| Clone Name | rbaet72h04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 242 bits (122), Expect = 8e-61 Identities = 215/246 (87%) Strand = Plus / Plus Query: 212 agcttttatgttaccaaggcttcagatctccaacaggcccagatgtccagttgagatgct 271 ||||||| | || |||||| ||||||||| | |||||||| | |||||||||||||||| Sbjct: 18992510 agcttttctatttccaaggtttcagatctgctacaggccccgcagtccagttgagatgct 18992569 Query: 272 tctcacctggctgtaagtatacggtctctgggtgcgggagcttgcgagcaaggccattta 331 |||| ||||||| ||||||||| | |||||||| |||||||| ||||||||||| || | Sbjct: 18992570 tctcgcctggctttaagtatacactgtctgggtgtgggagcttccgagcaaggccgttga 18992629 Query: 332 gaatctgatggaatgcatctcttggttgcgctggctgcgggaacaacatggccttcttca 391 | |||||||||||||||||||| ||||| ||||||||||| ||||||||||||| |||| Sbjct: 18992630 ggatctgatggaatgcatctctaggttgtgctggctgcggaaacaacatggcctgtttca 18992689 Query: 392 ttgatgggttggcgagcaatctttgcttcctcaggatatcatcaatcgggatagacgtga 451 ||||||| |||||||| |||||||||||||| |||||||||||||| ||||| || |||| Sbjct: 18992690 ttgatggattggcgagtaatctttgcttccttaggatatcatcaattgggatggatgtga 18992749 Query: 452 gaattg 457 | |||| Sbjct: 18992750 ggattg 18992755
>dbj|AP005842.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0003H22 Length = 68256 Score = 242 bits (122), Expect = 8e-61 Identities = 215/246 (87%) Strand = Plus / Plus Query: 212 agcttttatgttaccaaggcttcagatctccaacaggcccagatgtccagttgagatgct 271 ||||||| | || |||||| ||||||||| | |||||||| | |||||||||||||||| Sbjct: 47831 agcttttctatttccaaggtttcagatctgctacaggccccgcagtccagttgagatgct 47890 Query: 272 tctcacctggctgtaagtatacggtctctgggtgcgggagcttgcgagcaaggccattta 331 |||| ||||||| ||||||||| | |||||||| |||||||| ||||||||||| || | Sbjct: 47891 tctcgcctggctttaagtatacactgtctgggtgtgggagcttccgagcaaggccgttga 47950 Query: 332 gaatctgatggaatgcatctcttggttgcgctggctgcgggaacaacatggccttcttca 391 | |||||||||||||||||||| ||||| ||||||||||| ||||||||||||| |||| Sbjct: 47951 ggatctgatggaatgcatctctaggttgtgctggctgcggaaacaacatggcctgtttca 48010 Query: 392 ttgatgggttggcgagcaatctttgcttcctcaggatatcatcaatcgggatagacgtga 451 ||||||| |||||||| |||||||||||||| |||||||||||||| ||||| || |||| Sbjct: 48011 ttgatggattggcgagtaatctttgcttccttaggatatcatcaattgggatggatgtga 48070 Query: 452 gaattg 457 | |||| Sbjct: 48071 ggattg 48076
>ref|XM_466000.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1305 Score = 240 bits (121), Expect = 3e-60 Identities = 205/233 (87%) Strand = Plus / Minus Query: 225 ccaaggcttcagatctccaacaggcccagatgtccagttgagatgcttctcacctggctg 284 |||||| ||||||||| | |||||||| | |||||||||||||||||||| ||||||| Sbjct: 1299 ccaaggtttcagatctgctacaggccccgcagtccagttgagatgcttctcgcctggctt 1240 Query: 285 taagtatacggtctctgggtgcgggagcttgcgagcaaggccatttagaatctgatggaa 344 ||||||||| | |||||||| |||||||| ||||||||||| || || ||||||||||| Sbjct: 1239 taagtatacactgtctgggtgtgggagcttccgagcaaggccgttgaggatctgatggaa 1180 Query: 345 tgcatctcttggttgcgctggctgcgggaacaacatggccttcttcattgatgggttggc 404 ||||||||| ||||| ||||||||||| ||||||||||||| ||||||||||| ||||| Sbjct: 1179 tgcatctctaggttgtgctggctgcggaaacaacatggcctgtttcattgatggattggc 1120 Query: 405 gagcaatctttgcttcctcaggatatcatcaatcgggatagacgtgagaattg 457 ||| |||||||||||||| |||||||||||||| ||||| || ||||| |||| Sbjct: 1119 gagtaatctttgcttccttaggatatcatcaattgggatggatgtgaggattg 1067
