Clone Information

BLAST Search Result

Clone Name	rbaet73a06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloropl...	123	1e-28
2	PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloropl...	120	1e-27
3	PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloropl...	120	1e-27
4	PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloropl...	116	1e-26
5	PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplas...	116	2e-26
6	PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chlor...	114	6e-26
7	PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloropl...	114	8e-26
8	PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chlor...	113	1e-25
9	PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloropl...	110	7e-25
10	PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloropl...	90	1e-18
11	PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloropl...	89	4e-18
12	PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloropl...	86	2e-17
13	PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypep...	74	9e-14
14	PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypep...	71	6e-13
15	PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypep...	71	6e-13
16	PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypep...	70	2e-12
17	PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypep...	69	3e-12
18	PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypep...	67	1e-11
19	CH10_ENTFA (Q93EU7) 10 kDa chaperonin (Protein Cpn10) (groES pro...	34	0.079
20	MECR_RAT (Q9Z311) Trans-2-enoyl-CoA reductase, mitochondrial pre...	30	1.5
21	LEPA_PHOLL (Q7N1X3) GTP-binding protein lepA	30	2.0
22	MECR_MOUSE (Q9DCS3) Trans-2-enoyl-CoA reductase, mitochondrial p...	29	2.5
23	BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)	29	2.5
24	ILVC_HELPJ (Q9ZMA9) Ketol-acid reductoisomerase (EC 1.1.1.86) (A...	29	3.3
25	MSH3_HUMAN (P20585) DNA mismatch repair protein Msh3 (Divergent ...	28	5.7
26	SDHD_BACHK (Q6HKG3) Probable D-serine dehydratase (EC 4.3.1.18) ...	28	5.7
27	SDHD_BACCZ (Q63D23) Probable D-serine dehydratase (EC 4.3.1.18) ...	28	5.7
28	DPOL_NPVAC (P18131) DNA polymerase (EC 2.7.7.7)	28	5.7
29	CH103_RHIME (Q930X9) 10 kDa chaperonin 3 (Protein Cpn10 3) (groE...	28	5.7
30	TIBA_ECOLI (Q9XD84) Adhesin/invasin tibA precursor (Glycoprotein...	28	7.4
31	MSH3_MOUSE (P13705) DNA mismatch repair protein Msh3 (Repair-3 p...	28	7.4
32	PI52A_CHICK (Q5F356) Phosphatidylinositol-4-phosphate 5-kinase t...	28	7.4
33	USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A p...	28	7.4
34	Y905_PICTO (Q6L0L2) UPF0215 protein PTO0905	28	7.4
35	LEPA_YERPS (Q667U9) GTP-binding protein lepA	28	7.4
36	LEPA_YERPE (Q8ZD74) GTP-binding protein lepA	28	7.4
37	PI52B_RAT (O88377) Phosphatidylinositol-4-phosphate 5-kinase typ...	28	7.4
38	PI52B_MOUSE (Q80XI4) Phosphatidylinositol-4-phosphate 5-kinase t...	28	7.4
39	PI52B_HUMAN (P78356) Phosphatidylinositol-4-phosphate 5-kinase t...	28	7.4
40	KCNKA_RAT (Q9JIS4) Potassium channel subfamily K member 10 (Outw...	28	7.4
41	FAT_DROME (P33450) Cadherin-related tumor suppressor precursor (...	27	9.7
42	DPOL_NPVBM (P41712) DNA polymerase (EC 2.7.7.7)	27	9.7
43	VCAP_SHV21 (Q00999) Major capsid protein (MCP)	27	9.7
44	EBNA6_EBV (P03204) Epstein-Barr nuclear antigen 6 (EBV nuclear a...	27	9.7
45	PK1L1_MOUSE (Q8R526) Polycystic kidney disease 1-like 1 protein ...	27	9.7
46	KCNKA_HUMAN (P57789) Potassium channel subfamily K member 10 (Ou...	27	9.7

