ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet72h04 |
|---|---|
| Clone Library Name | barley_pub |
>DYHC_FUSSO (P78716) Dynein heavy chain, cytosolic (DYHC)| Length = 4349 Score = 33.5 bits (75), Expect = 0.26 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%) Frame = -3 Query: 350 DAFHQI-LNGLARKLPHPETVYLQPGEKHLNWTSG--PVGDL 234 D FHQ+ L+G+ K P+P T YL ++ L W PV DL Sbjct: 3541 DWFHQLHLSGIQYKSPNPVTEYLSTADERLGWQENALPVDDL 3582
>FABH2_VIBVY (Q7M7I3) 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 (EC| 2.3.1.41) (3-oxoacyl-[acyl-carrier-protein] synthase III protein 2) (Beta-ketoacyl-ACP synthase III 2) (KAS III 2) Length = 362 Score = 33.1 bits (74), Expect = 0.34 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +2 Query: 311 ACEQGHLESDGMHLLVALAAGTTWPSSLMGW 403 A EQGH+++ LL A AG TW + L+ W Sbjct: 294 AVEQGHIKAGDNILLAAFGAGLTWGAGLVKW 324
>FABH2_VIBVU (Q8D719) 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 (EC| 2.3.1.41) (3-oxoacyl-[acyl-carrier-protein] synthase III protein 2) (Beta-ketoacyl-ACP synthase III 2) (KAS III 2) Length = 362 Score = 33.1 bits (74), Expect = 0.34 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +2 Query: 311 ACEQGHLESDGMHLLVALAAGTTWPSSLMGW 403 A EQGH+++ LL A AG TW + L+ W Sbjct: 294 AVEQGHIKAGDNILLAAFGAGLTWGAGLVKW 324
>HEM1_DESVH (Q72C23) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)| Length = 440 Score = 31.2 bits (69), Expect = 1.3 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Frame = -3 Query: 437 IDDILRKQRLLANPSMKKAM--LFPQPAQPRDAFHQILNGLARKLPHPETVYLQPGEKHL 264 I D++R+ +A + + + L P + RDA +L+ + RKL H +L+ +H Sbjct: 345 IVDLIRRSERIAQDELARTLKRLGPVDDETRDALEAMLSSMVRKLNHEPITFLK--RRHS 402 Query: 263 NWTSGP 246 +GP Sbjct: 403 EEDAGP 408
>SERA_THASE (Q9S1H0) Selenate reductase alpha subunit precursor (EC 1.97.1.9)| (Selenate reductase molybdenum subunit) Length = 918 Score = 30.0 bits (66), Expect = 2.9 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = +3 Query: 60 YVRSTIFSRVTPELITHLNIV*FYGSPNFSEKGNKRNRTFHK 185 Y T ++ V ELI L +V YG F+ G NR FH+ Sbjct: 869 YKNMTHYNSVNAELINPLELVGGYGHVKFAAGGFNPNRIFHE 910
>DHX9_CAEEL (Q22307) Probable ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear| DNA helicase II) (NDH II) Length = 1301 Score = 30.0 bits (66), Expect = 2.9 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 8/56 (14%) Frame = -3 Query: 455 ILTSIPIDDILRKQRLLANP--------SMKKAMLFPQPAQPRDAFHQILNGLARK 312 +L +PI+ ++ K +L + AM FP P PR+ H L+G RK Sbjct: 863 MLARMPIEPVIAKVLILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRK 918
>ADML_CANFA (O77559) ADM precursor [Contains: Adrenomedullin (AM);| Proadrenomedullin N-20 terminal peptide (ProAM-N20) (ProAM N-terminal 20 peptide) (PAMP)] Length = 188 Score = 29.6 bits (65), Expect = 3.8 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = -3 Query: 422 RKQRLLANPSMKKAMLFPQP---AQPRDAFHQILNGLAR 315 R++R L P +++ +LFP+P P HQ+L L + Sbjct: 149 RRRRSLPEPGLRRTLLFPEPRPGGAPAPRAHQVLANLLK 187
>AMIA2_MYCTU (P63490) Putative amidase amiA2 (EC 3.5.1.4)| Length = 484 Score = 29.6 bits (65), Expect = 3.8 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +2 Query: 329 LESDGMHLLVALAAGTTWPSSLMGWRAIFASSGYHQSG 442 L S G + A +TWP +L+GW +I +G+ G Sbjct: 406 LGSFGTDRAIIAACPSTWPWNLLGWPSINVPAGFTSDG 443
>AMIA2_MYCBO (P63491) Putative amidase amiA2 (EC 3.5.1.4)| Length = 484 Score = 29.6 bits (65), Expect = 3.8 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +2 Query: 329 LESDGMHLLVALAAGTTWPSSLMGWRAIFASSGYHQSG 442 L S G + A +TWP +L+GW +I +G+ G Sbjct: 406 LGSFGTDRAIIAACPSTWPWNLLGWPSINVPAGFTSDG 443