>ref|XM_472344.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1263 Score = 161 bits (81), Expect = 2e-36 Identities = 168/197 (85%) Strand = Plus / Minus Query: 223 taccaaggcttcagatctccaacaggcccagatgtccagttgagatgcttctcacctggc 282 ||||||| ||||||||||||||||| |||| ||||||||||| |||| |||| || Sbjct: 1262 taccaagctttcagatctccaacaggtccagcagtccagttgaggcgcttgtcactgggt 1203 Query: 283 tgtaagtatacggtctctgggtgcgggagcttgcgagcaaggccatttagaatctgatgg 342 || |||||||| ||||||||| || |||||||||||||||||||| | ||||| ||| Sbjct: 1202 tgcaagtatactccctctgggtgtggaagcttgcgagcaaggccattcaagatctggtgg 1143 Query: 343 aatgcatctcttggttgcgctggctgcgggaacaacatggccttcttcattgatgggttg 402 || |||||||||||||| |||||||| || ||||||||||||| |||||||||||| || Sbjct: 1142 aacgcatctcttggttgggctggctgtggaaacaacatggcctgcttcattgatggattt 1083 Query: 403 gcgagcaatctttgctt 419 || |||||||||||||| Sbjct: 1082 gcaagcaatctttgctt 1066
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 161 bits (81), Expect = 2e-36 Identities = 168/197 (85%) Strand = Plus / Minus Query: 223 taccaaggcttcagatctccaacaggcccagatgtccagttgagatgcttctcacctggc 282 ||||||| ||||||||||||||||| |||| ||||||||||| |||| |||| || Sbjct: 19701662 taccaagctttcagatctccaacaggtccagcagtccagttgaggcgcttgtcactgggt 19701603 Query: 283 tgtaagtatacggtctctgggtgcgggagcttgcgagcaaggccatttagaatctgatgg 342 || |||||||| ||||||||| || |||||||||||||||||||| | ||||| ||| Sbjct: 19701602 tgcaagtatactccctctgggtgtggaagcttgcgagcaaggccattcaagatctggtgg 19701543 Query: 343 aatgcatctcttggttgcgctggctgcgggaacaacatggccttcttcattgatgggttg 402 || |||||||||||||| |||||||| || ||||||||||||| |||||||||||| || Sbjct: 19701542 aacgcatctcttggttgggctggctgtggaaacaacatggcctgcttcattgatggattt 19701483 Query: 403 gcgagcaatctttgctt 419 || |||||||||||||| Sbjct: 19701482 gcaagcaatctttgctt 19701466
>dbj|AK107473.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-B06, full insert sequence Length = 2766 Score = 161 bits (81), Expect = 2e-36 Identities = 168/197 (85%) Strand = Plus / Minus Query: 223 taccaaggcttcagatctccaacaggcccagatgtccagttgagatgcttctcacctggc 282 ||||||| ||||||||||||||||| |||| ||||||||||| |||| |||| || Sbjct: 1451 taccaagctttcagatctccaacaggtccagcagtccagttgaggcgcttgtcactgggt 1392 Query: 283 tgtaagtatacggtctctgggtgcgggagcttgcgagcaaggccatttagaatctgatgg 342 || |||||||| ||||||||| || |||||||||||||||||||| | ||||| ||| Sbjct: 1391 tgcaagtatactccctctgggtgtggaagcttgcgagcaaggccattcaagatctggtgg 1332 Query: 343 aatgcatctcttggttgcgctggctgcgggaacaacatggccttcttcattgatgggttg 402 || |||||||||||||| |||||||| || ||||||||||||| |||||||||||| || Sbjct: 1331 aacgcatctcttggttgggctggctgtggaaacaacatggcctgcttcattgatggattt 1272 Query: 403 gcgagcaatctttgctt 419 || |||||||||||||| Sbjct: 1271 gcaagcaatctttgctt 1255
>dbj|AK073335.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026F13, full insert sequence Length = 1704 Score = 161 bits (81), Expect = 2e-36 Identities = 168/197 (85%) Strand = Plus / Minus Query: 223 taccaaggcttcagatctccaacaggcccagatgtccagttgagatgcttctcacctggc 282 ||||||| ||||||||||||||||| |||| ||||||||||| |||| |||| || Sbjct: 1510 taccaagctttcagatctccaacaggtccagcagtccagttgaggcgcttgtcactgggt 1451 Query: 283 tgtaagtatacggtctctgggtgcgggagcttgcgagcaaggccatttagaatctgatgg 342 || |||||||| ||||||||| || |||||||||||||||||||| | ||||| ||| Sbjct: 1450 tgcaagtatactccctctgggtgtggaagcttgcgagcaaggccattcaagatctggtgg 1391 Query: 343 aatgcatctcttggttgcgctggctgcgggaacaacatggccttcttcattgatgggttg 402 || |||||||||||||| |||||||| || ||||||||||||| |||||||||||| || Sbjct: 1390 aacgcatctcttggttgggctggctgtggaaacaacatggcctgcttcattgatggattt 1331 Query: 403 gcgagcaatctttgctt 419 || |||||||||||||| Sbjct: 1330 gcaagcaatctttgctt 1314