>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 325

 Score =  123 bits (308), Expect = 1e-28
 Identities = 64/67 (95%), Positives = 65/67 (97%)
 Frame = -1

Query: 336 EELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVW 157
           EELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL  +APKDVKIQGVW
Sbjct: 261 EELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL--EAPKDVKIQGVW 318

Query: 156 YAQLESN 136
           YAQLESN
Sbjct: 319 YAQLESN 325

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>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 332

 Score =  120 bits (300), Expect = 1e-27
 Identities = 58/65 (89%), Positives = 61/65 (93%)
 Frame = -1

Query: 336 EELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVW 157
           EEL KENVKN SSSTG ITLSVT+SKPETGEVIGVFES+QPSDTDLGAK PKDVKIQG+W
Sbjct: 268 EELQKENVKNTSSSTGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIW 327

Query: 156 YAQLE 142
           YAQLE
Sbjct: 328 YAQLE 332

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>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score =  120 bits (300), Expect = 1e-27
 Identities = 57/65 (87%), Positives = 62/65 (95%)
 Frame = -1

Query: 336 EELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVW 157
           EEL KEN+K+ SSSTG ITLSVTKSKPETGEVIGVFES+QPSDTDLG+KAPKDVKIQG+W
Sbjct: 265 EELVKENIKDVSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGSKAPKDVKIQGIW 324

Query: 156 YAQLE 142
           YAQLE
Sbjct: 325 YAQLE 329

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>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score =  116 bits (291), Expect = 1e-26
 Identities = 56/65 (86%), Positives = 60/65 (92%)
 Frame = -1

Query: 336 EELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVW 157
           EEL KENVKN +S TG ITLSVT+SKPETGEVIGVFES+QPSDTDLGAK PKDVKIQG+W
Sbjct: 265 EELQKENVKNTASLTGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIW 324

Query: 156 YAQLE 142
           YAQLE
Sbjct: 325 YAQLE 329

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>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score =  116 bits (290), Expect = 2e-26
 Identities = 57/66 (86%), Positives = 62/66 (93%)
 Frame = -1

Query: 336 EELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVW 157
           EEL KEN K+A+SS G ITLSVT++KPETGEVIGVFES+QPSDTDLGAKAPKDVKIQGVW
Sbjct: 264 EELGKENNKSAASSKGKITLSVTQTKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVW 323

Query: 156 YAQLES 139
           YAQLES
Sbjct: 324 YAQLES 329

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>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast|
           precursor (OEE1) (33 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 33 kDa subunit) (33 kDa
           thylakoid membrane protein)
          Length = 332

 Score =  114 bits (285), Expect = 6e-26
 Identities = 55/65 (84%), Positives = 58/65 (89%)
 Frame = -1

Query: 336 EELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVW 157
           EEL KENVKN ++S G ITL VTKSKPETGEVIGVFES+QPSDTDLGAK PKDVKIQGVW
Sbjct: 268 EELVKENVKNTAASVGEITLKVTKSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVW 327

Query: 156 YAQLE 142
           Y QLE
Sbjct: 328 YGQLE 332

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>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 333

 Score =  114 bits (284), Expect = 8e-26
 Identities = 54/66 (81%), Positives = 59/66 (89%)
 Frame = -1

Query: 336 EELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVW 157
           EEL KENVKN +S TG IT +VTKS P+TGEVIGVFES+QPSDTDLGAK PKDVKIQG+W
Sbjct: 268 EELQKENVKNTASLTGKITFTVTKSNPQTGEVIGVFESIQPSDTDLGAKTPKDVKIQGIW 327

Query: 156 YAQLES 139
           YAQLES
Sbjct: 328 YAQLES 333

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>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast|
           precursor (OEE1) (33 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 33 kDa subunit) (33 kDa
           thylakoid membrane protein)
          Length = 331

 Score =  113 bits (283), Expect = 1e-25
 Identities = 53/65 (81%), Positives = 59/65 (90%)
 Frame = -1

