| Clone Name | rbaet73b06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC157472.3| Medicago truncatula chromosome 7 BAC clone mth2-41h16, complete sequence Length = 114287 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Minus Query: 123 ctagtagtagtagtagtcttct 144 |||||||||||||||||||||| Sbjct: 38908 ctagtagtagtagtagtcttct 38887
>gb|AY935269.1| Antirrhinum majus plena (PLE) gene, complete sequence Length = 85060 Score = 42.1 bits (21), Expect = 0.45 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 agtagtagtagtagtcttctt 145 ||||||||||||||||||||| Sbjct: 39262 agtagtagtagtagtcttctt 39282
>emb|BX548160.13| Zebrafish DNA sequence from clone DKEY-25G11 in linkage group 11, complete sequence Length = 237930 Score = 42.1 bits (21), Expect = 0.45 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 ctcactagtagtagtagtagt 139 ||||||||||||||||||||| Sbjct: 151499 ctcactagtagtagtagtagt 151519
>emb|AL807380.6| Mouse DNA sequence from clone RP23-192G18 on chromosome 2, complete sequence Length = 208614 Score = 42.1 bits (21), Expect = 0.45 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 agtagtagtagtagtcttctt 145 ||||||||||||||||||||| Sbjct: 191598 agtagtagtagtagtcttctt 191618
>gb|AY392893.1| Homo sapiens clone RA702-A2-21.fa immunoglobulin heavy chain mRNA, partial cds Length = 384 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 tagtagtagtagtagtcttc 143 |||||||||||||||||||| Sbjct: 302 tagtagtagtagtagtcttc 283
>gb|AC147047.2| Mus musculus BAC clone RP23-97D19 from chromosome 6, complete sequence Length = 239653 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 tcactagtagtagtagtagt 139 |||||||||||||||||||| Sbjct: 137307 tcactagtagtagtagtagt 137288
>gb|AC123810.4| Mus musculus BAC clone RP24-178B17 from chromosome 8, complete sequence Length = 161521 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 tagtagtagtagtagtcttc 143 |||||||||||||||||||| Sbjct: 103921 tagtagtagtagtagtcttc 103902
>emb|Z81503.1|CEF14F7 Caenorhabditis elegans Cosmid F14F7, complete sequence Length = 25468 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 tagtagtagtagtagtcttc 143 |||||||||||||||||||| Sbjct: 6460 tagtagtagtagtagtcttc 6441
>gb|AC165244.2| Mus musculus BAC clone RP24-498C9 from chromosome 14, complete sequence Length = 191747 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 tagtagtagtagtagtcttc 143 |||||||||||||||||||| Sbjct: 123384 tagtagtagtagtagtcttc 123403
>gb|DQ421402.1| Ictalurus punctatus clone BM1-31 microsatellite sequences Length = 386 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 tagtagtagtagtagtcttc 143 |||||||||||||||||||| Sbjct: 185 tagtagtagtagtagtcttc 204
>dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103 Length = 1282697 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 actagtagtagtagtagtct 141 |||||||||||||||||||| Sbjct: 214863 actagtagtagtagtagtct 214844
>emb|BX548024.4| Zebrafish DNA sequence from clone DKEY-218H11 in linkage group 2, complete sequence Length = 218565 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 tagtagtagtagtagtcttc 143 |||||||||||||||||||| Sbjct: 209454 tagtagtagtagtagtcttc 209473
>emb|BX088564.10| Zebrafish DNA sequence from clone CH211-239H19 in linkage group 4, complete sequence Length = 132891 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 tagtagtagtagtagtcttc 143 |||||||||||||||||||| Sbjct: 45015 tagtagtagtagtagtcttc 44996
>gb|AY108292.1| Zea mays PCO081562 mRNA sequence Length = 976 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 actagtagtagtagtagtct 141 |||||||||||||||||||| Sbjct: 701 actagtagtagtagtagtct 682
>gb|AC149051.4| Mus musculus BAC clone RP24-325F10 from 8, complete sequence Length = 184939 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 tagtagtagtagtagtcttc 143 |||||||||||||||||||| Sbjct: 67295 tagtagtagtagtagtcttc 67276
>gb|AC151476.1| Mus musculus BAC clone RP23-287H13 from 8, complete sequence Length = 155220 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 tagtagtagtagtagtcttc 143 |||||||||||||||||||| Sbjct: 140255 tagtagtagtagtagtcttc 140236
