ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet73e04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018226.1| Zea mays clone EL01N0561F09.c mRNA sequence 137 3e-29
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 123 4e-25
3gb|AC119747.1| Genomic sequence for Oryza sativa, Nipponbare str... 123 4e-25
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 123 4e-25
5dbj|AK104137.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 4e-25
6dbj|AK098999.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 4e-25
7dbj|AK072141.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 4e-25
8dbj|AK070779.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 4e-25
9dbj|AK059557.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 4e-25
10gb|AF095708.1|AF095708 Oryza sativa clone LS101 50S ribosomal pr... 115 1e-22
11gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 48 0.020
12gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 46 0.081
13gb|AC129323.6| Mus musculus BAC clone RP23-237M15 from 9, comple... 46 0.081
14gb|AC127309.4| Mus musculus BAC clone RP23-296L9 from 9, complet... 46 0.081
15emb|Z99129.1|HS425C14 Human DNA sequence from clone RP3-425C14 o... 44 0.32
16emb|AJ007764.1|BMU7764 Bungarus multicinctus mRNA for snake veno... 44 0.32
17gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 42 1.3
18gb|AC108835.8| Mus musculus chromosome 6, clone RP23-274E24, com... 42 1.3
19gb|AE016753.1| Mus musculus chromosome 10 high-growth region, se... 42 1.3
20gb|AC153366.7| Mus musculus 10 BAC RP23-243B24 (Roswell Park Can... 42 1.3
21gb|AF023909.1|AF023909 Rhodobacter sphaeroides nitrogen regulato... 42 1.3
22dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 1.3
23gb|AC005600.1| Homo sapiens chromosome 16, P1 clone 109-9G (LANL... 40 5.0
24gb|AC162522.6| Mus musculus chromosome 8, clone RP23-314A15, com... 40 5.0
25gb|AC096338.17| Rattus norvegicus X BAC CH230-95I19 (Children's ... 40 5.0
26gb|AC022062.10| Mus musculus chromosome 5, clone RP23-57P23, com... 40 5.0
27gb|AC093513.3| Homo sapiens chromosome 16 clone CTD-2517G10, com... 40 5.0
28ref|XM_846372.1| PREDICTED: Canis familiaris similar to carboxyl... 40 5.0
29gb|AC132386.3| Mus musculus BAC clone RP23-438O22 from chromosom... 40 5.0
30emb|Z21677.1|TMRIBPRSA Thermotoga maritima DNA for spc operon 40 5.0
31gb|CP000088.1| Thermobifida fusca YX, complete genome 40 5.0
32dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 5.0
33gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 5.0
34gb|AC158898.7| Mus musculus chromosome 8, clone RP23-153P23, com... 40 5.0
35gb|AC158955.2| Mus musculus chromosome 15, clone RP23-22C17, com... 40 5.0
36gb|AC120373.10| Mus musculus chromosome 15, clone RP24-512O2, co... 40 5.0
37gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 40 5.0
38gb|AE015927.1| Clostridium tetani E88, complete genome 40 5.0
39gb|AE000512.1| Thermotoga maritima MSB8, complete genome 40 5.0
40emb|AL627236.11| Mouse DNA sequence from clone RP23-384G12 on ch... 40 5.0
41dbj|AB016243.1| Homo sapiens gene for regulatory factor 2 of sod... 40 5.0 
>gb|BT018226.1| Zea mays clone EL01N0561F09.c mRNA sequence
          Length = 923

 Score =  137 bits (69), Expect = 3e-29
 Identities = 123/141 (87%)
 Strand = Plus / Minus

                                                                       
Query: 233 cttgatgttctcggcgaatggcatgccgaggagtgcaagcagcctttgcgcctcgttgtc 292
           |||||||||||| | ||| ||||||||||||||  | | ||||||   ||||||||||||
Sbjct: 663 cttgatgttctccgagaacggcatgccgaggaggaccaccagcctgaacgcctcgttgtc 604

                                                                       
Query: 293 ggtcttggcggtggtgacaatggtgacgtccataccgttcttcttgccgcccacctcgta 352
            ||||||||| ||||||| ||||  |||||||| ||||||||||| ||||||||||||||
Sbjct: 603 cgtcttggcgctggtgacgatggacacgtccatgccgttcttcttcccgcccacctcgta 544

                                
Query: 353 ggggatctccgggaacacgcc 373
            ||||||||||||||||||||
Sbjct: 543 cgggatctccgggaacacgcc 523
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  123 bits (62), Expect = 4e-25
 Identities = 122/142 (85%)
 Strand = Plus / Plus