Query: 336 EELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVW 157
           EEL+KENVKN ++S G ITL +TKSKPETGEVIGVFES+QPSDTDLGAK PKDVKIQGVW
Sbjct: 267 EELSKENVKNTAASVGEITLKITKSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVW 326

Query: 156 YAQLE 142
           Y Q+E
Sbjct: 327 YGQIE 331

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>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 332

 Score =  110 bits (276), Expect = 7e-25
 Identities = 54/65 (83%), Positives = 58/65 (89%)
 Frame = -1

Query: 336 EELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVW 157
           EEL KEN KN +SS G ITLSVT SKPETGEVIGVF+S+QPSDTDLGAK PKDVKI+GVW
Sbjct: 266 EELQKENNKNVASSKGTITLSVTSSKPETGEVIGVFQSLQPSDTDLGAKVPKDVKIEGVW 325

Query: 156 YAQLE 142
           YAQLE
Sbjct: 326 YAQLE 330

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>PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1)
          Length = 338

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 41/64 (64%), Positives = 48/64 (75%)
 Frame = -1

Query: 336 EELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVW 157
           EE AKEN K+ ++S G I   V K   ETGE+ GVFES+QPSDTDLGAK PKD+K  GVW
Sbjct: 271 EEYAKENSKSTAASVGTIAFKVAKVNAETGEIAGVFESIQPSDTDLGAKVPKDIKTSGVW 330

Query: 156 YAQL 145
           YAQ+
Sbjct: 331 YAQI 334

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>PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1)
          Length = 291

 Score = 88.6 bits (218), Expect = 4e-18
 Identities = 41/65 (63%), Positives = 49/65 (75%)
 Frame = -1

Query: 336 EELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVW 157
           EEL KENVK   +  G+   SV K  P TGE+ GVFES+QPSDTDLGAK PKD+K+ G+W
Sbjct: 227 EELLKENVKITKALKGSAVFSVAKVDPVTGEIAGVFESIQPSDTDLGAKPPKDIKVTGLW 286

Query: 156 YAQLE 142
           YAQL+
Sbjct: 287 YAQLK 291

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>PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1)
          Length = 293

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 40/64 (62%), Positives = 47/64 (73%)
 Frame = -1

Query: 336 EELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVW 157
           EEL KENVK+  +  G+   SV K    TGE+ GVFES+QPSDTDLGAK PKD+KI G+W
Sbjct: 228 EELLKENVKSTKALKGSAVFSVAKVNTATGEIAGVFESIQPSDTDLGAKPPKDIKITGLW 287

Query: 156 YAQL 145
           Y QL
Sbjct: 288 YGQL 291

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>PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 273

 Score = 73.9 bits (180), Expect = 9e-14
 Identities = 34/65 (52%), Positives = 46/65 (70%)
 Frame = -1

Query: 336 EELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVW 157
           E+L + NVK A    G I+L + K    +GE+ G FES QPSDTDLGA  PK+VKI+G++
Sbjct: 209 EDLTRTNVKRAEILNGKISLQIAKVDSSSGEIAGTFESEQPSDTDLGADEPKEVKIRGIF 268

Query: 156 YAQLE 142
           YA++E
Sbjct: 269 YARVE 273

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>PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 272

 Score = 71.2 bits (173), Expect = 6e-13
 Identities = 36/65 (55%), Positives = 45/65 (69%)
 Frame = -1

Query: 336 EELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVW 157
           EELA+ NVK  S + G I+L+V K    TGE+ G FES Q SD D+GA  P +VKIQGV+
Sbjct: 206 EELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVF 265

Query: 156 YAQLE 142
           YA +E
Sbjct: 266 YASIE 270

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>PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 272

 Score = 71.2 bits (173), Expect = 6e-13
 Identities = 36/65 (55%), Positives = 45/65 (69%)
 Frame = -1

