ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet73c09 |
|---|---|
| Clone Library Name | barley_pub |
>WNK3_HUMAN (Q9BYP7) Serine/threonine-protein kinase WNK3 (EC 2.7.11.1)| (Protein kinase with no lysine 3) (Protein kinase, lysine-deficient 3) Length = 1743 Score = 36.2 bits (82), Expect = 0.019 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -2 Query: 393 SVVQIYHNVTNGVPPNALRRLKDPEMRAFILRCIGKPRN-RPSTADLLH 250 + QIY VT+G+ P + ++ DPE++ I CI + ++ R S DLL+ Sbjct: 353 NAAQIYRKVTSGIKPASFNKVTDPEVKEIIEGCIRQNKSERLSIRDLLN 401
>WNK4_RAT (Q7TPK6) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1)| (Protein kinase with no lysine 4) (Protein kinase, lysine-deficient 4) Length = 1222 Score = 35.8 bits (81), Expect = 0.025 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = -2 Query: 393 SVVQIYHNVTNGVPPNALRRLKDPEMRAFILRCIGKPRN-RPSTADLL 253 + QIY VT+G PN+ ++K PE++ I CI +N R + DLL Sbjct: 377 NAAQIYRKVTSGTKPNSFYKVKMPEVKEIIEGCIRTDKNERFTIQDLL 424
>WNK4_MOUSE (Q80UE6) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1)| (Protein kinase with no lysine 4) (Protein kinase, lysine-deficient 4) Length = 1222 Score = 35.8 bits (81), Expect = 0.025 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = -2 Query: 393 SVVQIYHNVTNGVPPNALRRLKDPEMRAFILRCIGKPRN-RPSTADLL 253 + QIY VT+G PN+ ++K PE++ I CI +N R + DLL Sbjct: 377 NAAQIYRKVTSGTKPNSFYKVKMPEVKEIIEGCIRTDKNERFTIQDLL 424
>WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1)| (Protein kinase with no lysine 4) (Protein kinase, lysine-deficient 4) Length = 1243 Score = 35.4 bits (80), Expect = 0.033 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = -2 Query: 393 SVVQIYHNVTNGVPPNALRRLKDPEMRAFILRCIGKPRN-RPSTADLL 253 + QIY VT+G PN+ ++K PE++ I CI +N R + DLL Sbjct: 380 NAAQIYRKVTSGRKPNSFHKVKIPEVKEIIEGCIRTDKNERFTIQDLL 427
>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1)| (Protein kinase with no lysine 2) (Protein kinase, lysine-deficient 2) Length = 2297 Score = 33.9 bits (76), Expect = 0.096 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = -2 Query: 393 SVVQIYHNVTNGVPPNALRRLKDPEMRAFILRCIGKPR-NRPSTADLL 253 + QIY VT G+ P + ++ DPE++ I CI K + R DLL Sbjct: 401 NAAQIYRKVTCGIKPASFEKVHDPEIKEIIGECICKNKEERYEIKDLL 448
>NRBP2_MOUSE (Q91V36) Nuclear receptor-binding protein 2| Length = 258 Score = 33.5 bits (75), Expect = 0.13 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 5/52 (9%) Frame = -2 Query: 393 SVVQIYHNVTNGVPPNALRR----LKDPEMRAFILRCIGK-PRNRPSTADLL 253 +V++I N V A+ R L DP MR FIL C+ + P RPS +LL Sbjct: 7 AVLEIQANGDTRVTEEAIARARHSLSDPNMREFILSCLARDPARRPSAHNLL 58
>NRBP2_HUMAN (Q9NSY0) Nuclear receptor-binding protein 2 (Transformation-related| protein 16) Length = 258 Score = 32.3 bits (72), Expect = 0.28 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 5/52 (9%) Frame = -2 Query: 393 SVVQIYHNVTNGVPPNALRR----LKDPEMRAFILRCIGK-PRNRPSTADLL 253 +V++I N V A+ R L DP MR FIL C+ + P RPS LL Sbjct: 7 AVLEIQTNGDTRVTEEAIARARHSLSDPNMREFILCCLARDPARRPSAHSLL 58
>PKPA_PHYBL (Q01577) Serine/threonine-protein kinase pkpA (EC 2.7.11.1)| Length = 613 Score = 32.3 bits (72), Expect = 0.28 Identities = 13/47 (27%), Positives = 25/47 (53%) Frame = -2 Query: 393 SVVQIYHNVTNGVPPNALRRLKDPEMRAFILRCIGKPRNRPSTADLL 253 + VQ++ VT + P L R++DPE+ + C+ R + ++L Sbjct: 218 NAVQVFKKVTQTIKPECLSRVQDPELLTLVNICLTPEDERMTAQEIL 264