>dbj|AK059806.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-G11, full insert sequence Length = 1146 Score = 161 bits (81), Expect = 2e-36 Identities = 168/197 (85%) Strand = Plus / Minus Query: 223 taccaaggcttcagatctccaacaggcccagatgtccagttgagatgcttctcacctggc 282 ||||||| ||||||||||||||||| |||| ||||||||||| |||| |||| || Sbjct: 952 taccaagctttcagatctccaacaggtccagcagtccagttgaggcgcttgtcactgggt 893 Query: 283 tgtaagtatacggtctctgggtgcgggagcttgcgagcaaggccatttagaatctgatgg 342 || |||||||| ||||||||| || |||||||||||||||||||| | ||||| ||| Sbjct: 892 tgcaagtatactccctctgggtgtggaagcttgcgagcaaggccattcaagatctggtgg 833 Query: 343 aatgcatctcttggttgcgctggctgcgggaacaacatggccttcttcattgatgggttg 402 || |||||||||||||| |||||||| || ||||||||||||| |||||||||||| || Sbjct: 832 aacgcatctcttggttgggctggctgtggaaacaacatggcctgcttcattgatggattt 773 Query: 403 gcgagcaatctttgctt 419 || |||||||||||||| Sbjct: 772 gcaagcaatctttgctt 756
>emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039C07, complete sequence Length = 166410 Score = 161 bits (81), Expect = 2e-36 Identities = 168/197 (85%) Strand = Plus / Minus Query: 223 taccaaggcttcagatctccaacaggcccagatgtccagttgagatgcttctcacctggc 282 ||||||| ||||||||||||||||| |||| ||||||||||| |||| |||| || Sbjct: 152388 taccaagctttcagatctccaacaggtccagcagtccagttgaggcgcttgtcactgggt 152329 Query: 283 tgtaagtatacggtctctgggtgcgggagcttgcgagcaaggccatttagaatctgatgg 342 || |||||||| ||||||||| || |||||||||||||||||||| | ||||| ||| Sbjct: 152328 tgcaagtatactccctctgggtgtggaagcttgcgagcaaggccattcaagatctggtgg 152269 Query: 343 aatgcatctcttggttgcgctggctgcgggaacaacatggccttcttcattgatgggttg 402 || |||||||||||||| |||||||| || ||||||||||||| |||||||||||| || Sbjct: 152268 aacgcatctcttggttgggctggctgtggaaacaacatggcctgcttcattgatggattt 152209 Query: 403 gcgagcaatctttgctt 419 || |||||||||||||| Sbjct: 152208 gcaagcaatctttgctt 152192
>gb|AY104835.1| Zea mays PCO128889 mRNA sequence Length = 965 Score = 111 bits (56), Expect = 2e-21 Identities = 131/156 (83%) Strand = Plus / Minus Query: 297 ctctgggtgcgggagcttgcgagcaaggccatttagaatctgatggaatgcatctcttgg 356 |||||||||||||||||| ||||||||||| || | || || ||||| || || ||||| Sbjct: 901 ctctgggtgcgggagcttccgagcaaggccgttcaagatttggtggaacgcgtcccttgg 842 Query: 357 ttgcgctggctgcgggaacaacatggccttcttcattgatgggttggcgagcaatctttg 416 |||||||||||| ||||||||||| |||| |||||| ||||| || ||||| || ||||| Sbjct: 841 ttgcgctggctgtgggaacaacattgcctgcttcatcgatggatttgcgagtaacctttg 782 Query: 417 cttcctcaggatatcatcaatcgggatagacgtgag 452 |||||| | ||| ||||| || || || |||||||| Sbjct: 781 cttccttaagatgtcatctataggcatcgacgtgag 746
>gb|AY596523.1| Saccharum officinarum clone SCQGLR1019H07, complete sequence Length = 1928 Score = 107 bits (54), Expect = 3e-20 Identities = 87/98 (88%) Strand = Plus / Minus Query: 304 tgcgggagcttgcgagcaaggccatttagaatctgatggaatgcatctcttggttgcgct 363 |||||||||||||| || ||||||||||||||||| ||||||||||||| ||| || || Sbjct: 1573 tgcgggagcttgcgcgcgaggccatttagaatctggtggaatgcatctcctggctgagca 1514 Query: 364 ggctgcgggaacaacatggccttcttcattgatgggtt 401 ||||| ||||||| |||||||| |||||| |||||||| Sbjct: 1513 ggctgggggaacagcatggcctgcttcatcgatgggtt 1476