>VSR_NEIMA (Q9JWD6) Putative very-short-patch-repair endonuclease (EC 3.1.-.-)| Length = 140 Score = 29.3 bits (64), Expect = 4.9 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%) Frame = +1 Query: 133 DLRTSQRKAIKETELFTRSTKPG-LVRKLLCYQGFR 237 D+ T+ +++ ++ ++ TKP LVRK L +QGFR Sbjct: 3 DIFTTSKRSFVMLKIHSKETKPEVLVRKFLFFQGFR 38
>TBG1_RAT (P83888) Tubulin gamma-1 chain (Gamma-1 tubulin) (Gamma-tubulin| complex component 1) (GCP-1) Length = 451 Score = 28.9 bits (63), Expect = 6.4 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Frame = -3 Query: 359 QPRDAFHQILNGLARKLPHPETVYLQP--GEKHLNWTSG 249 +PR H ILN KL +PE +YL G NW SG Sbjct: 70 EPR-VIHSILNSSYAKLYNPENIYLSEHGGGAGNNWASG 107
>TBG1_MOUSE (P83887) Tubulin gamma-1 chain (Gamma-1 tubulin) (Gamma-tubulin| complex component 1) (GCP-1) Length = 451 Score = 28.9 bits (63), Expect = 6.4 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Frame = -3 Query: 359 QPRDAFHQILNGLARKLPHPETVYLQP--GEKHLNWTSG 249 +PR H ILN KL +PE +YL G NW SG Sbjct: 70 EPR-VIHSILNSSYAKLYNPENIYLSEHGGGAGNNWASG 107
>O10J5_HUMAN (Q8NHC4) Olfactory receptor 10J5| Length = 309 Score = 28.5 bits (62), Expect = 8.4 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = +1 Query: 343 NASLGCAGCGNNMAFFIDGLASNLCFLRISSIGID 447 N + AGC M FF+ LA+N CFL ++++G D Sbjct: 89 NQPISLAGCATQMFFFVI-LATNNCFL-LTAMGYD 121
>FABH_CLOTE (Q899P3) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase III) (Beta-ketoacyl-ACP synthase III) (KAS III) Length = 334 Score = 28.5 bits (62), Expect = 8.4 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +2 Query: 281 AVSIRSLGAGACEQGHLESDGMHLLVALAAGTTWPSSLMGW 403 A SI A E+G L+ +LV AG TW +SL+ W Sbjct: 293 AASIPIALAEVDEKGLLKKGDNVILVGFGAGLTWAASLIKW 333
>TBG2_HUMAN (Q9NRH3) Tubulin gamma-2 chain (Gamma-2 tubulin)| Length = 451 Score = 28.5 bits (62), Expect = 8.4 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Frame = -3 Query: 359 QPRDAFHQILNGLARKLPHPETVYLQP--GEKHLNWTSG 249 +PR H ILN KL +PE +YL G NW SG Sbjct: 70 EPR-VIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG 107
>TBG1_HUMAN (P23258) Tubulin gamma-1 chain (Gamma-1 tubulin) (Gamma-tubulin| complex component 1) (GCP-1) Length = 451 Score = 28.5 bits (62), Expect = 8.4 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Frame = -3 Query: 359 QPRDAFHQILNGLARKLPHPETVYLQP--GEKHLNWTSG 249 +PR H ILN KL +PE +YL G NW SG Sbjct: 70 EPR-VIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG 107
>TBG1_CANFA (Q9GKK5) Tubulin gamma-1 chain (Gamma-1 tubulin) (Gamma-tubulin| complex component 1) (GCP-1) Length = 451 Score = 28.5 bits (62), Expect = 8.4 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Frame = -3 Query: 359 QPRDAFHQILNGLARKLPHPETVYLQP--GEKHLNWTSG 249 +PR H ILN KL +PE +YL G NW SG Sbjct: 70 EPR-VIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG 107
>FABH2_VIBPA (Q87HJ2) 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 (EC| 2.3.1.41) (3-oxoacyl-[acyl-carrier-protein] synthase III protein 2) (Beta-ketoacyl-ACP synthase III 2) (KAS III 2) Length = 364 Score = 28.5 bits (62), Expect = 8.4 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +2 Query: 311 ACEQGHLESDGMHLLVALAAGTTWPSSLMGW 403 A EQG + LL A AG TW ++++ W Sbjct: 294 AVEQGRVNPGDNMLLAAFGAGLTWGAAVLKW 324 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,664,157 Number of Sequences: 219361 Number of extensions: 1335192 Number of successful extensions: 3552 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3483 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3552 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