>WNK1_RAT (Q9JIH7) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1)| (Protein kinase with no lysine 1) (Protein kinase, lysine-deficient 1) Length = 2126 Score = 32.3 bits (72), Expect = 0.28 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Frame = -2 Query: 393 SVVQIYHNVTNGVPPNALRRLKDPEMRAFILRCIGKPRN-RPSTADLLH 250 + QIY VT+GV P + ++ PE++ I CI + ++ R S DLL+ Sbjct: 427 NAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 475
>WNK1_MOUSE (P83741) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1)| (Protein kinase with no lysine 1) (Protein kinase, lysine-deficient 1) Length = 2377 Score = 32.3 bits (72), Expect = 0.28 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Frame = -2 Query: 393 SVVQIYHNVTNGVPPNALRRLKDPEMRAFILRCIGKPRN-RPSTADLLH 250 + QIY VT+GV P + ++ PE++ I CI + ++ R S DLL+ Sbjct: 427 NAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 475
>WNK1_HUMAN (Q9H4A3) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1)| (Protein kinase with no lysine 1) (Protein kinase, lysine-deficient 1) (Kinase deficient protein) Length = 2382 Score = 32.3 bits (72), Expect = 0.28 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Frame = -2 Query: 393 SVVQIYHNVTNGVPPNALRRLKDPEMRAFILRCIGKPRN-RPSTADLLH 250 + QIY VT+GV P + ++ PE++ I CI + ++ R S DLL+ Sbjct: 427 NAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 475
>KDSB_PSEAE (Q9HZM5) 3-deoxy-manno-octulosonate cytidylyltransferase (EC| 2.7.7.38) (CMP-KDO synthetase) (CMP-2-keto-3-deoxyoctulosonic acid synthetase) (CKS) Length = 254 Score = 29.6 bits (65), Expect = 1.8 Identities = 25/90 (27%), Positives = 39/90 (43%) Frame = +1 Query: 82 LDSAYMALLLANH*QQRRS*YYIQSNPPSPRVQRGRRRALAQSAGGVVVDAVKERVVQEV 261 + A+ ++ A + R +Q P +QR +A +A VVV ER++ Sbjct: 1 MTQAFTVVIPARYASTRLPGKPLQDIAGQPMIQRVWNQARKSAASRVVVATDDERILAAC 60 Query: 262 GGRGAVPRLADAAQDEGPHLRVLEAAERVG 351 G GA L A + G R+ E A R+G Sbjct: 61 QGFGAEALLTRAEHNSGTD-RLEEVASRLG 89
>Y2095_MYCTU (Q10704) Hypothetical protein Rv2095c/MT2156 precursor| Length = 316 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/65 (30%), Positives = 26/65 (40%) Frame = +1 Query: 193 RALAQSAGGVVVDAVKERVVQEVGGRGAVPRLADAAQDEGPHLRVLEAAERVGRHAVGDV 372 RALA G V A + + + GAV +A+ A E P + AA R R D Sbjct: 97 RALADIPGVVDPQAARSAIAKIAAAAGAVAAVAEQAPTESPAAAAVRAAVRNSRALTIDY 156 Query: 373 VVDLH 387 H Sbjct: 157 YAASH 161
>NRBP_PONPY (Q5RBH9) Nuclear receptor-binding protein| Length = 535 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = -2 Query: 348 NALRRLKDPEMRAFILRCI-GKPRNRPSTADLL 253 +A++ L+DP R FI +C+ +P RP+ +LL Sbjct: 290 SAIQLLEDPLQREFIQKCLQSEPARRPTARELL 322
>NRBP_MACFA (Q4R8X0) Nuclear receptor-binding protein| Length = 535 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = -2 Query: 348 NALRRLKDPEMRAFILRCI-GKPRNRPSTADLL 253 +A++ L+DP R FI +C+ +P RP+ +LL Sbjct: 290 SAIQLLEDPLQREFIQKCLQSEPARRPTARELL 322
>NRBP_HUMAN (Q9UHY1) Nuclear receptor-binding protein| Length = 535 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = -2 Query: 348 NALRRLKDPEMRAFILRCI-GKPRNRPSTADLL 253 +A++ L+DP R FI +C+ +P RP+ +LL Sbjct: 290 SAIQLLEDPLQREFIQKCLQSEPARRPTARELL 322
>ZMYM3_HUMAN (Q14202) Zinc finger MYM-type protein 3 (Zinc finger protein 261)| (DXS6673E protein) Length = 1370 Score = 28.5 bits (62), Expect = 4.1 Identities = 9/19 (47%), Positives = 14/19 (73%) Frame = +2 Query: 23 DHKLHKFCSPACWSTNQTT 79 D +++FCSP+CW+ Q T Sbjct: 563 DRTVYQFCSPSCWTKFQRT 581
