ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaet73e07 |
|---|---|
| Clone Library Name | barley_pub |
>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein| Length = 346 Score = 47.0 bits (110), Expect = 2e-05 Identities = 16/34 (47%), Positives = 27/34 (79%) Frame = -3 Query: 435 KAKALNVSLVLPVAISVLVNQCGKHVPSSFQCPS 334 + K LN++++LP+A+ VL++ CGK+ P F+CPS Sbjct: 312 RLKLLNINIILPIALQVLIDDCGKYPPKDFKCPS 345
>14KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor| Length = 137 Score = 40.8 bits (94), Expect = 0.001 Identities = 16/32 (50%), Positives = 24/32 (75%) Frame = -3 Query: 435 KAKALNVSLVLPVAISVLVNQCGKHVPSSFQC 340 KA L +L LP+A+S+++N CGK VP+ F+C Sbjct: 105 KANILGKNLNLPIALSLVLNNCGKQVPNGFEC 136
>CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor (Root-specific| protein ZRP3) Length = 129 Score = 35.0 bits (79), Expect = 0.081 Identities = 12/34 (35%), Positives = 22/34 (64%) Frame = -3 Query: 435 KAKALNVSLVLPVAISVLVNQCGKHVPSSFQCPS 334 KA L + L +P++++ ++N CG+ P F CP+ Sbjct: 96 KANVLGIHLNVPLSLNFILNNCGRICPEDFTCPN 129
>PCDA9_PANTR (Q5DRE3) Protocadherin alpha 9 precursor (PCDH-alpha9)| Length = 950 Score = 30.4 bits (67), Expect = 2.0 Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 3/40 (7%) Frame = +1 Query: 49 PQLTRVYIHIYMYMQLCTV---LVYTSI*YTIIQCLSAAP 159 P++T V +++Y+ + +C V LV T + YT+++C SA P Sbjct: 689 PEVTLVDVNVYLIIAICAVSSLLVLTLLLYTVLRC-SAMP 727
>PCDA9_HUMAN (Q9Y5H5) Protocadherin alpha 9 precursor (PCDH-alpha9)| Length = 950 Score = 30.4 bits (67), Expect = 2.0 Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 3/40 (7%) Frame = +1 Query: 49 PQLTRVYIHIYMYMQLCTV---LVYTSI*YTIIQCLSAAP 159 P++T V +++Y+ + +C V LV T + YT+++C SA P Sbjct: 689 PEVTLVDVNVYLIIAICAVSSLLVLTLLLYTVLRC-SAMP 727
>SEPT3_MOUSE (Q9Z1S5) Neuronal-specific septin-3| Length = 465 Score = 29.6 bits (65), Expect = 3.4 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 3/73 (4%) Frame = -1 Query: 266 SYVWMPEGAPHQGKFVYGICYVACV---IYVCMAG*LRCGAADKHCIIVYQILVYTSTVH 96 S+ +P+ + + +C CV +YVCM + C VY ++ ++ V Sbjct: 354 SFQSVPQACWYLCSILSSVCVCVCVCVCMYVCMC------VMESAC--VYVCVMESACVC 405 Query: 95 NCIYIYICMYTRV 57 C+ +Y+C+Y+ V Sbjct: 406 VCMCVYVCVYSGV 418
>EFTS_SYMTH (Q67PB6) Elongation factor Ts (EF-Ts)| Length = 304 Score = 29.3 bits (64), Expect = 4.4 Identities = 18/61 (29%), Positives = 31/61 (50%) Frame = +3 Query: 84 VYAIMHGTSIY*YLIHNYTMFVRSSTPKLASHAYIDYTCHITYSVYELTLMRCTLRHPYI 263 V+A +HG LI + ++TP++A+H ++ CH EL L ++R Y+ Sbjct: 148 VHAYIHGDGRVGVLIE-----LTTATPEVAAHPEVEALCH------ELALQIASMRAQYV 196 Query: 264 R 266 R Sbjct: 197 R 197
>RPOA_EAVBU (P19811) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1 papain-like cysteine proteinase (EC 3.4.22.-) (PCP); Nsp2 cysteine proteinase (EC 3.4.22.-) (CP2) (CP); Nonstructural protein Length = 3175 Score = 28.5 bits (62), Expect = 7.6 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Frame = -1 Query: 230 GKFVYGICYVACVI---YVCMAG*LRCGAADKHCIIVYQILVYTSTVHNC 90 G ++YGICY V+ + C+ G D C V+ + V T T +C Sbjct: 831 GGWIYGICYFVLVVVSTFTCLPIKCGIGTRDPFCRRVFSVPV-TKTQEHC 879
>ARN_BPT4 (P39510) Anti-restriction endonuclease (Anti-rgl nuclease)| Length = 92 Score = 28.5 bits (62), Expect = 7.6 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +2 Query: 131 QLYNVCPQLHTEVSQPCIHRLHMPHNIFRIRTYLD 235 +LY P L+ + + LH+ +N F I TY D Sbjct: 20 KLYKFLPNLYHSIVNELVEELHLENNDFLIGTYKD 54
>KCMB2_RAT (Q811Q0) Calcium-activated potassium channel beta subunit 2| (Calcium-activated potassium channel, subfamily M, beta subunit 2) (Maxi K channel beta subunit 2) (BK channel beta subunit 2) (Slo-beta 2) (K(VCA)beta 2) (Charybdotoxin receptor beta Length = 235 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/57 (29%), Positives = 31/57 (54%) Frame = -2 Query: 367 QARAVLLSVPFIIRSIHCNHHLHPHACGSDVYLLRMYGCLRVHRIKVSSYTEYVMWH 197 +A+ LL+V I + +C+ +CG D + L Y CL+V+ SS + +++H Sbjct: 81 EAQRALLNVS-ITETFNCSF-----SCGPDCWKLSQYPCLQVYVNLTSSGEKLLLYH 131
>KCMB2_MOUSE (Q9CZM9) Calcium-activated potassium channel beta subunit 2| (Calcium-activated potassium channel, subfamily M, beta subunit 2) (Maxi K channel beta subunit 2) (BK channel beta subunit 2) (Slo-beta 2) (K(VCA)beta 2) (Charybdotoxin receptor bet Length = 235 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/57 (29%), Positives = 30/57 (52%) Frame = -2 Query: 367 QARAVLLSVPFIIRSIHCNHHLHPHACGSDVYLLRMYGCLRVHRIKVSSYTEYVMWH 197 +A+ LL+V I + +C+ +CG D + L Y CL+V+ SS +++H Sbjct: 81 EAQCALLNVS-ITETFNCSF-----SCGPDCWKLSQYPCLQVYVNLTSSGERLLLYH 131
>HUNB_SCICO (Q01790) Protein hunchback (Fragment)| Length = 50 Score = 28.1 bits (61), Expect = 9.9 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%) Frame = +2 Query: 23 LKRMLHTQHHNSHVYTYIYICI-CNYA 100 + R + T H SH TY Y C+ CNYA Sbjct: 21 VNRSMLTSHMKSHSNTYPYRCLDCNYA 47 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,228,270 Number of Sequences: 219361 Number of extensions: 1304162 Number of successful extensions: 3166 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3089 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3164 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