>gb|M13420.1|HUM18BPD Human bcl-2 gene (chromosome 18) translocation to Ig H-chain locus J6 gene (chromosome 14) breakpoint, from follicular lymphoma 1144 Length = 165 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 tagtagtagtagtagtcttc 143 |||||||||||||||||||| Sbjct: 119 tagtagtagtagtagtcttc 100
>dbj|D63338.1| Aspergillus oryzae DNA for tannase, complete cds Length = 3561 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 actagtagtagtagtagtct 141 |||||||||||||||||||| Sbjct: 1018 actagtagtagtagtagtct 999
>gb|AC113013.15| Mus musculus chromosome 7, clone RP23-174K7, complete sequence Length = 235823 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 124 tagtagtagtagtagtctt 142 ||||||||||||||||||| Sbjct: 222785 tagtagtagtagtagtctt 222767
>ref|NM_179537.1| Arabidopsis thaliana ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) AT1G69530 (ATEXPA1) transcript variant AT1G69530.2 mRNA, complete cds Length = 1309 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 123 ctagtagtagtagtagtct 141 ||||||||||||||||||| Sbjct: 1131 ctagtagtagtagtagtct 1149
>ref|NM_179538.1| Arabidopsis thaliana ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) AT1G69530 (ATEXPA1) transcript variant AT1G69530.3 mRNA, complete cds Length = 1322 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 123 ctagtagtagtagtagtct 141 ||||||||||||||||||| Sbjct: 1148 ctagtagtagtagtagtct 1166
>ref|NM_105622.2| Arabidopsis thaliana ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) AT1G69530 (ATEXPA1) transcript variant AT1G69530.1 mRNA, complete cds Length = 1396 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 123 ctagtagtagtagtagtct 141 ||||||||||||||||||| Sbjct: 1222 ctagtagtagtagtagtct 1240
>ref|NM_179846.2| Arabidopsis thaliana CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2); catalytic AT2G31955 (CNX2) transcript variant AT2G31955.1 mRNA, complete cds Length = 1601 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 119 ctcactagtagtagtagta 137 ||||||||||||||||||| Sbjct: 227 ctcactagtagtagtagta 209
>ref|NM_001036384.1| Arabidopsis thaliana CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2); catalytic AT2G31955 (CNX2) transcript variant AT2G31955.2 mRNA, complete cds Length = 1623 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 119 ctcactagtagtagtagta 137 ||||||||||||||||||| Sbjct: 249 ctcactagtagtagtagta 231
>ref|NM_100056.1| Arabidopsis thaliana unknown protein AT1G01730 mRNA, complete cds Length = 859 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 504 cactagtagtagtagtagt 486
>ref|XM_631367.1| Dictyostelium discoideum hypothetical protein (DDB0219395), partial mRNA Length = 1833 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 122 actagtagtagtagtagtc 140 ||||||||||||||||||| Sbjct: 759 actagtagtagtagtagtc 741
>gb|AY671365.1| Homo sapiens clone 4d491 immunoglobulin mu heavy chain mRNA, partial cds Length = 650 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 126 gtagtagtagtagtcttct 144 ||||||||||||||||||| Sbjct: 335 gtagtagtagtagtcttct 317
>ref|XM_708605.1| Candida albicans SC5314 hypothetical protein (CaO19.8651), mRNA Length = 585 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 120 tcactagtagtagtagtag 138 ||||||||||||||||||| Sbjct: 38 tcactagtagtagtagtag 20
>ref|XM_708560.1| Candida albicans SC5314 hypothetical protein (CaO19.1049), mRNA Length = 585 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 120 tcactagtagtagtagtag 138 ||||||||||||||||||| Sbjct: 38 tcactagtagtagtagtag 20
>ref|XM_706470.1| Candida albicans SC5314 ribokinase (CaO19.6344), mRNA Length = 1173 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 220 cactagtagtagtagtagt 202
>gb|AC084163.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-287D23, complete sequence Length = 214292 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 80684 cactagtagtagtagtagt 80702
