Clone Information

BLAST Search Result

Clone Name	rbaet72f06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_466811.1\| Oryza sativa (japonica cultivar-group), mRNA	898	0.0
2	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	898	0.0
3	dbj\|AP004053.3\| Oryza sativa (japonica cultivar-group) genomic D...	898	0.0
4	dbj\|AK101388.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	898	0.0
5	emb\|AJ487966.1\|OSA487966 Oryza sativa (japonica cultivar-group) ...	850	0.0
6	gb\|AY112029.1\| Zea mays CL14517_1 mRNA sequence	50	0.006
7	emb\|AL445423.13\| Human DNA sequence from clone RP11-295M18 on ch...	44	0.39
8	emb\|AL021921.1\|HS357I16 Human DNA sequence from clone RP3-357I16...	44	0.39
9	gb\|U95738.1\|HSU95738 Human chromosome 16p13.11 BAC clone CIT987S...	44	0.39
10	gb\|BC047433.1\| Mus musculus bromo adjacent homology domain conta...	42	1.6
11	gb\|AF465266.1\| Zea mays cytochrome P450 monooxygenase CYP72A27 g...	42	1.6
12	ref\|XM_980805.1\| PREDICTED: Mus musculus bromo adjacent homology...	42	1.6
13	ref\|XM_130491.6\| PREDICTED: Mus musculus bromo adjacent homology...	42	1.6
14	ref\|XM_917499.2\| PREDICTED: Mus musculus bromo adjacent homology...	42	1.6
15	emb\|AL451045.14\| Human DNA sequence from clone RP11-549E17 on ch...	42	1.6
16	emb\|AL136088.10\| Human DNA sequence from clone RP5-1024C24 on ch...	42	1.6
17	emb\|BX248584.1\| Blochmannia floridanus complete genome; segment 1/3	42	1.6
18	dbj\|AK152597.1\| Mus musculus bone marrow macrophage cDNA, RIKEN ...	42	1.6
19	dbj\|AK129243.1\| Mus musculus mRNA for mKIAA0945 protein	42	1.6
20	gb\|BC100358.1\| Mus musculus bromo adjacent homology domain conta...	42	1.6
21	emb\|AL845164.5\| Mouse DNA sequence from clone RP23-286G12 on chr...	42	1.6
22	gb\|AC008139.9\| Drosophila melanogaster clone BACR28B01, complete...	40	6.2
23	gb\|AY574035.1\| Zea mays rust resistance protein rp3-1 (rp3-1) ge...	40	6.2
24	ref\|XM_568974.1\| Cryptococcus neoformans var. neoformans JEC21 a...	40	6.2
25	ref\|XM_761237.1\| Theileria parva strain Muguga chromosome 1 RNA ...	40	6.2
26	emb\|AL590452.12\| Human DNA sequence from clone RP11-326G21 on ch...	40	6.2
27	emb\|AL589823.10\| Human DNA sequence from clone RP11-341A22 on ch...	40	6.2
28	emb\|AL353802.14\| Human DNA sequence from clone RP4-662P1 on chro...	40	6.2
29	gb\|AE017342.1\| Cryptococcus neoformans var. neoformans JEC21 chr...	40	6.2
30	gb\|AC183687.3\| Pan troglodytes BAC clone CH251-25N14 from chromo...	40	6.2
31	dbj\|AP006716.1\| Staphylococcus haemolyticus JCSC1435 DNA, comple...	40	6.2
32	gb\|AC022489.7\| Homo sapiens BAC clone RP11-671P3 from 4, complet...	40	6.2
33	gb\|AC008357.8\| Drosophila melanogaster, chromosome 3R, region 86...	40	6.2
34	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
35	gb\|AC078952.20\| Homo sapiens 3 BAC RP11-764E15 (Roswell Park Can...	40	6.2
36	gb\|AC175464.1\| Mus musculus BAC clone RP23-129E4 from chromosome...	40	6.2
37	dbj\|BS000008.1\| Pan troglodytes chromosome 22 clone:RP43-011E05,...	40	6.2
38	gb\|AY555142.1\| Zea mays BAC clone c573F08, complete sequence	40	6.2
39	emb\|BX681417.10\| Zebrafish DNA sequence from clone DKEY-161L11 i...	40	6.2
40	emb\|BX897693.12\| Zebrafish DNA sequence from clone CH211-147C1 i...	40	6.2
41	emb\|BX927258.8\| Zebrafish DNA sequence from clone CH211-279M15 i...	40	6.2
42	emb\|BX119973.7\| Zebrafish DNA sequence from clone RP71-77D7 in l...	40	6.2
43	gb\|AE003686.4\| Drosophila melanogaster chromosome 3R, section 24...	40	6.2
44	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.2
45	emb\|AL831795.4\|CNS08CA8 Oryza sativa chromosome 12, . BAC OSJNBb...	40	6.2
46	gb\|CP000155.1\| Hahella chejuensis KCTC 2396, complete genome	40	6.2
47	emb\|AL645586.9\| Mouse DNA sequence from clone RP23-302O5 on chro...	40	6.2