                                                                           
Query: 232     acttgatgttctcggcgaatggcatgccgaggagtgcaagcagcctttgcgcctcgttgt 291
               ||||||||| ||| ||||| |||||||| ||||| |  ||||||||  | ||||||||||
Sbjct: 1413672 acttgatgtgctccgcgaacggcatgccaaggagggtgagcagcctgagagcctcgttgt 1413731

                                                                           
Query: 292     cggtcttggcggtggtgacaatggtgacgtccataccgttcttcttgccgcccacctcgt 351
               ||||||| ||||||||||| |||  ||||||||| || |||||||| || || |||||||
Sbjct: 1413732 cggtcttcgcggtggtgacgatgcagacgtccattccattcttcttcccaccgacctcgt 1413791

                                     
Query: 352     aggggatctccgggaacacgcc 373
               | ||||||||||||||||||||
Sbjct: 1413792 acgggatctccgggaacacgcc 1413813



 Score = 46.1 bits (23), Expect = 0.081
 Identities = 40/48 (83%)
 Strand = Plus / Plus

                                                               
Query: 171     cttcccctgcccttgctcatgaannnnnnncgcttcaaccttttcttc 218
               |||||||||||||||||||||||       ||||||||||| ||||||
Sbjct: 1413608 cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 1413655
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>gb|AC119747.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1293G11,
             from chromosome 3, complete sequence
          Length = 147806

 Score =  123 bits (62), Expect = 4e-25
 Identities = 122/142 (85%)
 Strand = Plus / Plus

                                                                         
Query: 232   acttgatgttctcggcgaatggcatgccgaggagtgcaagcagcctttgcgcctcgttgt 291
             ||||||||| ||| ||||| |||||||| ||||| |  ||||||||  | ||||||||||
Sbjct: 75175 acttgatgtgctccgcgaacggcatgccaaggagggtgagcagcctgagagcctcgttgt 75234

                                                                         
Query: 292   cggtcttggcggtggtgacaatggtgacgtccataccgttcttcttgccgcccacctcgt 351
             ||||||| ||||||||||| |||  ||||||||| || |||||||| || || |||||||
Sbjct: 75235 cggtcttcgcggtggtgacgatgcagacgtccattccattcttcttcccaccgacctcgt 75294

                                   
Query: 352   aggggatctccgggaacacgcc 373
             | ||||||||||||||||||||
Sbjct: 75295 acgggatctccgggaacacgcc 75316



 Score = 46.1 bits (23), Expect = 0.081
 Identities = 40/48 (83%)
 Strand = Plus / Plus

                                                             
Query: 171   cttcccctgcccttgctcatgaannnnnnncgcttcaaccttttcttc 218
             |||||||||||||||||||||||       ||||||||||| ||||||
Sbjct: 75111 cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 75158
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  123 bits (62), Expect = 4e-25
 Identities = 122/142 (85%)
 Strand = Plus / Plus

                                                                           
Query: 232     acttgatgttctcggcgaatggcatgccgaggagtgcaagcagcctttgcgcctcgttgt 291
               ||||||||| ||| ||||| |||||||| ||||| |  ||||||||  | ||||||||||
Sbjct: 1413670 acttgatgtgctccgcgaacggcatgccaaggagggtgagcagcctgagagcctcgttgt 1413729

                                                                           
Query: 292     cggtcttggcggtggtgacaatggtgacgtccataccgttcttcttgccgcccacctcgt 351
               ||||||| ||||||||||| |||  ||||||||| || |||||||| || || |||||||
Sbjct: 1413730 cggtcttcgcggtggtgacgatgcagacgtccattccattcttcttcccaccgacctcgt 1413789

                                     
Query: 352     aggggatctccgggaacacgcc 373
               | ||||||||||||||||||||
Sbjct: 1413790 acgggatctccgggaacacgcc 1413811



 Score = 46.1 bits (23), Expect = 0.081
 Identities = 40/48 (83%)
 Strand = Plus / Plus

                                                               
Query: 171     cttcccctgcccttgctcatgaannnnnnncgcttcaaccttttcttc 218
               |||||||||||||||||||||||       ||||||||||| ||||||
Sbjct: 1413606 cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 1413653
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>dbj|AK104137.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-H07, full
           insert sequence
          Length = 1009