>gb|AC004931.1| Homo sapiens PAC clone RP5-922I23 from 7, complete sequence Length = 145844 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 125453 cactagtagtagtagtagt 125471
>ref|XM_753574.1| Ustilago maydis 521 hypothetical protein (UM02520.1) partial mRNA Length = 3015 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 1588 cactagtagtagtagtagt 1570
>emb|CR759874.20| Zebrafish DNA sequence from clone CH211-214H24 in linkage group 20, complete sequence Length = 223471 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 124 tagtagtagtagtagtctt 142 ||||||||||||||||||| Sbjct: 14980 tagtagtagtagtagtctt 14962
>emb|CR382337.11| Zebrafish DNA sequence from clone DKEY-26N5 in linkage group 25, complete sequence Length = 217882 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 120 tcactagtagtagtagtag 138 ||||||||||||||||||| Sbjct: 138030 tcactagtagtagtagtag 138012
>ref|XM_802408.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053507979.50) partial mRNA Length = 3072 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 124 tagtagtagtagtagtctt 142 ||||||||||||||||||| Sbjct: 234 tagtagtagtagtagtctt 252
>gb|AC133518.3| Mus musculus BAC clone RP23-138G24 from chromosome 7, complete sequence Length = 195464 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 158004 cactagtagtagtagtagt 157986
>gb|AC005223.1| Arabidopsis thaliana chromosome I BAC T5A14, complete sequence Length = 87967 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 122 actagtagtagtagtagtc 140 ||||||||||||||||||| Sbjct: 9011 actagtagtagtagtagtc 8993
>ref|XM_806971.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511321.70) partial mRNA Length = 3066 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 124 tagtagtagtagtagtctt 142 ||||||||||||||||||| Sbjct: 231 tagtagtagtagtagtctt 249
>gb|AC118248.11| Mus musculus chromosome 8, clone RP23-379H17, complete sequence Length = 182510 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 75937 cactagtagtagtagtagt 75955
>gb|AC121918.3| Mus musculus BAC clone RP24-195D23 from chromosome 2, complete sequence Length = 179270 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 124 tagtagtagtagtagtctt 142 ||||||||||||||||||| Sbjct: 165396 tagtagtagtagtagtctt 165378
>gb|AC102613.7| Mus musculus chromosome 1, clone RP23-418C16, complete sequence Length = 201275 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 182992 cactagtagtagtagtagt 182974
>gb|AC154498.2| Mus musculus BAC clone RP24-112F5 from chromosome 17, complete sequence Length = 153547 Score = 38.2 bits (19), Expect = 7.0 Identities = 28/31 (90%) Strand = Plus / Plus Query: 109 tgcatacatactcactagtagtagtagtagt 139 |||||||||| | | |||||||||||||||| Sbjct: 148101 tgcatacatatttagtagtagtagtagtagt 148131
>ref|XM_662993.1| Cryptosporidium hominis TU502 PP2C-related protein phosphatase (Chro.60131) partial mRNA Length = 2148 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 870 cactagtagtagtagtagt 888
>gb|AC145773.1| Pan troglodytes BAC clone RP43-32M11 from 7, complete sequence Length = 190630 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 38175 cactagtagtagtagtagt 38193
>gb|AC161448.4| Mus musculus BAC clone RP24-149K9 from chromosome 6, complete sequence Length = 190414 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 183201 cactagtagtagtagtagt 183183
>emb|BX957253.12| Zebrafish DNA sequence from clone DKEY-234L14 in linkage group 7, complete sequence Length = 197310 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 124 tagtagtagtagtagtctt 142 ||||||||||||||||||| Sbjct: 105653 tagtagtagtagtagtctt 105635
>gb|AE014837.1| Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence Length = 257757 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 124 tagtagtagtagtagtctt 142 ||||||||||||||||||| Sbjct: 80408 tagtagtagtagtagtctt 80390
>gb|BT009077.1| Triticum aestivum clone wip1c.pk005.e10:fis, full insert mRNA sequence Length = 961 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 124 tagtagtagtagtagtctt 142 ||||||||||||||||||| Sbjct: 582 tagtagtagtagtagtctt 600
