ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet72g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZN434_HUMAN (Q9NX65) Zinc finger protein 434 31 0.84
2PLVAP_MOUSE (Q91VC4) Plasmalemma vesicle-associated protein (Pla... 28 4.2
33CL_HUMAN (Q13412) Pre-T/NK cell-associated protein 3Cl 28 5.5

>ZN434_HUMAN (Q9NX65) Zinc finger protein 434|
          Length = 485

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
 Frame = +2

Query: 152 SRLYKARSGHPRDTRERQCHDDRIHQSDK*PSQEAIKRK----RPAACTRRHCGDPC 310
           S L K     P  T  RQC +      +K PSQE +  +    R  ACT   CG  C
Sbjct: 237 SELQKGLESEP--TSRRQCRNSPGESEEKTPSQEKMSHQSFCARDKACTHILCGKNC 291



to top

>PLVAP_MOUSE (Q91VC4) Plasmalemma vesicle-associated protein (Plasmalemma|
           vesicle protein 1) (PV-1) (MECA-32 antigen)
          Length = 438

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 104 DQQEGCVYFFSSLILWQTIIYVTDYYGVIYFILY 3
           DQQ GC Y+     L+ ++I      G++ F++Y
Sbjct: 15  DQQRGCWYYLRYFFLFVSLIQFLIILGLVLFMIY 48



to top

>3CL_HUMAN (Q13412) Pre-T/NK cell-associated protein 3Cl|
          Length = 51

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -1

Query: 321 QEQPQGSPQWR---RVQAAGRLRLIASWLGYLSL*WMRSSWHCRSRVS 187
           QE       WR   R  ++ R + I SWL YLS   + +SW+C+ ++S
Sbjct: 5   QETVYSCEYWRTFKRYFSSWRFK-IRSWLTYLSWGLLCTSWYCKVKMS 51


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,283,550
Number of Sequences: 219361
Number of extensions: 633653
Number of successful extensions: 1303
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top