 Score =  123 bits (62), Expect = 4e-25
 Identities = 122/142 (85%)
 Strand = Plus / Minus

                                                                       
Query: 232 acttgatgttctcggcgaatggcatgccgaggagtgcaagcagcctttgcgcctcgttgt 291
           ||||||||| ||| ||||| |||||||| ||||| |  ||||||||  | ||||||||||
Sbjct: 777 acttgatgtgctccgcgaacggcatgccaaggagggtgagcagcctgagagcctcgttgt 718

                                                                       
Query: 292 cggtcttggcggtggtgacaatggtgacgtccataccgttcttcttgccgcccacctcgt 351
           ||||||| ||||||||||| |||  ||||||||| || |||||||| || || |||||||
Sbjct: 717 cggtcttcgcggtggtgacgatgcagacgtccattccattcttcttcccaccgacctcgt 658

                                 
Query: 352 aggggatctccgggaacacgcc 373
           | ||||||||||||||||||||
Sbjct: 657 acgggatctccgggaacacgcc 636



 Score = 46.1 bits (23), Expect = 0.081
 Identities = 40/48 (83%)
 Strand = Plus / Minus

                                                           
Query: 171 cttcccctgcccttgctcatgaannnnnnncgcttcaaccttttcttc 218
           |||||||||||||||||||||||       ||||||||||| ||||||
Sbjct: 841 cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 794
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>dbj|AK098999.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099N22, full
           insert sequence
          Length = 1011

 Score =  123 bits (62), Expect = 4e-25
 Identities = 122/142 (85%)
 Strand = Plus / Minus

                                                                       
Query: 232 acttgatgttctcggcgaatggcatgccgaggagtgcaagcagcctttgcgcctcgttgt 291
           ||||||||| ||| ||||| |||||||| ||||| |  ||||||||  | ||||||||||
Sbjct: 784 acttgatgtgctccgcgaacggcatgccaaggagggtgagcagcctgagagcctcgttgt 725

                                                                       
Query: 292 cggtcttggcggtggtgacaatggtgacgtccataccgttcttcttgccgcccacctcgt 351
           ||||||| ||||||||||| |||  ||||||||| || |||||||| || || |||||||
Sbjct: 724 cggtcttcgcggtggtgacgatgcagacgtccattccattcttcttcccaccgacctcgt 665

                                 
Query: 352 aggggatctccgggaacacgcc 373
           | ||||||||||||||||||||
Sbjct: 664 acgggatctccgggaacacgcc 643



 Score = 46.1 bits (23), Expect = 0.081
 Identities = 40/48 (83%)
 Strand = Plus / Minus

                                                           
Query: 171 cttcccctgcccttgctcatgaannnnnnncgcttcaaccttttcttc 218
           |||||||||||||||||||||||       ||||||||||| ||||||
Sbjct: 848 cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 801
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>dbj|AK072141.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122I07, full
           insert sequence
          Length = 2916

 Score =  123 bits (62), Expect = 4e-25
 Identities = 122/142 (85%)
 Strand = Plus / Plus

                                                                       
Query: 232 acttgatgttctcggcgaatggcatgccgaggagtgcaagcagcctttgcgcctcgttgt 291
           ||||||||| ||| ||||| |||||||| ||||| |  ||||||||  | ||||||||||
Sbjct: 330 acttgatgtgctccgcgaacggcatgccaaggagggtgagcagcctgagagcctcgttgt 389

                                                                       
Query: 292 cggtcttggcggtggtgacaatggtgacgtccataccgttcttcttgccgcccacctcgt 351
           ||||||| ||||||||||| |||  ||||||||| || |||||||| || || |||||||
Sbjct: 390 cggtcttcgcggtggtgacgatgcagacgtccattccattcttcttcccaccgacctcgt 449

                                 
Query: 352 aggggatctccgggaacacgcc 373
           | ||||||||||||||||||||
Sbjct: 450 acgggatctccgggaacacgcc 471



 Score = 46.1 bits (23), Expect = 0.081
 Identities = 40/48 (83%)
 Strand = Plus / Plus

                                                           
Query: 171 cttcccctgcccttgctcatgaannnnnnncgcttcaaccttttcttc 218
           |||||||||||||||||||||||       ||||||||||| ||||||
Sbjct: 266 cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 313
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>dbj|AK070779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023072F09, full
           insert sequence
          Length = 1044

 Score =  123 bits (62), Expect = 4e-25
 Identities = 122/142 (85%)
 Strand = Plus / Minus