>gb|AY096557.1| Arabidopsis thaliana putative molybdopterin synthase (CNX2) (At2g31955) mRNA, complete cds Length = 1204 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 119 ctcactagtagtagtagta 137 ||||||||||||||||||| Sbjct: 126 ctcactagtagtagtagta 108
>gb|AY065416.1| Arabidopsis thaliana unknown protein (At1g01730) mRNA, complete cds Length = 851 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 504 cactagtagtagtagtagt 486
>gb|AY065265.1| Arabidopsis thaliana unknown protein (At2g31955) mRNA, complete cds Length = 1617 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 119 ctcactagtagtagtagta 137 ||||||||||||||||||| Sbjct: 227 ctcactagtagtagtagta 209
>gb|AF360291.1| Arabidopsis thaliana putative expansin protein At-EXP1 (At1g69530) mRNA, complete cds Length = 1339 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 123 ctagtagtagtagtagtct 141 ||||||||||||||||||| Sbjct: 1131 ctagtagtagtagtagtct 1149
>emb|BX538350.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 1/4 Length = 287050 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 115760 cactagtagtagtagtagt 115742
>emb|AL161551.2|ATCHRIV51 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 51 Length = 197114 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 73767 cactagtagtagtagtagt 73785
>emb|AL021768.1|ATF24J7 Arabidopsis thaliana DNA chromosome 4, BAC clone F24J7 (ESSA project) Length = 86554 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 76407 cactagtagtagtagtagt 76425
>gb|AC102076.9| Mus musculus chromosome 7, clone RP23-401P12, complete sequence Length = 199219 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 124 tagtagtagtagtagtctt 142 ||||||||||||||||||| Sbjct: 25454 tagtagtagtagtagtctt 25436
>emb|BX890575.23| Zebrafish DNA sequence from clone CH211-235C4 in linkage group 14, complete sequence Length = 204730 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 124 tagtagtagtagtagtctt 142 ||||||||||||||||||| Sbjct: 160040 tagtagtagtagtagtctt 160022
>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 Length = 2324132 Score = 38.2 bits (19), Expect = 7.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 117 tactcactagtagtagtagtagt 139 |||| |||||||||||||||||| Sbjct: 2064316 tacttactagtagtagtagtagt 2064294
>gb|AC006533.8| Arabidopsis thaliana chromosome 2 clone F20M17 map nga361, complete sequence Length = 100665 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 119 ctcactagtagtagtagta 137 ||||||||||||||||||| Sbjct: 290 ctcactagtagtagtagta 272
>gb|AC087336.5| Mus musculus chromosome 6, clone RP23-446O7, complete sequence Length = 181773 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 61781 cactagtagtagtagtagt 61763
>gb|DQ353855.1| Triticum aestivum homeodomain-leucine zipper transcription factor TaHDZipI-1 mRNA, complete cds Length = 963 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 937 cactagtagtagtagtagt 919
>gb|AC104806.3| Homo sapiens BAC clone RP11-584P21 from 4, complete sequence Length = 147777 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 124 tagtagtagtagtagtctt 142 ||||||||||||||||||| Sbjct: 95366 tagtagtagtagtagtctt 95384
>gb|AF332093.1|AF332093 White spot syndrome virus, complete genome Length = 305107 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 41004 cactagtagtagtagtagt 41022
>gb|AC154108.3| Mus musculus BAC clone RP23-74K24 from chromosome 7, complete sequence Length = 222515 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 124 tagtagtagtagtagtctt 142 ||||||||||||||||||| Sbjct: 23111 tagtagtagtagtagtctt 23093
>gb|AF280623.1|AF280623 Papilio canadensis cytochrome P450 6B22 (CYP6B22) gene, complete cds Length = 3696 Score = 38.2 bits (19), Expect = 7.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 115 catactcactagtagtagtagta 137 |||||||| |||||||||||||| Sbjct: 619 catactcaatagtagtagtagta 597
>ref|XM_627473.1| Cryptosporidium parvum Iowa II PP2C like protein phosphatase (cgd6_1010), partial mRNA Length = 2148 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 870 cactagtagtagtagtagt 888