Query: 336 EELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVW 157
           EELA+ NVK  S + G I+L+V K    TGE+ G FES Q SD D+GA  P +VKIQGV+
Sbjct: 206 EELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVF 265

Query: 156 YAQLE 142
           YA +E
Sbjct: 266 YASIE 270

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>PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 275

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 33/58 (56%), Positives = 43/58 (74%)
 Frame = -1

Query: 318 NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 145
           NVK      G+I+L VTK    TGE+ GVF+S QPSDTDLGAK P +VKI+G++YA++
Sbjct: 214 NVKQTPIGKGSISLQVTKVDQATGEIAGVFDSEQPSDTDLGAKEPVEVKIRGIFYARV 271

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>PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 277

 Score = 68.9 bits (167), Expect = 3e-12
 Identities = 33/65 (50%), Positives = 45/65 (69%)
 Frame = -1

Query: 336 EELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVW 157
           E+L KENVK   +  G I+L+V+K    TGEV GVF ++QPSDTD+G K   DVK+ G +
Sbjct: 209 EDLTKENVKRFVTGQGEISLAVSKVDGATGEVAGVFTAIQPSDTDMGGKEAVDVKLVGQF 268

Query: 156 YAQLE 142
           Y ++E
Sbjct: 269 YGRIE 273

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>PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 274

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 29/63 (46%), Positives = 44/63 (69%)
 Frame = -1

Query: 324 KENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 145
           + N K      G ++L VT+    TGE+ G+FES QPSDTDLGAK P DVK++G++Y ++
Sbjct: 211 RTNKKETPLGKGTLSLQVTQVDGSTGEIAGIFESEQPSDTDLGAKEPLDVKVRGIFYGRV 270

Query: 144 ESN 136
           +++
Sbjct: 271 DTD 273

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>CH10_ENTFA (Q93EU7) 10 kDa chaperonin (Protein Cpn10) (groES protein)|
          Length = 94

 Score = 34.3 bits (77), Expect = 0.079
 Identities = 23/54 (42%), Positives = 28/54 (51%)
 Frame = -1

Query: 330 LAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKI 169
           +AKE  K      G +  SV K KP+TGEVI V E       + G K P +VKI
Sbjct: 13  VAKEEEKTVG---GIVLASVAKEKPQTGEVIAVGEG---RVLENGTKVPMEVKI 60

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>MECR_RAT (Q9Z311) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC|
           1.3.1.38) (Nuclear receptor-binding factor 1) (NRBF-1)
          Length = 373

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 219 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVK--ILIFCACIR 88
           QP    +     KD+K++G W +Q + N S  E K  ILI C  IR
Sbjct: 291 QPVTASVSMLIFKDLKLRGFWLSQWKKNHSPDEFKELILILCNLIR 336

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>LEPA_PHOLL (Q7N1X3) GTP-binding protein lepA|
          Length = 598

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +2

Query: 95  HAQKMSIFTSAML*LDSSCAYHTPWILTSLGALAPRSVSDGCTLSKTPITSPVSGLLLVT 274
           +A ++ IFT   +  D        W++ ++  +    V D  TL++ P   P+ G   V 
Sbjct: 233 NADRLGIFTPKRVDRDVLGCGEVGWLVCAIKDILGAPVGDTLTLARQPAEKPLPGFKKVK 292

Query: 275 LRV---MLPVEEDAFFTF 319
            +V   + PV  D +  F
Sbjct: 293 PQVYAGLFPVSSDDYEAF 310

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>MECR_MOUSE (Q9DCS3) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC|
           1.3.1.38)
          Length = 373

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 219 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVKILIFCAC 94
           QP    +     KD+K++G W +Q + N S  E K LI   C
Sbjct: 291 QPVTASVSLLIFKDLKLRGFWLSQWKKNHSPDEFKELILTLC 332

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>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)|
          Length = 644

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 19/77 (24%), Positives = 36/77 (46%)
 Frame = +2