>PHSG_PASMU (Q9CN90) Glycogen phosphorylase (EC 2.4.1.1)| Length = 818 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -2 Query: 378 YHNVTNGVPPNALRRLKDPEMRAFILRCIGKPRNR 274 + NVTNG+ P + +PE+ A R IGK R Sbjct: 466 FTNVTNGITPRRWIGVANPELSALFDRYIGKEWRR 500
>DNLJ_THET8 (P26996) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase| [NAD+]) (Tth DNA ligase) Length = 676 Score = 28.5 bits (62), Expect = 4.1 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = +1 Query: 187 RRRALAQSAGGVVVDAVKERVVQEVGGRGAVPRLADAAQ--DEGPHLRVLEAAERVGR 354 +RRAL A GVVV + + +E+G PR A A + E R+L+ +VGR Sbjct: 280 KRRALPFEADGVVVKLDELALWRELGYTARAPRFAIAYKFPAEEKETRLLDVVFQVGR 337
>CRTI_STRGR (P54981) Phytoene dehydrogenase (EC 1.14.99.-) (Phytoene| desaturase) Length = 507 Score = 28.5 bits (62), Expect = 4.1 Identities = 28/69 (40%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Frame = +1 Query: 193 RALAQSAGGVVVDAVKERVVQEVGGRGAVPR-LADAAQDEGPHLRVLEAAERVGRHA--V 363 RALA A +D V V GG A+PR +ADAA D G LR + R+ R V Sbjct: 205 RALAAYAVIAYMDTVAG-VYFPRGGMHALPRAMADAASDAGAVLRYGQRVTRLERSGDRV 263 Query: 364 GDVVVDLHH 390 VV D H Sbjct: 264 TAVVTDQEH 272
>ZMYM3_MOUSE (Q9JLM4) Zinc finger MYM-type protein 3 (Zinc finger protein 261)| (DXHXS6673E protein) Length = 1370 Score = 28.1 bits (61), Expect = 5.3 Identities = 9/19 (47%), Positives = 14/19 (73%) Frame = +2 Query: 23 DHKLHKFCSPACWSTNQTT 79 D +++FCSP+CW+ Q T Sbjct: 565 DRTVYQFCSPSCWTKFQHT 583
>Y893_TREPA (O83863) UPF0090 protein TP0893| Length = 156 Score = 28.1 bits (61), Expect = 5.3 Identities = 29/67 (43%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Frame = +1 Query: 166 SPRVQR--GRRRALAQSAGGVVVDAVKERVVQEVGGRGAVPRLADAAQDEGPHLRVLEAA 339 S RVQ+ GR RA+ SAGGV +D V RV R VPRL L V Sbjct: 36 SRRVQQAQGRARAVIYSAGGVTLD-VCARV-----HRILVPRLQALGGVRTVFLEVGSPG 89 Query: 340 ERVGRHA 360 ERV R+A Sbjct: 90 ERVIRNA 96
>SPEG_HUMAN (Q15772) Striated muscle preferentially expressed protein kinase (EC| 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3223 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = +1 Query: 172 RVQRGRRRALAQSAGGVVVDAVKERVVQEVGGRGAVPRLADAAQDE-GPH 318 R+Q R+R L V ++ +++ +GGR PR+A AA E PH Sbjct: 2066 RLQALRQRLLRGGPEDGKVSGLRGPLLESLGGRARDPRMARAASSEAAPH 2115
>SPEG_RAT (Q63638) Striated muscle-specific serine/threonine protein kinase (EC| 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3259 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = +1 Query: 172 RVQRGRRRALAQSAGGVVVDAVKERVVQEVGGRGAVPRLADAAQDE-GPH 318 R+Q R+R L V ++ +++ +GGR PR+A AA E PH Sbjct: 2071 RLQALRQRLLRGGPEDGKVSGLRGPLLESLGGRARDPRMARAASSEAAPH 2120
>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase (EC| 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3262 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = +1 Query: 172 RVQRGRRRALAQSAGGVVVDAVKERVVQEVGGRGAVPRLADAAQDE-GPH 318 R+Q R+R L V ++ +++ +GGR PR+A AA E PH Sbjct: 2071 RLQALRQRLLRGGPEDGKVSGLRGPLLESLGGRARDPRMARAASSEAAPH 2120
>TAOK3_CHICK (Q9I9E0) Serine/threonine-protein kinase TAO3 (EC 2.7.11.1)| (Thousand and one amino acid protein 3) (Kinase from chicken) Length = 898 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Frame = -2 Query: 381 IYHNVTNGVPPNALRRLKDPEMRAFILRCIGK-PRNRPSTADLL 253 +YH N P D R F+ C+ K P+ RPS+ADLL Sbjct: 230 LYHIAQNDSPTLQSNEWSD-SFRGFVDYCLQKIPQERPSSADLL 272