>gb|AF334726.1| Arabidopsis thaliana clone C00132 (e) unknown protein (At1g01730) mRNA, complete cds Length = 675 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 469 cactagtagtagtagtagt 451
>emb|BX005223.19| Zebrafish DNA sequence from clone DKEY-53K12, complete sequence Length = 242587 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 129317 cactagtagtagtagtagt 129335
>gb|AC151989.4| Mus musculus BAC clone RP23-298C3 from chromosome 7, complete sequence Length = 217239 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 124 tagtagtagtagtagtctt 142 ||||||||||||||||||| Sbjct: 196359 tagtagtagtagtagtctt 196341
>gb|AC153138.3| Mus musculus BAC clone RP23-442K7 from chromosome 7, complete sequence Length = 206648 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 94737 cactagtagtagtagtagt 94719
>emb|BX470087.8| Zebrafish DNA sequence from clone CH211-202A10 in linkage group 3, complete sequence Length = 218404 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 29157 cactagtagtagtagtagt 29175 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 28959 cactagtagtagtagtagt 28977
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 33048961 cactagtagtagtagtagt 33048979
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 9221945 cactagtagtagtagtagt 9221963
>emb|BX815362.1|CNS0ABIP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS54ZG10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1153 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 123 ctagtagtagtagtagtct 141 ||||||||||||||||||| Sbjct: 1092 ctagtagtagtagtagtct 1110
>emb|BX815073.1|CNS0ABGA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS30ZB03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1287 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 123 ctagtagtagtagtagtct 141 ||||||||||||||||||| Sbjct: 1115 ctagtagtagtagtagtct 1133
>emb|BX818113.1|CNS0AB3D Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL61ZF07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 793 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 492 cactagtagtagtagtagt 474
>emb|BX819616.1|CNS0A9RG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB94ZG11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1430 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 119 ctcactagtagtagtagta 137 ||||||||||||||||||| Sbjct: 167 ctcactagtagtagtagta 149
>emb|BX819824.1|CNS0A854 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS32ZC01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1533 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 119 ctcactagtagtagtagta 137 ||||||||||||||||||| Sbjct: 213 ctcactagtagtagtagta 195
>gb|AC073178.9|AC073178 Arabidopsis thaliana chromosome 1 BAC F10D13 genomic sequence, complete sequence Length = 107214 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 123 ctagtagtagtagtagtct 141 ||||||||||||||||||| Sbjct: 86643 ctagtagtagtagtagtct 86661
>gb|AF369029.2| White spot syndrome virus, complete genome Length = 292967 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 89953 cactagtagtagtagtagt 89971
>gb|AY089105.1| Arabidopsis thaliana clone 3365 mRNA, complete sequence Length = 858 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 503 cactagtagtagtagtagt 485
>gb|AY087242.1| Arabidopsis thaliana clone 33192 mRNA, complete sequence Length = 1592 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 119 ctcactagtagtagtagta 137 ||||||||||||||||||| Sbjct: 227 ctcactagtagtagtagta 209
>gb|AC002328.2|AC002328 Genomic sequence for Arabidopsis thaliana BAC F20N2 from chromosome I, complete sequence Length = 109171 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 122 actagtagtagtagtagtc 140 ||||||||||||||||||| Sbjct: 56 actagtagtagtagtagtc 74
>gb|AC009273.2|T1N6 Sequence of BAC T1N6 from Arabidopsis thaliana chromosome 1, complete sequence Length = 76175 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 42842 cactagtagtagtagtagt 42824
