgtagtccaggttcgtgaggggcacgacgtgcgccgg 384
           ||| || || |||||||| ||||||||||||| |||||| || ||||| ||||| || ||
Sbjct: 285 cttgacgaggatgcacgtggcgatgtagtccaagttcgtcagcggcaccacgtgggcggg 226

                         
Query: 385 cggtccccagccgt 398
           ||| ||||||||||
Sbjct: 225 cgggccccagccgt 212
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>ref|XM_476061.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1320

 Score =  135 bits (68), Expect = 1e-28
 Identities = 113/128 (88%)
 Strand = Plus / Minus

                                                                        
Query: 251  tcgtggaaggcggcgacgcggtcgggcgtcacgcactgggtgatcagccgcgctcctggc 310
            ||||||||||||| |||||||||||| || |||||||||||||| ||||| || ||||| 
Sbjct: 1298 tcgtggaaggcggtgacgcggtcgggtgtgacgcactgggtgatgagccgtgcccctggt 1239

                                                                        
Query: 311  ttgtgcgcccatggcttcaccagtatgcacgtcgcgatgtagtccaggttcgtgaggggc 370
            ||||| ||||| ||||| || || || ||||| ||||||||||||||||||||||| |||
Sbjct: 1238 ttgtgggcccagggcttgacgaggatacacgtggcgatgtagtccaggttcgtgagcggc 1179

                    
Query: 371  acgacgtg 378
            ||||||||
Sbjct: 1178 acgacgtg 1171
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>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09,
             complete sequence
          Length = 145070

 Score =  135 bits (68), Expect = 1e-28
 Identities = 113/128 (88%)
 Strand = Plus / Plus

                                                                         
Query: 251   tcgtggaaggcggcgacgcggtcgggcgtcacgcactgggtgatcagccgcgctcctggc 310
             ||||||||||||| |||||||||||| || |||||||||||||| ||||| || ||||| 
Sbjct: 45857 tcgtggaaggcggtgacgcggtcgggtgtgacgcactgggtgatgagccgtgcccctggt 45916

                                                                         
Query: 311   ttgtgcgcccatggcttcaccagtatgcacgtcgcgatgtagtccaggttcgtgaggggc 370
             ||||| ||||| ||||| || || || ||||| ||||||||||||||||||||||| |||
Sbjct: 45917 ttgtgggcccagggcttgacgaggatacacgtggcgatgtagtccaggttcgtgagcggc 45976

                     
Query: 371   acgacgtg 378
             ||||||||
Sbjct: 45977 acgacgtg 45984
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  135 bits (68), Expect = 1e-28
 Identities = 113/128 (88%)
 Strand = Plus / Plus

                                                                           
Query: 251     tcgtggaaggcggcgacgcggtcgggcgtcacgcactgggtgatcagccgcgctcctggc 310
               ||||||||||||| |||||||||||| || |||||||||||||| ||||| || ||||| 
Sbjct: 4677852 tcgtggaaggcggtgacgcggtcgggtgtgacgcactgggtgatgagccgtgcccctggt 4677911

                                                                           
Query: 311     ttgtgcgcccatggcttcaccagtatgcacgtcgcgatgtagtccaggttcgtgaggggc 370
               ||||| ||||| ||||| || || || ||||| ||||||||||||||||||||||| |||
Sbjct: 4677912 ttgtgggcccagggcttgacgaggatacacgtggcgatgtagtccaggttcgtgagcggc 4677971

                       
Query: 371     acgacgtg 378
               ||||||||
Sbjct: 4677972 acgacgtg 4677979
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>dbj|AK100028.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147B02, full
            insert sequence
          Length = 1897

 Score =  135 bits (68), Expect = 1e-28
 Identities = 113/128 (88%)
 Strand = Plus / Minus

                                                                        
Query: 251  tcgtggaaggcggcgacgcggtcgggcgtcacgcactgggtgatcagccgcgctcctggc 310
            ||||||||||||| |||||||||||| || |||||||||||||| ||||| || ||||| 
Sbjct: 1385 tcgtggaaggcggtgacgcggtcgggtgtgacgcactgggtgatgagccgtgcccctggt 1326

                                                                        
Query: 311  ttgtgcgcccatggcttcaccagtatgcacgtcgcgatgtagtccaggttcgtgaggggc 370
            ||||| ||||| ||||| || || || ||||| ||||||||||||||||||||||| |||
Sbjct: 1325 ttgtgggcccagggcttgacgaggatacacgtggcgatgtagtccaggttcgtgagcggc 1266

                    
Query: 371  acgacgtg 378
            ||||||||
Sbjct: 1265 acgacgtg 1258
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                            
Query: 335      atgcacgtcgcgatgtagtccaggttcgtgaggggcacgacgtg 378
                ||||| || ||||||||||| ||||| ||||| |||||||||||
Sbjct: 23056521 atgcaggtggcgatgtagtcgaggttggtgagcggcacgacgtg 23056478
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>dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0652A05
          Length = 150455

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                          
Query: 335    atgcacgtcgcgatgtagtccaggttcgtgaggggcacgacgtg 378
              ||||| || ||||||||||| ||||| ||||| |||||||||||
Sbjct: 123065 atgcaggtggcgatgtagtcgaggttggtgagcggcacgacgtg 123022
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>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0417D05
          Length = 165752

