>STE12_KLULA (Q08400) Protein STE12|
          Length = 666

 Score = 36.2 bits (82), Expect = 0.019
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +2

Query: 104 HMYTNVLHLPSTACATVSQIISALSTQIGSEDCEEDVRSYNAFLCPTNFRATPKMRAF-V 280
           +M+ N+L +  +    V+ ++     Q  S D   DV S    + P+N+R+TPK   F +
Sbjct: 508 YMFCNMLAVDPSLNMGVNPVVDPFYGQNHSMDVAHDVYSPQEVVYPSNYRSTPKAAYFNM 567

Query: 281 RSPWSSVHAKATAPPSTRN 337
           RSP    + +   PPS  N
Sbjct: 568 RSP----YGRNFPPPSAMN 582

>ZN434_HUMAN (Q9NX65) Zinc finger protein 434|
          Length = 485

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 6/104 (5%)
 Frame = -1

Query: 370 RRETCEKPYGEVPCARRGRGLGVYTGPRAPDKGSHLWRCAEVCGAEERIVGSDIFLTIL* 191
           R  T EKPY  + C +R      ++  R    G   ++CA VCG   +I  +    +   
Sbjct: 385 RTHTGEKPYQCIVCGKRFNNSSQFSAHRRIHTGESPYKCA-VCG---KIFNNSSHFS--- 437

Query: 190 ANLRGESGDDLANCSTCR*RQMKDIG------VHMLPAVDEREG 77
           A+ +  +G+    CS C     K+        VHM   +  +EG
Sbjct: 438 AHRKTHTGEKPYRCSHCERGFTKNSALTRHQTVHMKAVLSSQEG 481

>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)|
          Length = 3925

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
 Frame = +3

Query: 114  PMSFICRQRHVLQLARSSPLSP--RKLAQRIVRKMSDPTMRSSAPQTSAQRQR*EP-LSG 284
            P     RQ    Q  +   L P  + L Q  +++ S PT R SAP  S    + +P  S 
Sbjct: 3767 PSGAASRQPQTQQQQQGLGLQPPQQALTQARLQQQSQPTTRGSAPAASQPAGKPQPGPST 3826

Query: 285  ALGPVYTPRPRPRRAQGT 338
            A GP     PR  +  G+
Sbjct: 3827 ATGPQPAGPPRAEQTNGS 3844

>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +3

Query: 189  AQRIVRKMSDPTMRSSAPQTSAQRQR*EPLSGALGPVYTPRPRPRRAQGTSPYGFSQVSL 368
            +Q  +++ S PT RS+AP  S    + +P     GP   P P+P         G S+ + 
Sbjct: 3808 SQARLQQQSQPTTRSTAPAASHPAGKPQP-----GPTTAPGPQPAGLPRAEQAGSSKPAA 3862

Query: 369  RLP 377
            + P
Sbjct: 3863 KAP 3865

>Y1R1_DROME (P16424) Hypothetical 50 kDa protein in type I retrotransposable|
           element R1DM (ORF 1)
          Length = 471

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 223 QCVPLPHKLPRNAKDESLCQEPLVQCTRQGHGPAEHKEP 339
           +CV   HK+    + ES+C+    QC +QGH  A+ + P
Sbjct: 401 RCVGFDHKVSECRQKESVCR----QCGQQGHTAAKCQNP 435

>DPO3_MYCGE (P47277) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)|
          Length = 1451

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 15/58 (25%)
 Frame = -1

Query: 133 RQMKDIGVHMLPAVDEREGGNRVKRCNLHL---------------EKGFQAIYEFLSL 5
           +Q+K++G++ L  +D+    N  K+C + L               ++GFQ +YE LS+
Sbjct: 580 KQLKEMGINTLTEIDQ----NLNKKCQIDLMKRVFTNTAIVYVKNQRGFQNLYEMLSI 633

>TBA2_ANEPH (P33624) Tubulin alpha-2 chain (Fragment)|
          Length = 364

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 59  SFYSVASLSLIDCRQHMYTNVLHLPSTACATVSQIISALSTQIGSEDC-EEDVRSYNAFL 235
           + Y +   SL+D  +  YTN+  L       VSQIIS+L+T +  +     DV  +   L
Sbjct: 123 AIYDICRRSLLDIERPTYTNLNRL-------VSQIISSLTTSLRFDGALNVDVTEFQTNL 175

Query: 236 CP 241
            P
Sbjct: 176 VP 177

>LSHR_HUMAN (P22888) Lutropin-choriogonadotropic hormone receptor precursor|
           (LH/CG-R) (LSH-R) (Luteinizing hormone receptor) (LHR)
          Length = 699

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = +2

Query: 23  YSLESLFQM*ITSFYSVASLSLIDCRQHMYTNVLHLPSTACA-----TVSQIISALSTQI 187
           Y LES+ ++  TS YS+  L   +   ++    L  PS  CA     T  Q  S   ++ 
Sbjct: 240 YGLESIQRLIATSSYSLKKLPSRETFVNLLEATLTYPSHCCAFRNLPTKEQNFSHSISEN 299

Query: 188 GSEDCEEDVR 217
            S+ CE  VR
Sbjct: 300 FSKQCESTVR 309

>PHF1_HUMAN (O43189) PHD finger protein 1 (PHF1 protein)|
          Length = 567

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = +3

Query: 159 RSSPLSPRKLAQRIVRKMSDPTMRSSAPQTSAQRQR*EPLSGALGPVYTPRPRPRRA-QG 335
           R  P   R+  +  V ++  P+   + P+   QR+R          V  P P P ++ QG
Sbjct: 370 RPEPEPLRRRQKGKVEELGPPSAVRNQPEPQEQRERAHLQRALQASVSPPSPSPNQSYQG 429

Query: 336 TSPYGFSQVSLR 371
           +S Y F     R
Sbjct: 430 SSGYNFRPTDAR 441

>GCSH_MESCR (P93255) Glycine cleavage system H protein, mitochondrial precursor|
          Length = 163

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 73  CLPLSHRLPAAYVHQCPSSAVNGMCYS 153
           C P SH LPA  + +C S+ ++G+ Y+
Sbjct: 18  CAPKSHLLPALSLSRCFSTVLDGLKYA 44

>CHLD_SYNP7 (O07345) Magnesium-chelatase subunit chlD (EC 6.6.1.1)|
           (Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit
           D)
          Length = 677

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 168 PLSPRKLAQRIVRKMSDPTMRSSAPQTSAQRQR 266
           P+ PR   +RI     D T+R+SAP   A+RQR
Sbjct: 427 PMLPRGPVRRIA---VDATLRASAPYQKARRQR 456

>IC1_MOUSE (P97290) Plasma protease C1 inhibitor precursor (C1 Inh) (C1Inh)|
          Length = 504

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 247 LPRNAKDESLCQEPLVQCTRQGHGPAEHK 333
           LP  A  E  C EPL QC+      +E K
Sbjct: 118 LPTQATTEPFCPEPLAQCSDSDRDSSEAK 146


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,159,984
Number of Sequences: 219361
Number of extensions: 1394966
Number of successful extensions: 4202
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4198
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)