>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0036E18 Length = 141148 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 33158 cactagtagtagtagtagt 33176
>emb|BX679669.6| Mouse DNA sequence from clone RP23-73K23 on chromosome 2, complete sequence Length = 18054 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 122 actagtagtagtagtagtc 140 ||||||||||||||||||| Sbjct: 5347 actagtagtagtagtagtc 5329
>emb|BX000534.11| Zebrafish DNA sequence from clone DKEY-26G8 in linkage group 12, complete sequence Length = 199670 Score = 38.2 bits (19), Expect = 7.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 124 tagtagtagtagtagtcttcttg 146 |||||||||||||||| |||||| Sbjct: 20519 tagtagtagtagtagtattcttg 20541
>gb|AC102462.19| Mus musculus chromosome 1, clone RP24-327F2, complete sequence Length = 141794 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 20587 cactagtagtagtagtagt 20569
>emb|Z48047.1|ATCNX2MR A.thaliana mRNA for molybdenum cofactor biosynthesis Cnx2 protein Length = 1623 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 119 ctcactagtagtagtagta 137 ||||||||||||||||||| Sbjct: 249 ctcactagtagtagtagta 231
>gb|AF440570.1| Shrimp white spot syndrome virus, complete genome Length = 307287 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 74587 cactagtagtagtagtagt 74605
>emb|AJ328347.1|HSA328347 Homo sapiens genomic sequence surrounding NotI site, clone NL4-CP21R Length = 709 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 106 acgtgcatacatactcact 124 ||||||||||||||||||| Sbjct: 180 acgtgcatacatactcact 198
>gb|AC154780.2| Mus musculus BAC clone RP24-462E4 from 13, complete sequence Length = 161998 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 124 tagtagtagtagtagtctt 142 ||||||||||||||||||| Sbjct: 117132 tagtagtagtagtagtctt 117150 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 124 tagtagtagtagtagtctt 142 ||||||||||||||||||| Sbjct: 117082 tagtagtagtagtagtctt 117100
>emb|BX640579.10| Zebrafish DNA sequence from clone CH211-266K5 in linkage group 19, complete sequence Length = 168768 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 90092 cactagtagtagtagtagt 90110
>emb|BX908394.9| Zebrafish DNA sequence from clone DKEY-106H23 in linkage group 18, complete sequence Length = 102817 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 124 tagtagtagtagtagtctt 142 ||||||||||||||||||| Sbjct: 28591 tagtagtagtagtagtctt 28609
>emb|BX294662.13| Zebrafish DNA sequence from clone DKEYP-117E6 in linkage group 20, complete sequence Length = 154558 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 122 actagtagtagtagtagtc 140 ||||||||||||||||||| Sbjct: 27504 actagtagtagtagtagtc 27486
>emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00 Length = 1457619 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 92 atggcaactcaagaacgtg 110 ||||||||||||||||||| Sbjct: 1012884 atggcaactcaagaacgtg 1012902
>gb|AC149387.2| Phakopsora pachyrhizi clone JGIAFNA-5B13, complete sequence Length = 21509 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 124 tagtagtagtagtagtctt 142 ||||||||||||||||||| Sbjct: 15851 tagtagtagtagtagtctt 15833
>emb|AL512544.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0609A12, complete sequence Length = 15463 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 3261 cactagtagtagtagtagt 3279
>gb|AC118684.9| Mus musculus chromosome 17, clone RP23-414B17, complete sequence Length = 202561 Score = 38.2 bits (19), Expect = 7.0 Identities = 28/31 (90%) Strand = Plus / Minus Query: 109 tgcatacatactcactagtagtagtagtagt 139 |||||||||| | | |||||||||||||||| Sbjct: 202009 tgcatacatatttagtagtagtagtagtagt 201979
>emb|BX544889.5| Mouse DNA sequence from clone RP23-216C16 on chromosome 4, complete sequence Length = 93737 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 80261 cactagtagtagtagtagt 80279
>gb|AC091106.17| Mus musculus chromosome 6, clone RP23-103L13, complete sequence Length = 192344 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 124 tagtagtagtagtagtctt 142 ||||||||||||||||||| Sbjct: 143459 tagtagtagtagtagtctt 143477