>ref|XM_463683.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1254 Score = 89.7 bits (45), Expect = 7e-15 Identities = 105/125 (84%) Strand = Plus / Minus Query: 310 agcttgcgagcaaggccatttagaatctgatggaatgcatctcttggttgcgctggctgc 369 ||||||||||| || ||||| || ||||||||||||||||||| || || || ||||| Sbjct: 1166 agcttgcgagcgagaccattcagtatctgatggaatgcatctcctgcctgagcaggctgg 1107 Query: 370 gggaacaacatggccttcttcattgatgggttggcgagcaatctttgcttcctcaggata 429 ||||||| |||||||| |||||| || ||||| ||||| | || ||||||||||||||| Sbjct: 1106 gggaacagcatggcctgcttcatcgacgggttcgcgagaagcctctgcttcctcaggata 1047 Query: 430 tcatc 434 |||| Sbjct: 1046 acatc 1042
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 89.7 bits (45), Expect = 7e-15 Identities = 105/125 (84%) Strand = Plus / Plus Query: 310 agcttgcgagcaaggccatttagaatctgatggaatgcatctcttggttgcgctggctgc 369 ||||||||||| || ||||| || ||||||||||||||||||| || || || ||||| Sbjct: 40625843 agcttgcgagcgagaccattcagtatctgatggaatgcatctcctgcctgagcaggctgg 40625902 Query: 370 gggaacaacatggccttcttcattgatgggttggcgagcaatctttgcttcctcaggata 429 ||||||| |||||||| |||||| || ||||| ||||| | || ||||||||||||||| Sbjct: 40625903 gggaacagcatggcctgcttcatcgacgggttcgcgagaagcctctgcttcctcaggata 40625962 Query: 430 tcatc 434 |||| Sbjct: 40625963 acatc 40625967 Score = 50.1 bits (25), Expect = 0.006 Identities = 55/65 (84%) Strand = Plus / Plus Query: 364 ggctgcgggaacaacatggccttcttcattgatgggttggcgagcaatctttgcttcctc 423 ||||||||||||| |||||||| |||||| || ||||| || |||| || ||||||| | Sbjct: 40619287 ggctgcgggaacagcatggcctgcttcatcgacgggttcgctagcagcctctgcttccgc 40619346 Query: 424 aggat 428 ||||| Sbjct: 40619347 aggat 40619351
>dbj|AP004332.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0093F16 Length = 160925 Score = 89.7 bits (45), Expect = 7e-15 Identities = 105/125 (84%) Strand = Plus / Plus Query: 310 agcttgcgagcaaggccatttagaatctgatggaatgcatctcttggttgcgctggctgc 369 ||||||||||| || ||||| || ||||||||||||||||||| || || || ||||| Sbjct: 67821 agcttgcgagcgagaccattcagtatctgatggaatgcatctcctgcctgagcaggctgg 67880 Query: 370 gggaacaacatggccttcttcattgatgggttggcgagcaatctttgcttcctcaggata 429 ||||||| |||||||| |||||| || ||||| ||||| | || ||||||||||||||| Sbjct: 67881 gggaacagcatggcctgcttcatcgacgggttcgcgagaagcctctgcttcctcaggata 67940 Query: 430 tcatc 434 |||| Sbjct: 67941 acatc 67945 Score = 50.1 bits (25), Expect = 0.006 Identities = 55/65 (84%) Strand = Plus / Plus Query: 364 ggctgcgggaacaacatggccttcttcattgatgggttggcgagcaatctttgcttcctc 423 ||||||||||||| |||||||| |||||| || ||||| || |||| || ||||||| | Sbjct: 61265 ggctgcgggaacagcatggcctgcttcatcgacgggttcgctagcagcctctgcttccgc 61324 Query: 424 aggat 428 ||||| Sbjct: 61325 aggat 61329
>dbj|AP003262.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0482D04 Length = 144583 Score = 89.7 bits (45), Expect = 7e-15 Identities = 105/125 (84%) Strand = Plus / Plus Query: 310 agcttgcgagcaaggccatttagaatctgatggaatgcatctcttggttgcgctggctgc 369 ||||||||||| || ||||| || ||||||||||||||||||| || || || ||||| Sbjct: 105858 agcttgcgagcgagaccattcagtatctgatggaatgcatctcctgcctgagcaggctgg 105917 Query: 370 gggaacaacatggccttcttcattgatgggttggcgagcaatctttgcttcctcaggata 429 ||||||| |||||||| |||||| || ||||| ||||| | || ||||||||||||||| Sbjct: 