Query: 35  YTHKHIVASILSSPPTNPRMHAQKMSIFTSAML*LDSSCAYHTPWILTSLGALAPRSVSD 214
           Y H     S ++ PP  P +  Q+M+  TS+     ++     PW  +S  A+ P + S 
Sbjct: 474 YQHSTSAGSSVNPPPPPPPLFQQQMTTTTSSA----AASFVEQPWSSSSSRAIQPATTS- 528

Query: 215 GCTLSKTPITSPVSGLL 265
             + S +  +SP + ++
Sbjct: 529 ASSSSSSSASSPAAAVV 545

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>ILVC_HELPJ (Q9ZMA9) Ketol-acid reductoisomerase (EC 1.1.1.86)|
           (Acetohydroxy-acid isomeroreductase)
           (Alpha-keto-beta-hydroxylacil reductoisomerase)
          Length = 330

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = -1

Query: 282 TLSVTKSKPETGEVIGVFESVQPSD 208
           +LSV+K+K E  EV+GV E VQ SD
Sbjct: 52  SLSVSKAKKEGFEVLGVKELVQQSD 76

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>MSH3_HUMAN (P20585) DNA mismatch repair protein Msh3 (Divergent upstream|
           protein) (DUP) (Mismatch repair protein 1) (MRP1)
          Length = 1137

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -1

Query: 324 KENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPS 211
           KENV++     GNI + +   +P TGEV  VF+S Q S
Sbjct: 375 KENVRDKKK--GNIFIGIVGVQPATGEV--VFDSFQDS 408

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>SDHD_BACHK (Q6HKG3) Probable D-serine dehydratase (EC 4.3.1.18) (D-serine|
           deaminase) (DSD)
          Length = 446

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 330 LAKENVKNASSSTGNITLSVTKSKPETGEVIGVFES 223
           L++ENVK+A          + K  PET E  G+ ES
Sbjct: 42  LSEENVKDAEERLKRFASYIAKVFPETKETKGIIES 77

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>SDHD_BACCZ (Q63D23) Probable D-serine dehydratase (EC 4.3.1.18) (D-serine|
           deaminase) (DSD)
          Length = 446

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 330 LAKENVKNASSSTGNITLSVTKSKPETGEVIGVFES 223
           L++ENVK+A          + K  PET E  G+ ES
Sbjct: 42  LSEENVKDAEERLKRFASYIAKVFPETKETKGIIES 77

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>DPOL_NPVAC (P18131) DNA polymerase (EC 2.7.7.7)|
          Length = 984

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 37  HTQTHCCLDSFLSTDQPTYACTKDEYLHFCYALVRLELRVPHTLDLD 177
           H  +   +D  +S     Y    DEY  FC+   +L  ++P T D D
Sbjct: 204 HNMSKASVDCIMSIGFVVYK--NDEYAKFCFMYHKLPTQIPETYDDD 248

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>CH103_RHIME (Q930X9) 10 kDa chaperonin 3 (Protein Cpn10 3) (groES protein 3)|
          Length = 105

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 19/47 (40%), Positives = 21/47 (44%)
 Frame = -1

Query: 309 NASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKI 169
           N  S  G I     K KP+ GEVI V      S  + G   P DVKI
Sbjct: 18  NTQSKGGIIIPDTAKEKPQEGEVIAVGPG---SRDESGKLIPLDVKI 61

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>TIBA_ECOLI (Q9XD84) Adhesin/invasin tibA precursor (Glycoprotein tibA)|
          Length = 989

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 255 ETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWY 154
           E G  + VF+  Q SDT +G+    DV+  GV Y
Sbjct: 347 ENGGYLTVFDGHQASDTMVGSDGTLDVRSGGVLY 380

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>MSH3_MOUSE (P13705) DNA mismatch repair protein Msh3 (Repair-3 protein)|
           (REP-1)
          Length = 1091

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -1

Query: 324 KENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL 199
           KEN+K+     GN+++ V   +P TGEV  VF+  Q S + L
Sbjct: 333 KENIKDKKK--GNLSVGVVGVQPATGEV--VFDCFQDSASRL 370