>emb|AL606635.3|OSJN00057 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010D21, complete sequence Length = 140626 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 58542 cactagtagtagtagtagt 58560
>gb|AC132258.3| Mus musculus BAC clone RP24-361F13 from 1, complete sequence Length = 130493 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 33145 cactagtagtagtagtagt 33127
>emb|CR352286.6| Zebrafish DNA sequence from clone CH211-93A20 in linkage group 19, complete sequence Length = 147941 Score = 38.2 bits (19), Expect = 7.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 124 tagtagtagtagtagtcttcttg 146 |||||||||||||||| |||||| Sbjct: 50746 tagtagtagtagtagtattcttg 50768
>gb|U66251.1|NPU66251 Neocallimastix patriciarum acetylxylan esterase (bnaI) mRNA, complete cds Length = 1541 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 124 tagtagtagtagtagtctt 142 ||||||||||||||||||| Sbjct: 973 tagtagtagtagtagtctt 955
>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence Length = 949626 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 124 tagtagtagtagtagtctt 142 ||||||||||||||||||| Sbjct: 144043 tagtagtagtagtagtctt 144061
>gb|AC150903.2| Mus musculus BAC clone RP23-35B12 from chromosome 7, complete sequence Length = 217178 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 209228 cactagtagtagtagtagt 209246
>dbj|AP006701.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT08P04, TM0587, complete sequence Length = 110885 Score = 38.2 bits (19), Expect = 7.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 117 tactcactagtagtagtagtagt 139 ||||| ||||||||||||||||| Sbjct: 71152 tactctctagtagtagtagtagt 71174
>dbj|AP004968.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT43O24, TM0145, complete sequence Length = 134976 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 90997 cactagtagtagtagtagt 90979
>gb|U07379.1|HVU07379 Hordeum vulgare clone nhvul015 5S rRNA genes, partial sequence Length = 301 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 213 cactagtagtagtagtagt 231
>emb|AL844903.11| Mouse DNA sequence from clone RP23-197C2 on chromosome 2, complete sequence Length = 123851 Score = 38.2 bits (19), Expect = 7.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 76 gatctcagatccatcaatggcaa 98 |||||||| |||||||||||||| Sbjct: 57797 gatctcagctccatcaatggcaa 57819
>emb|AL732541.11| Mouse DNA sequence from clone RP23-306D20 on chromosome 2, complete sequence Length = 213918 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 124 tagtagtagtagtagtctt 142 ||||||||||||||||||| Sbjct: 149950 tagtagtagtagtagtctt 149968
>emb|X87029.1|HSB7G3G04 H.sapiens B7-g3G04 gene for immunoglobulin heavy chain variable region Length = 321 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 117 cactagtagtagtagtagt 135
>dbj|AB022595.1| Cyanidium caldarium GsftsZ2 gene for plastid division protein FtsZ, complete cds Length = 1498 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 121 cactagtagtagtagtagt 139 ||||||||||||||||||| Sbjct: 325 cactagtagtagtagtagt 307
>emb|AL606988.16| Mouse DNA sequence from clone RP23-35A4 on chromosome 4, complete sequence Length = 160100 Score = 38.2 bits (19), Expect = 7.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 124 tagtagtagtagtagtcttcttg 146 |||||||||||||||| |||||| Sbjct: 98222 tagtagtagtagtagtattcttg 98244 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 898,619 Number of Sequences: 3902068 Number of extensions: 898619 Number of successful extensions: 143649 Number of sequences better than 10.0: 116 Number of HSP's better than 10.0 without gapping: 116 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 142127 Number of HSP's gapped (non-prelim): 1273 length of query: 146 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 125 effective length of database: 17,151,101,840 effective search space: 2143887730000 effective search space used: 2143887730000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)