105918 gggaacagcatggcctgcttcatcgacgggttcgcgagaagcctctgcttcctcaggata 105977 Query: 430 tcatc 434 |||| Sbjct: 105978 acatc 105982 Score = 50.1 bits (25), Expect = 0.006 Identities = 55/65 (84%) Strand = Plus / Plus Query: 364 ggctgcgggaacaacatggccttcttcattgatgggttggcgagcaatctttgcttcctc 423 ||||||||||||| |||||||| |||||| || ||||| || |||| || ||||||| | Sbjct: 99302 ggctgcgggaacagcatggcctgcttcatcgacgggttcgctagcagcctctgcttccgc 99361 Query: 424 aggat 428 ||||| Sbjct: 99362 aggat 99366
>gb|BT018089.1| Zea mays clone EL01N0552D06.c mRNA sequence Length = 1163 Score = 69.9 bits (35), Expect = 7e-09 Identities = 101/123 (82%) Strand = Plus / Minus Query: 303 gtgcgggagcttgcgagcaaggccatttagaatctgatggaatgcatctcttggttgcgc 362 ||||||||||||||| || || || || |||||||| ||||| || |||| || ||| || Sbjct: 795 gtgcgggagcttgcgcgcgagaccgttcagaatctggtggaacgcgtctcctgcttgagc 736 Query: 363 tggctgcgggaacaacatggccttcttcattgatgggttggcgagcaatctttgcttcct 422 ||||| ||||||| |||||||| |||||| || ||||| ||||| | | ||||||||| Sbjct: 735 aggctgtgggaacagcatggcctgcttcatagacgggttcgcgaggagccgttgcttcct 676 Query: 423 cag 425 ||| Sbjct: 675 cag 673
>ref|XM_463682.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1248 Score = 50.1 bits (25), Expect = 0.006 Identities = 55/65 (84%) Strand = Plus / Minus Query: 364 ggctgcgggaacaacatggccttcttcattgatgggttggcgagcaatctttgcttcctc 423 ||||||||||||| |||||||| |||||| || ||||| || |||| || ||||||| | Sbjct: 1106 ggctgcgggaacagcatggcctgcttcatcgacgggttcgctagcagcctctgcttccgc 1047 Query: 424 aggat 428 ||||| Sbjct: 1046 aggat 1042
>dbj|AK068465.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156C14, full insert sequence Length = 1739 Score = 50.1 bits (25), Expect = 0.006 Identities = 55/65 (84%) Strand = Plus / Minus Query: 364 ggctgcgggaacaacatggccttcttcattgatgggttggcgagcaatctttgcttcctc 423 ||||||||||||| |||||||| |||||| || ||||| || |||| || ||||||| | Sbjct: 1246 ggctgcgggaacagcatggcctgcttcatcgacgggttcgctagcagcctctgcttccgc 1187 Query: 424 aggat 428 ||||| Sbjct: 1186 aggat 1182
>gb|AY107251.1| Zea mays PCO120698 mRNA sequence Length = 1033 Score = 44.1 bits (22), Expect = 0.39 Identities = 40/46 (86%) Strand = Plus / Minus Query: 364 ggctgcgggaacaacatggccttcttcattgatgggttggcgagca 409 ||||||||||||| |||||||| |||||| || || || ||||||| Sbjct: 611 ggctgcgggaacagcatggcctgcttcatggacggattcgcgagca 566
>gb|AC147997.3| Mus musculus BAC clone RP24-196D17 from chromosome 18, complete sequence Length = 166172 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 ttaatttctttacttctttat 36 ||||||||||||||||||||| Sbjct: 11954 ttaatttctttacttctttat 11934
>gb|AC145967.3| Pan troglodytes BAC clone RP43-17M21 from 7, complete sequence Length = 179148 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 195 accaggtcttgtaaggaagct 215 ||||||||||||||||||||| Sbjct: 147463 accaggtcttgtaaggaagct 147443
>gb|AC147100.2| Pan troglodytes BAC clone RP43-45I10 from 7, complete sequence Length = 150235 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 accaggtcttgtaaggaagct 215 ||||||||||||||||||||| Sbjct: 29749 accaggtcttgtaaggaagct 29769
>gb|AC092465.5| Homo sapiens BAC clone RP11-473L7 from 7, complete sequence Length = 188158 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 195 accaggtcttgtaaggaagct 215 ||||||||||||||||||||| Sbjct: 76808 accaggtcttgtaaggaagct 76788