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>PI52A_CHICK (Q5F356) Phosphatidylinositol-4-phosphate 5-kinase type-2 alpha (EC|
           2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase
           type II alpha) (1-phosphatidylinositol-4-phosphate
           5-kinase 2-alpha) (PtdIns(4)P-5-kinase isoform 2-alpha)
           (PIP5KII-alpha
          Length = 405

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 24  FILDTHTNTLLPRFFPLHRPT 86
           FI++ H NTLLP+F  ++R T
Sbjct: 164 FIVECHGNTLLPQFLGMYRLT 184

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>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)|
            (Usher syndrome type IIa protein homolog)
          Length = 5193

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 46   THCCLDSFLSTDQPTYACTKDEYL 117
            T  C D  L   QP Y+C +D+Y+
Sbjct: 3180 TKVCCDGLLYDPQPGYSCCEDKYI 3203

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>Y905_PICTO (Q6L0L2) UPF0215 protein PTO0905|
          Length = 186

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -1

Query: 318 NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKA 187
           ++KN + +TG   +S+T+ +P    +I       P   D   KA
Sbjct: 84  DIKNINEATGVPVISITRREPNIQRIISAVSRYFPEKVDRALKA 127

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>LEPA_YERPS (Q667U9) GTP-binding protein lepA|
          Length = 599

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
 Frame = +2

Query: 80  TNPRMHAQKMSIFTSAML*LDSSCAYHTPWILTSLGALAPRSVSDGCTLSKTPITSPVSG 259
           T    +A ++ IFT   +  D        W++ ++  +    V D  TL++ P    + G
Sbjct: 228 TGQSYNADRLGIFTPKRVDRDVLNCGEVGWLVCAIKDILGAPVGDTLTLTRNPAEKSLPG 287

Query: 260 LLLVTLRV---MLPVEEDAFFTF 319
              V  +V   + P+  D + +F
Sbjct: 288 FKKVKPQVYAGLFPISSDDYESF 310

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>LEPA_YERPE (Q8ZD74) GTP-binding protein lepA|
          Length = 599

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
 Frame = +2

Query: 80  TNPRMHAQKMSIFTSAML*LDSSCAYHTPWILTSLGALAPRSVSDGCTLSKTPITSPVSG 259
           T    +A ++ IFT   +  D        W++ ++  +    V D  TL++ P    + G
Sbjct: 228 TGQSYNADRLGIFTPKRVDRDVLNCGEVGWLVCAIKDILGAPVGDTLTLTRNPAEKSLPG 287

Query: 260 LLLVTLRV---MLPVEEDAFFTF 319
              V  +V   + P+  D + +F
Sbjct: 288 FKKVKPQVYAGLFPISSDDYESF 310

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>PI52B_RAT (O88377) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC|
           2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase
           type II beta) (1-phosphatidylinositol-4-phosphate
           5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta)
           (PIP5KII-beta) (Diph
          Length = 416

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 24  FILDTHTNTLLPRFFPLHRPT 86
           FI++ H NTLLP+F  ++R T
Sbjct: 170 FIVECHGNTLLPQFLGMYRLT 190

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>PI52B_MOUSE (Q80XI4) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC|
           2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase
           type II beta) (1-phosphatidylinositol-4-phosphate
           5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta)
           (PIP5KII-beta) (Di
          Length = 416

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 24  FILDTHTNTLLPRFFPLHRPT 86
           FI++ H NTLLP+F  ++R T
Sbjct: 170 FIVECHGNTLLPQFLGMYRLT 190

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>PI52B_HUMAN (P78356) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC|
           2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase
           type II beta) (1-phosphatidylinositol-4-phosphate
           5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta)
           (PIP5KII-beta) (Di
          Length = 416

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 24  FILDTHTNTLLPRFFPLHRPT 86
           FI++ H NTLLP+F  ++R T
Sbjct: 170 FIVECHGNTLLPQFLGMYRLT 190