                                                                       
Query: 232 acttgatgttctcggcgaatggcatgccgaggagtgcaagcagcctttgcgcctcgttgt 291
           ||||||||| ||| ||||| |||||||| ||||| |  ||||||||  | ||||||||||
Sbjct: 806 acttgatgtgctccgcgaacggcatgccaaggagggtgagcagcctgagagcctcgttgt 747

                                                                       
Query: 292 cggtcttggcggtggtgacaatggtgacgtccataccgttcttcttgccgcccacctcgt 351
           ||||||| ||||||||||| |||  ||||||||| || |||||||| || || |||||||
Sbjct: 746 cggtcttcgcggtggtgacgatgcagacgtccattccattcttcttcccaccgacctcgt 687

                                 
Query: 352 aggggatctccgggaacacgcc 373
           | ||||||||||||||||||||
Sbjct: 686 acgggatctccgggaacacgcc 665



 Score = 46.1 bits (23), Expect = 0.081
 Identities = 40/48 (83%)
 Strand = Plus / Minus

                                                           
Query: 171 cttcccctgcccttgctcatgaannnnnnncgcttcaaccttttcttc 218
           |||||||||||||||||||||||       ||||||||||| ||||||
Sbjct: 870 cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 823
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>dbj|AK059557.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G09, full
           insert sequence
          Length = 1013

 Score =  123 bits (62), Expect = 4e-25
 Identities = 122/142 (85%)
 Strand = Plus / Minus

                                                                       
Query: 232 acttgatgttctcggcgaatggcatgccgaggagtgcaagcagcctttgcgcctcgttgt 291
           ||||||||| ||| ||||| |||||||| ||||| |  ||||||||  | ||||||||||
Sbjct: 781 acttgatgtgctccgcgaacggcatgccaaggagggtgagcagcctgagagcctcgttgt 722

                                                                       
Query: 292 cggtcttggcggtggtgacaatggtgacgtccataccgttcttcttgccgcccacctcgt 351
           ||||||| ||||||||||| |||  ||||||||| || |||||||| || || |||||||
Sbjct: 721 cggtcttcgcggtggtgacgatgcagacgtccattccattcttcttcccaccgacctcgt 662

                                 
Query: 352 aggggatctccgggaacacgcc 373
           | ||||||||||||||||||||
Sbjct: 661 acgggatctccgggaacacgcc 640



 Score = 46.1 bits (23), Expect = 0.081
 Identities = 40/48 (83%)
 Strand = Plus / Minus

                                                           
Query: 171 cttcccctgcccttgctcatgaannnnnnncgcttcaaccttttcttc 218
           |||||||||||||||||||||||       ||||||||||| ||||||
Sbjct: 845 cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 798
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>gb|AF095708.1|AF095708 Oryza sativa clone LS101 50S ribosomal protein L5 (rpl5) mRNA,
           nuclear gene encoding chloroplast protein, partial cds
          Length = 1025

 Score =  115 bits (58), Expect = 1e-22
 Identities = 121/142 (85%)
 Strand = Plus / Minus

                                                                       
Query: 232 acttgatgttctcggcgaatggcatgccgaggagtgcaagcagcctttgcgcctcgttgt 291
           ||||||||| ||| ||||| |||||||| ||||| |  ||||||||  | ||||||||||
Sbjct: 773 acttgatgtgctccgcgaacggcatgccaaggagggtgagcagcctgagagcctcgttgt 714

                                                                       
Query: 292 cggtcttggcggtggtgacaatggtgacgtccataccgttcttcttgccgcccacctcgt 351
           | ||||| ||||||||||| |||  ||||||||| || |||||||| || || |||||||
Sbjct: 713 ccgtcttcgcggtggtgacgatgcagacgtccattccattcttcttcccaccgacctcgt 654

                                 
Query: 352 aggggatctccgggaacacgcc 373
           | ||||||||||||||||||||
Sbjct: 653 acgggatctccgggaacacgcc 632



 Score = 46.1 bits (23), Expect = 0.081
 Identities = 40/48 (83%)
 Strand = Plus / Minus

                                                           
Query: 171 cttcccctgcccttgctcatgaannnnnnncgcttcaaccttttcttc 218
           |||||||||||||||||||||||       ||||||||||| ||||||
Sbjct: 837 cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 790
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                  
Query: 290    gtcggtcttggcggtggtgacaatggtgacgtccat 325
              |||||||||||||||||| || ||||||| ||||||
Sbjct: 318768 gtcggtcttggcggtggtcacgatggtgatgtccat 318733