>gb|AC146375.3| Pan troglodytes BAC clone RP43-75I2 from 7, complete sequence Length = 205242 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 accaggtcttgtaaggaagct 215 ||||||||||||||||||||| Sbjct: 77363 accaggtcttgtaaggaagct 77383
>gb|AC122823.2| Mus musculus BAC clone RP23-205I22 from 18, complete sequence Length = 203725 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 ttaatttctttacttctttat 36 ||||||||||||||||||||| Sbjct: 34590 ttaatttctttacttctttat 34610
>gb|AC002385.1| Homo sapiens BAC clone CTA-222A16 from 7, complete sequence Length = 201990 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 accaggtcttgtaaggaagct 215 ||||||||||||||||||||| Sbjct: 19209 accaggtcttgtaaggaagct 19229
>gb|AC102031.7| Mus musculus chromosome 3, clone RP23-14C8, complete sequence Length = 181179 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 17 taatttctttacttctttata 37 ||||||||||||||||||||| Sbjct: 96771 taatttctttacttctttata 96791
>emb|AL603758.3| Human DNA sequence from clone RP11-529O20 on chromosome X Contains an olfactory receptor, family 2, subfamily J, member 3 (OR2J3) pseudogene, complete sequence Length = 50887 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 72 acaatttttagtcgagtgaca 92 ||||||||||||||||||||| Sbjct: 13869 acaatttttagtcgagtgaca 13889
>gb|AC108211.3| Homo sapiens BAC clone RP11-511I14 from 4, complete sequence Length = 222457 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 tttaatttctttacttcttta 35 ||||||||||||||||||||| Sbjct: 75559 tttaatttctttacttcttta 75539
>emb|BX276095.7| Zebrafish DNA sequence from clone CH211-225H17, complete sequence Length = 197554 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 atattgtataattctatggat 135 ||||||||||||||||||||| Sbjct: 139739 atattgtataattctatggat 139759
>emb|Y11098.1|SGMV2589 Sida golden mosaic Honduras virus segment B, complete sequence Length = 2589 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 aagaacactcgtttaatttct 24 ||||||||||||||||||||| Sbjct: 2424 aagaacactcgtttaatttct 2444
>gb|AE000657.1| Aquifex aeolicus VF5, complete genome Length = 1551335 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 ctcgtttaatttctttacttc 31 ||||||||||||||||||||| Sbjct: 1087678 ctcgtttaatttctttacttc 1087658
>ref|XM_510279.1| PREDICTED: Pan troglodytes similar to piggyBac transposable element derived 4 (LOC453299), mRNA Length = 952 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 ccatttagaatctgatggaa 344 |||||||||||||||||||| Sbjct: 111 ccatttagaatctgatggaa 130
>ref|NM_146649.1| Mus musculus olfactory receptor 1160 (Olfr1160), mRNA Length = 960 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 tgcttctcacctggctgtaa 287 |||||||||||||||||||| Sbjct: 747 tgcttctcacctggctgtaa 766
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 gttgcgctggctgcgggaac 375 |||||||||||||||||||| Sbjct: 3169056 gttgcgctggctgcgggaac 3169075
>gb|AY368235.2| Burkholderia cepacia phage Bcep43, complete genome Length = 48024 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 caacgttacaaccggttacg 63 |||||||||||||||||||| Sbjct: 21978 caacgttacaaccggttacg 21959
>gb|AF543311.2| Burkholderia cepacia phage Bcep781, complete genome Length = 48247 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 caacgttacaaccggttacg 63 |||||||||||||||||||| Sbjct: 21982 caacgttacaaccggttacg 21963