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>KCNKA_RAT (Q9JIS4) Potassium channel subfamily K member 10 (Outward|
           rectifying potassium channel protein TREK-2) (TREK-2
           K(+) channel subunit)
          Length = 538

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 67  FLSTDQPTYACTKDEYL--HFCYALVRLELRVPHTLDLDILG 186
           F S+ + T A  K E+L  H C +   LE  + H LD D  G
Sbjct: 97  FESSQKNTIALEKAEFLRDHICVSPQELETLIQHALDADNAG 138

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>FAT_DROME (P33450) Cadherin-related tumor suppressor precursor (Protein fat)|
          Length = 5147

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
 Frame = -1

Query: 312  KNASSSTGNITLSVTKSKPETGE----VIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 145
            K  S     IT+      P T       + +F    PS+  L    P D+ I G +  +L
Sbjct: 3736 KQKSQHLLTITVLDQNDNPSTTRSLHIAVSLFNGDLPSNVKLADVRPNDIDIVGDYRCRL 3795

Query: 144  ESN*SIAEVKILIFCAC 94
            + N + +++++ I  AC
Sbjct: 3796 QKNPAQSQLQLAIPRAC 3812

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>DPOL_NPVBM (P41712) DNA polymerase (EC 2.7.7.7)|
          Length = 986

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +1

Query: 37  HTQTHCCLDSFLSTDQPTYACTKDEYLHFCYALVRLELRVPHTLDLD 177
           H  +   +D  +S     Y    DEY  FC+   +L   +P T D D
Sbjct: 204 HNMSKASVDCIMSIGFVVYK--NDEYARFCFMYHKLPTEIPETHDDD 248

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>VCAP_SHV21 (Q00999) Major capsid protein (MCP)|
          Length = 1371

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 21/84 (25%), Positives = 35/84 (41%)
 Frame = +2

Query: 35  YTHKHIVASILSSPPTNPRMHAQKMSIFTSAML*LDSSCAYHTPWILTSLGALAPRSVSD 214
           YT + +  ++ S   +  + H    S F      L  S  Y    +   +GA+   +V  
Sbjct: 198 YTERGLKKNVKSDLISMFKTHLVNNSFFLDKSEHLPHSRQYVLGILTEMIGAVCKETVFK 257

Query: 215 GCTLSKTPITSPVSGLLLVTLRVM 286
           G +   T    P+SG+L  T +VM
Sbjct: 258 GISTYSTANGQPISGVLETTDKVM 281

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>EBNA6_EBV (P03204) Epstein-Barr nuclear antigen 6 (EBV nuclear antigen 6)|
           (EBNA-6) (EBNA-3C) (EBNA-4B)
          Length = 992

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 153 RTTHPGS*HPWAPW 194
           R+ HP   HPWAPW
Sbjct: 799 RSQHPCYRHPWAPW 812

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>PK1L1_MOUSE (Q8R526) Polycystic kidney disease 1-like 1 protein|
           (Polycystin-1L1) (Fragment)
          Length = 531

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +2

Query: 23  FYTRYTHK----HIVASILSSPPTNPRMHAQKMSI 115
           FY+++T      HI  S+ S PP+   +H Q++++
Sbjct: 199 FYSKFTEYLEDFHIWLSLYSQPPSRSYLHTQRLAV 233

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>KCNKA_HUMAN (P57789) Potassium channel subfamily K member 10 (Outward|
           rectifying potassium channel protein TREK-2) (TREK-2
           K(+) channel subunit)
          Length = 538

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 67  FLSTDQPTYACTKDEYL--HFCYALVRLELRVPHTLDLDILG 186
           F S+ + T A  K E+L  H C +   LE  + H LD D  G
Sbjct: 97  FESSQKNTIALEKAEFLRDHVCVSPQELETLIQHALDADNAG 138


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,629,754
Number of Sequences: 219361
Number of extensions: 748377
Number of successful extensions: 2831
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 2778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2829
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result