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 229    caaacttgatgttctcggcg 248
              ||||||||||||||||||||
Sbjct: 126088 caaacttgatgttctcggcg 126107
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 288     ttgtcggtcttggcggtggtgacaatggtga 318
               ||||||||| ||||||||||||| |||||||
Sbjct: 1399346 ttgtcggtcgtggcggtggtgacgatggtga 1399316
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>gb|AC129323.6| Mus musculus BAC clone RP23-237M15 from 9, complete sequence
          Length = 170293

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 83     aaatatctaaaccaaactatgcaaaag 109
              ||||||||||| |||||||||||||||
Sbjct: 147126 aaatatctaaaacaaactatgcaaaag 147152
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>gb|AC127309.4| Mus musculus BAC clone RP23-296L9 from 9, complete sequence
          Length = 188083

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 83    aaatatctaaaccaaactatgcaaaag 109
             ||||||||||| |||||||||||||||
Sbjct: 13223 aaatatctaaaacaaactatgcaaaag 13249
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>emb|Z99129.1|HS425C14 Human DNA sequence from clone RP3-425C14 on chromosome 6q22 Contains the
              3' end of the HSF2 gene for  Heat Shock Transcription
              Factor 2 and the 3' end of a novel gene for KIAA1253
              protein (similar to tumor differentially expressed TDE1),
              complete sequence
          Length = 160203

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 45     aacatgaacagcaagtaataag 66
              ||||||||||||||||||||||
Sbjct: 119330 aacatgaacagcaagtaataag 119351
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>emb|AJ007764.1|BMU7764 Bungarus multicinctus mRNA for snake venom, clone pGEMT-BMNTL4
          Length = 317

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 296 cttggcggtggtgacaatggtg 317
           ||||||||||||||||||||||
Sbjct: 23  cttggcggtggtgacaatggtg 44
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 288     ttgtcggtcttggcggtggtg 308
               |||||||||||||||||||||
Sbjct: 2637964 ttgtcggtcttggcggtggtg 2637984
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>gb|AC108835.8| Mus musculus chromosome 6, clone RP23-274E24, complete sequence
          Length = 173365

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 51    aacagcaagtaataagagaca 71
             |||||||||||||||||||||
Sbjct: 55835 aacagcaagtaataagagaca 55855
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>gb|AE016753.1| Mus musculus chromosome 10 high-growth region, section 1 of 2 of the
              complete sequence
          Length = 350029

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 122    caaagtgggaagcaacaaagg 142
              |||||||||||||||||||||
Sbjct: 215842 caaagtgggaagcaacaaagg 215862
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>gb|AC153366.7| Mus musculus 10 BAC RP23-243B24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 184707

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 122    caaagtgggaagcaacaaagg 142
              |||||||||||||||||||||
Sbjct: 112057 caaagtgggaagcaacaaagg 112037
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>gb|AF023909.1|AF023909 Rhodobacter sphaeroides nitrogen regulatory protein GlnK (glnK)
           gene, complete cds; and putative ammonia transporter
           (amtB) gene, partial cds
          Length = 1142

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 288 ttgtcggtcttggcggtggtg 308
           |||||||||||||||||||||
Sbjct: 841 ttgtcggtcttggcggtggtg 821
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                            
Query: 281     cgcctcgttgtcggtcttggcggtggtgacaatggtgacgtccat 325
               |||||| | ||||||||||||||| ||||| ||| | ||||||||
Sbjct: 3269086 cgcctcttcgtcggtcttggcggtcgtgacgatgatcacgtccat 3269130
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>gb|AC005600.1| Homo sapiens chromosome 16, P1 clone 109-9G (LANL), complete sequence
          Length = 79586

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 169  tccttcccctgcccttgctc 188
            ||||||||||||||||||||
Sbjct: 7188 tccttcccctgcccttgctc 7207
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>gb|AC162522.6| Mus musculus chromosome 8, clone RP23-314A15, complete sequence
          Length = 187888

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    ttgacaaagtgggaagcaac 137
              ||||||||||||||||||||
Sbjct: 180956 ttgacaaagtgggaagcaac 180975
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>gb|AC096338.17| Rattus norvegicus X BAC CH230-95I19 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 236662

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    ttcccctgcccttgctcatg 191
              ||||||||||||||||||||
Sbjct: 235292 ttcccctgcccttgctcatg 235273
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>gb|AC022062.10| Mus musculus chromosome 5, clone RP23-57P23, complete sequence
          Length = 235363