>gb|AC129189.3| Mus musculus BAC clone RP24-67O22 from chromosome 15, complete sequence Length = 152947 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 atcaacaaaaccaggtcttg 205 |||||||||||||||||||| Sbjct: 149162 atcaacaaaaccaggtcttg 149143
>gb|AC158915.4| Mus musculus chromosome 8, clone RP23-146N20, complete sequence Length = 207367 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 gtttaatttctttacttctttata 37 |||||||||||| ||||||||||| Sbjct: 192299 gtttaatttcttaacttctttata 192322
>ref|NM_152595.3| Homo sapiens piggyBac transposable element derived 4 (PGBD4), mRNA Length = 3908 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 ccatttagaatctgatggaa 344 |||||||||||||||||||| Sbjct: 625 ccatttagaatctgatggaa 644
>gb|AY318360.1| Mus musculus olfactory receptor Olfr1160 (Olfr1160) gene, complete cds Length = 933 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 tgcttctcacctggctgtaa 287 |||||||||||||||||||| Sbjct: 720 tgcttctcacctggctgtaa 739
>gb|AC124764.3| Mus musculus BAC clone RP23-166K1 from chromosome 18, complete sequence Length = 209579 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 217 ttatgttaccaaggcttcagatctccaa 244 ||||||||||||||||||| ||||||| Sbjct: 114319 ttatgttaccaaggcttcacttctccaa 114346
>ref|XM_532552.2| PREDICTED: Canis familiaris similar to Probable U3 small nucleolar RNA-associated protein 11 (U3 snoRNA-associated protein 11) (LOC475325), mRNA Length = 842 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 tctccaacaggcccagatgt 257 |||||||||||||||||||| Sbjct: 157 tctccaacaggcccagatgt 138
>gb|AC079203.9| Homo sapiens chromosome 15, clone RP11-1084A12, complete sequence Length = 197568 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 ccatttagaatctgatggaa 344 |||||||||||||||||||| Sbjct: 38974 ccatttagaatctgatggaa 38993
>gb|AC121803.3| Mus musculus BAC clone RP23-441A23 from chromosome 6, complete sequence Length = 211809 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 agaaaggcaataaaagaaac 170 |||||||||||||||||||| Sbjct: 3755 agaaaggcaataaaagaaac 3736
>gb|AC162297.5| Mus musculus chromosome 18, clone RP24-276H6, complete sequence Length = 190293 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 217 ttatgttaccaaggcttcagatctccaa 244 ||||||||||||||||||| ||||||| Sbjct: 7939 ttatgttaccaaggcttcacttctccaa 7966
>gb|DQ411028.1| Malvastrum yellow mosaic virus - Jamaica movement protein gene, complete cds; and nuclear shuttle protein gene, partial cds Length = 1375 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 aagaacactcgtttaatttc 23 |||||||||||||||||||| Sbjct: 327 aagaacactcgtttaatttc 346
>emb|AL596090.11| Mouse DNA sequence from clone RP23-135F6 on chromosome 11 Contains the 5' end of the gene for the likely ortholog of H. sapiens target of myb1-like 2 (chicken) (TOM1L2) (A730055F12Rik), a glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene, the gene for a novel Leucine Rich Repeat domain-containing protein (4930449E07Rik), the Atpaf2 gene for ATP synthase mitochondrial F1 complex assembly factor 2, the gene for a novel protein (4933439F18Rik), an acid phosphatase 1 soluble (Acp1) pseudogene, a ribosomal protein S4, X-linked (Rps4x) pseudogene, the Drg2 gene for developmentally regulated GTP binding protein 2, the 5' end of the Myo15 gene for myosin XV and four CpG islands, complete sequence Length = 207440 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 aaagaaaccgaacttttcac 182 |||||||||||||||||||| Sbjct: 59748 aaagaaaccgaacttttcac 59729