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 335  atgcacgtcgcgatgtagtccaggttcgtgaggggcacgacgtg 378
            ||||| || ||||||||||| ||||| ||||| |||||||||||
Sbjct: 7169 atgcaggtggcgatgtagtcgaggttggtgagcggcacgacgtg 7126
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>dbj|AK120657.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158E04, full
            insert sequence
          Length = 1507

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 335  atgcacgtcgcgatgtagtccaggttcgtgaggggcacgacgtg 378
            ||||| || ||||||||||| ||||| ||||| |||||||||||
Sbjct: 1135 atgcaggtggcgatgtagtcgaggttggtgagcggcacgacgtg 1092
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 366    ggggcacgacgtgcgccggcg 386
              |||||||||||||||||||||
Sbjct: 319210 ggggcacgacgtgcgccggcg 319230
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 366     ggggcacgacgtgcgccggcg 386
               |||||||||||||||||||||
Sbjct: 1645057 ggggcacgacgtgcgccggcg 1645077
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>gb|DQ227316.1| Synthetic construct VAR2CSA mRNA, partial cds
          Length = 8000

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 246  ttccctcgtggaaggcggcga 266
            |||||||||||||||||||||
Sbjct: 1873 ttccctcgtggaaggcggcga 1853
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>emb|X64701.1|HMGVPG H.mediterranei genes gvpA, gvpC to gvpO
          Length = 12690

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 234  tcatgtcgagcattccctcgt 254
            |||||||||||||||||||||
Sbjct: 6358 tcatgtcgagcattccctcgt 6338
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>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence
          Length = 1212674

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 255    ggaaggcggcgacgcggtcgggcg 278
              |||||||||| |||||||||||||
Sbjct: 680792 ggaaggcggcaacgcggtcgggcg 680815
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>gb|AC125010.6| Mus musculus chromosome 10, clone RP24-117L12, complete sequence
          Length = 223541

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     gtggctttccaccaaaccca 67
              ||||||||||||||||||||
Sbjct: 117505 gtggctttccaccaaaccca 117486
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>ref|XM_842720.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0790)
            partial mRNA
          Length = 3702

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 255  ggaaggcggcgacgcggtcgggcg 278
            |||||||||| |||||||||||||
Sbjct: 2149 ggaaggcggcaacgcggtcgggcg 2126
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>emb|AL713917.6| Mouse DNA sequence from clone RP23-352L3 on chromosome 11 Contains the
             5' end of the gene for the ortholog of human yippee-like 2
             (Drosophila) YPEL2, four novel genes and the 5' end of the
             Trim37 gene for tripartite motif protein 37, complete
             sequence
          Length = 168363

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    acaatcaactccccaaattc 88
             ||||||||||||||||||||
Sbjct: 96730 acaatcaactccccaaattc 96749
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>gb|AE011727.1| Xanthomonas axonopodis pv. citri str. 306,  section 105 of 469 of the
            complete genome
          Length = 9150

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 251  tcgtggaaggcggcgacgcggtcg 274
            |||||||||||||||||| |||||
Sbjct: 2579 tcgtggaaggcggcgacgtggtcg 2602
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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 250    ctcgtggaaggcggcgacgcggtc 273
              ||||||||||||||| ||||||||
Sbjct: 788056 ctcgtggaaggcggccacgcggtc 788079
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>gb|AC160964.1| Mus musculus BAC clone RP24-316G24 from chromosome 9, complete sequence
          Length = 158842

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     atacaatcaactccccaaat 86
              ||||||||||||||||||||
Sbjct: 107024 atacaatcaactccccaaat 107005
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>dbj|AB185544.1| Uncultured rumen bacterium gene for 16S rRNA, partial sequence,
           clone: F23-E02
          Length = 1514

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 257 aaggcggcgacgcggtcggg 276
           ||||||||||||||||||||
Sbjct: 198 aaggcggcgacgcggtcggg 217
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>dbj|AB084949.2| Mus musculus Stx-7 gene for syntaxin-7, complete cds
          Length = 35661

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    gtggctttccaccaaaccca 67
             ||||||||||||||||||||
Sbjct: 34600 gtggctttccaccaaaccca 34619
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 250     ctcgtggaaggcggcgacgcggtcgggc 277
               ||||||||||||| |||||||| |||||
Sbjct: 2145677 ctcgtggaaggcgacgacgcggacgggc 2145704
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>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 148     accaacccaatgcaaaccat 167
               ||||||||||||||||||||
Sbjct: 4216426 accaacccaatgcaaaccat 4216407
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>emb|AL591373.8| Mouse DNA sequence from clone RP23-268M6 on chromosome 18, complete
             sequence
          Length = 174264

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    ggaccagttgcttattttca 109
             ||||||||||||||||||||
Sbjct: 40221 ggaccagttgcttattttca 40202
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>gb|AC090534.10| Mus musculus Strain C57BL6/J chromosome 18 BAC, RP23-233F17, complete
              sequence
          Length = 176773

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 90     ggaccagttgcttattttca 109
              ||||||||||||||||||||
Sbjct: 162840 ggaccagttgcttattttca 162821


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,130,365
Number of Sequences: 3902068
Number of extensions: 3130365
Number of successful extensions: 63507
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63224
Number of HSP's gapped (non-prelim): 283
length of query: 398
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 376
effective length of database: 17,147,199,772
effective search space: 6447347114272
effective search space used: 6447347114272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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