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    tcacttccttcccctgccct 183
              ||||||||||||||||||||
Sbjct: 160671 tcacttccttcccctgccct 160690
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>gb|AC093513.3| Homo sapiens chromosome 16 clone CTD-2517G10, complete sequence
          Length = 72483

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   tccttcccctgcccttgctc 188
             ||||||||||||||||||||
Sbjct: 60672 tccttcccctgcccttgctc 60653
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>ref|XM_846372.1| PREDICTED: Canis familiaris similar to carboxyl-terminal modulator
           protein isoform a (LOC609163), mRNA
          Length = 1457

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 210 cttttcttcttgaactggtcaaac 233
           ||||||||| ||||||||||||||
Sbjct: 482 cttttcttcatgaactggtcaaac 459
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>gb|AC132386.3| Mus musculus BAC clone RP23-438O22 from chromosome 5, complete sequence
          Length = 170182

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    tcacttccttcccctgccct 183
              ||||||||||||||||||||
Sbjct: 154940 tcacttccttcccctgccct 154921
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>emb|Z21677.1|TMRIBPRSA Thermotoga maritima DNA for spc operon
          Length = 8142

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 294  gtcttggcggtggtgacaatggtgacgtccat 325
            ||||| ||||| ||||||||||||| ||||||
Sbjct: 6462 gtcttcgcggttgtgacaatggtgatgtccat 6431
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 346     cctcgtaggggatctccggg 365
               ||||||||||||||||||||
Sbjct: 1604286 cctcgtaggggatctccggg 1604267
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 334     tcttgccgcccacctcgtag 353
               ||||||||||||||||||||
Sbjct: 4241540 tcttgccgcccacctcgtag 4241521
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 288     ttgtcggtcttggcggtggt 307
               ||||||||||||||||||||
Sbjct: 4161579 ttgtcggtcttggcggtggt 4161560
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>gb|AC158898.7| Mus musculus chromosome 8, clone RP23-153P23, complete sequence
          Length = 212598

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    ttgacaaagtgggaagcaac 137
              ||||||||||||||||||||
Sbjct: 164114 ttgacaaagtgggaagcaac 164095
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>gb|AC158955.2| Mus musculus chromosome 15, clone RP23-22C17, complete sequence
          Length = 256999

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 168    ttccttcccctgcccttgct 187
              ||||||||||||||||||||
Sbjct: 199384 ttccttcccctgcccttgct 199403
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>gb|AC120373.10| Mus musculus chromosome 15, clone RP24-512O2, complete sequence
          Length = 159741

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 168    ttccttcccctgcccttgct 187
              ||||||||||||||||||||
Sbjct: 120060 ttccttcccctgcccttgct 120041
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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 216    ttcttgaactggtcaaacttgatgttct 243
              ||||||| ||||||| ||||||||||||
Sbjct: 979145 ttcttgatctggtcatacttgatgttct 979118
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>gb|AE015927.1| Clostridium tetani E88, complete genome
          Length = 2799251

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    caaccttttcttcttgaact 225
              ||||||||||||||||||||
Sbjct: 500392 caaccttttcttcttgaact 500373
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>gb|AE000512.1| Thermotoga maritima MSB8, complete genome
          Length = 1860725

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 294     gtcttggcggtggtgacaatggtgacgtccat 325
               ||||| ||||| ||||||||||||| ||||||
Sbjct: 1492391 gtcttcgcggttgtgacaatggtgatgtccat 1492422
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>emb|AL627236.11| Mouse DNA sequence from clone RP23-384G12 on chromosome 4, complete
             sequence
          Length = 201752

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   tcacttccttcccctgccct 183
             ||||||||||||||||||||
Sbjct: 95908 tcacttccttcccctgccct 95889
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>dbj|AB016243.1| Homo sapiens gene for regulatory factor 2 of sodium/hydrogen
            exchanger isoform A3, complete cds
          Length = 14728

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 169  tccttcccctgcccttgctc 188
            ||||||||||||||||||||
Sbjct: 5409 tccttcccctgcccttgctc 5428


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,482,773
Number of Sequences: 3902068
Number of extensions: 3482773
Number of successful extensions: 73404
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73111
Number of HSP's gapped (non-prelim): 292
length of query: 373
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 351
effective length of database: 17,147,199,772
effective search space: 6018667119972
effective search space used: 6018667119972
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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