>gb|AC101771.11| Mus musculus chromosome 15, clone RP24-104H19, complete sequence Length = 153992 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 atcaacaaaaccaggtcttg 205 |||||||||||||||||||| Sbjct: 108813 atcaacaaaaccaggtcttg 108794
>dbj|AK057200.1| Homo sapiens cDNA FLJ32638 fis, clone SYNOV2000820, weakly similar to Trichoplusia ni transposon IFP2 Length = 2203 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 ccatttagaatctgatggaa 344 |||||||||||||||||||| Sbjct: 625 ccatttagaatctgatggaa 644
>gb|AY073447.1| Mus musculus olfactory receptor MOR173-1 gene, complete cds Length = 960 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 tgcttctcacctggctgtaa 287 |||||||||||||||||||| Sbjct: 747 tgcttctcacctggctgtaa 766
>gb|AC108056.3| Homo sapiens BAC clone RP11-366I1 from 4, complete sequence Length = 174916 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 178 ttcacaagatcaacaaaaccaggtcttg 205 |||| |||||||||||||||||| |||| Sbjct: 98597 ttcaaaagatcaacaaaaccaggacttg 98570
>gb|AC159284.2| Mus musculus BAC clone RP23-318K10 from chromosome 6, complete sequence Length = 188553 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 agaaaggcaataaaagaaac 170 |||||||||||||||||||| Sbjct: 9541 agaaaggcaataaaagaaac 9560
>gb|AC121140.7| Mus musculus chromosome 8, clone RP23-429G12, complete sequence Length = 201440 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 gtttaatttctttacttctttata 37 |||||||||||| ||||||||||| Sbjct: 145369 gtttaatttcttaacttctttata 145392
>emb|BX649332.3| Zebrafish DNA sequence from clone CH211-243P21 in linkage group 4, complete sequence Length = 122049 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 aacacacctcaatattgtataatt 127 ||||||| |||||||||||||||| Sbjct: 87278 aacacacatcaatattgtataatt 87255
>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome Length = 2343476 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 gttggcgagcaatctttgct 418 |||||||||||||||||||| Sbjct: 744865 gttggcgagcaatctttgct 744884
>dbj|AP001359.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-820L6, complete sequences Length = 221535 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 gtttaatttctttacttctt 33 |||||||||||||||||||| Sbjct: 43432 gtttaatttctttacttctt 43413
>dbj|AP001924.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-166D19, complete sequence Length = 190360 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 gtttaatttctttacttctt 33 |||||||||||||||||||| Sbjct: 125071 gtttaatttctttacttctt 125052 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,379,100 Number of Sequences: 3902068 Number of extensions: 4379100 Number of successful extensions: 85150 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84944 Number of HSP's gapped (non-prelim): 206 length of query: 457 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 435 effective length of database: 17,147,199,772 effective search space: 7459031900820 effective search space used: 7459031900820 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)