>SYG_AERPE (Q9YBF8) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA| ligase) (GlyRS) Length = 583 Score = 28.1 bits (61), Expect = 5.3 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 10/81 (12%) Frame = +1 Query: 163 PSPRVQRGRRRALAQSAGGVVVDAVKERVVQEVG--GRGAVPRLADA-----AQDEGP-- 315 P P V + RR + ++A G + + + V++E+G G G + RLA + A E P Sbjct: 358 PKPIVVKKRRVVVDKAAIGRALKSRAKTVLEELGRMGEGELERLAASNRAVVAGVELPPG 417 Query: 316 HLRVLEAAERV-GRHAVGDVV 375 LR++E E+V GR V VV Sbjct: 418 SLRIVEVEEKVSGRRFVPHVV 438
>TRPB2_MAIZE (P43284) Tryptophan synthase beta chain 2, chloroplast precursor| (EC 4.2.1.20) (Orange pericarp 2) (Fragment) Length = 443 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/43 (34%), Positives = 19/43 (44%) Frame = +1 Query: 160 PPSPRVQRGRRRALAQSAGGVVVDAVKERVVQEVGGRGAVPRL 288 PP P + RRR ++A G V A E+G A P L Sbjct: 3 PPPPAPEGRRRRGRGRNAAGQAVAAEASPAAVEMGNGAAAPGL 45
>HAM1_GLOVI (Q7NN81) HAM1 protein homolog| Length = 195 Score = 27.7 bits (60), Expect = 6.9 Identities = 21/59 (35%), Positives = 25/59 (42%) Frame = +1 Query: 193 RALAQSAGGVVVDAVKERVVQEVGGRGAVPRLADAAQDEGPHLRVLEAAERVGRHAVGD 369 R L G VV A + V+E G A E L+ L AAER G +VGD Sbjct: 19 RRLLAGTGWVVQAAPPDFAVEETGTTFA----------ENARLKALAAAERTGEWSVGD 67
>PAOX_HUMAN (Q6QHF9) Peroxisomal N1-acetyl-spermine/spermidine oxidase (EC| 1.5.3.11) (Polyamine oxidase) Length = 648 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/31 (48%), Positives = 16/31 (51%) Frame = +1 Query: 259 VGGRGAVPRLADAAQDEGPHLRVLEAAERVG 351 + G GA RL PHLRVLEA R G Sbjct: 22 IAGLGAAQRLC--GHSAFPHLRVLEATARAG 50
>DNLI_METKA (Q8TWN3) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 559 Score = 27.3 bits (59), Expect = 9.0 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 4/72 (5%) Frame = +1 Query: 172 RVQRGRRRALAQSAGGVVVDAVKERVVQEVGGRGAVPRLADAAQ----DEGPHLRVLEAA 339 R R + LAQ+A V + + EVGG+GAV D A+ +G +RV Sbjct: 218 RPMRPIKPMLAQAARNV------KEALAEVGGKGAVEIKLDGARVQVHSDGEEVRVYTRR 271 Query: 340 ERVGRHAVGDVV 375 HA+ D+V Sbjct: 272 IEDVTHALPDIV 283
>PROB_PELCD (Q3A1D9) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)| (GK) Length = 373 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = +1 Query: 223 VVDAVKERVVQEVGGRGAVPRLADAAQDEGPHLRVLEAAERVGRHAVGDVVVD 381 V++ + E + Q GG G+V A +EAA+R + VG ++VD Sbjct: 194 VIERITEDIEQMAGGAGSVVGTGGMATK-------VEAAKRATLYGVGTIIVD 239
>FLAB5_PYRHO (O58286) Flagellin B5 precursor| Length = 255 Score = 27.3 bits (59), Expect = 9.0 Identities = 19/56 (33%), Positives = 25/56 (44%) Frame = +1 Query: 145 YIQSNPPSPRVQRGRRRALAQSAGGVVVDAVKERVVQEVGGRGAVPRLADAAQDEG 312 Y SNPP + +AG +D RVV G R AV R D+ +D+G Sbjct: 62 YTPSNPPGSGKITRLVVYVTPNAGSGGIDLAHVRVVLSDGKRMAVYRYYDSDKDQG 117
>ATPG_RHILO (Q98EV7) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1| sector gamma subunit) Length = 294 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/58 (27%), Positives = 26/58 (44%) Frame = +1 Query: 172 RVQRGRRRALAQSAGGVVVDAVKERVVQEVGGRGAVPRLADAAQDEGPHLRVLEAAER 345 +++R + A A + +V + Q +GG G P L + HL V+ AER Sbjct: 31 KLRRAQEAAEAARPYSERMGSVLANITQAIGGGGDAPALMTGTGKDNVHLLVVCTAER 88 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,359,738 Number of Sequences: 219361 Number of extensions: 690956 Number of successful extensions: 2286 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 2238 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2285 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
