ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet73d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chrom... 42 0.75
2gb|AC146060.4| Pan troglodytes BAC clone RP43-14P21 from 7, comp... 40 2.9
3gb|AC005536.2| Homo sapiens BAC clone GS1-115E6 from 7, complete... 40 2.9
4emb|BX004881.17| Zebrafish DNA sequence from clone CH211-141M16 ... 40 2.9
5gb|AY707771.1| Fragaria chiloensis latent virus isolate CFRA 908... 40 2.9
6emb|BX511227.7| Zebrafish DNA sequence from clone DKEY-100E19 in... 40 2.9
7gb|AC103876.2| Homo sapiens chromosome 15, clone CTD-2282O12, co... 40 2.9
8dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 40 2.9
9emb|BX005175.8| Zebrafish DNA sequence from clone DKEY-14H17 in ... 40 2.9

>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence
          Length = 3214944

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 41      acaaaggctgatttacatttt 61
               |||||||||||||||||||||
Sbjct: 1738417 acaaaggctgatttacatttt 1738437



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>gb|AC146060.4| Pan troglodytes BAC clone RP43-14P21 from 7, complete sequence
          Length = 192671

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     ggcagagtacaaaggctgat 52
              ||||||||||||||||||||
Sbjct: 103388 ggcagagtacaaaggctgat 103407



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>gb|AC005536.2| Homo sapiens BAC clone GS1-115E6 from 7, complete sequence
          Length = 165527

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    ggcagagtacaaaggctgat 52
             ||||||||||||||||||||
Sbjct: 68205 ggcagagtacaaaggctgat 68224



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>emb|BX004881.17| Zebrafish DNA sequence from clone CH211-141M16 in linkage group 13,
             complete sequence
          Length = 189908

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   aatacagtttggctagatgg 165
             ||||||||||||||||||||
Sbjct: 93966 aatacagtttggctagatgg 93947



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>gb|AY707771.1| Fragaria chiloensis latent virus isolate CFRA 9087 segment RNA 2,
            complete sequence
          Length = 2570

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 1    acgacaaacaaaattaccgcttac 24
            ||||||||| ||||||||||||||
Sbjct: 2401 acgacaaacgaaattaccgcttac 2378



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>emb|BX511227.7| Zebrafish DNA sequence from clone DKEY-100E19 in linkage group 14,
            complete sequence
          Length = 262038

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 48   ctgatttacattttttattt 67
            ||||||||||||||||||||
Sbjct: 5871 ctgatttacattttttattt 5852



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>gb|AC103876.2| Homo sapiens chromosome 15, clone CTD-2282O12, complete sequence
          Length = 113199

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    tgatttacattttttattta 68
             ||||||||||||||||||||
Sbjct: 45849 tgatttacattttttattta 45868



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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    tactactagttgtacccaat 148
              ||||||||||||||||||||
Sbjct: 150700 tactactagttgtacccaat 150681



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>emb|BX005175.8| Zebrafish DNA sequence from clone DKEY-14H17 in linkage group 11,
             complete sequence
          Length = 234851

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    gatttacattttttatttag 69
             ||||||||||||||||||||
Sbjct: 21220 gatttacattttttatttag 21201


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,315,283
Number of Sequences: 3902068
Number of extensions: 2315283
Number of successful extensions: 42181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42148
Number of HSP's gapped (non-prelim): 33
length of query: 230
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 208
effective length of database: 17,147,199,772
effective search space: 3566617552576
effective search space used: 3566617552576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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