>ref|XM_466811.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2403

 Score =  898 bits (453), Expect = 0.0
 Identities = 456/457 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    gctagtaatgaactgctttatttcaataacatttctacaaatatttgatcaacatcagca 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2200 gctagtaatgaactgctttatttcaataacatttctacaaatatttgatcaacatcagca 2141

                                                                        
Query: 61   ttaattggaccagcacagttgctggtccgggttcttctgaatggcgtgtaaaatgatttc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2140 ttaattggaccagcacagttgctggtccgggttcttctgaatggcgtgtaaaatgatttc 2081

                                                                        
Query: 121  tttaaccatttcttttgcgccaagattcagtaagcaaacttcactcttaagcatatctca 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2080 tttaaccatttcttttgcgccaagattcagtaagcaaacttcactcttaagcatatctca 2021

                                                                        
Query: 181  gcatcatctgtagcacagaatggtttttacttgttgatcagtaatcatcgtgtgaaggaa 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2020 gcatcatctgtagcacagaatggtttttacttgttgatcagtaatcatcgtgtgaaggaa 1961

                                                                        
Query: 241  tccccagtgtcctcactggagcagcaactcacatcttttgctcttcgaagcattatttcc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1960 tccccagtgtcctcactggagcagcaactcacatcttttgctcttcgaagcattatttcc 1901

                                                                        
Query: 301  ttctgtcagcactgattgaaagacgttcaaaggtcctcaaagtgggatcatcatggacat 360
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1900 ttctgtcagcactgattgaaaggcgttcaaaggtcctcaaagtgggatcatcatggacat 1841

                                                                        
Query: 361  ttcttgcagttttggtaagcgaggacctggtctcaagtcctgttgactggtgaagcctct 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1840 ttcttgcagttttggtaagcgaggacctggtctcaagtcctgttgactggtgaagcctct 1781

                                                 
Query: 421  gcatagttgatgggcgactgctgccactgctggttgg 457
            |||||||||||||||||||||||||||||||||||||
Sbjct: 1780 gcatagttgatgggcgactgctgccactgctggttgg 1744

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  898 bits (453), Expect = 0.0
 Identities = 456/457 (99%)
 Strand = Plus / Minus

                                                                            
Query: 1        gctagtaatgaactgctttatttcaataacatttctacaaatatttgatcaacatcagca 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24791940 gctagtaatgaactgctttatttcaataacatttctacaaatatttgatcaacatcagca 24791881

                                                                            
Query: 61       ttaattggaccagcacagttgctggtccgggttcttctgaatggcgtgtaaaatgatttc 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24791880 ttaattggaccagcacagttgctggtccgggttcttctgaatggcgtgtaaaatgatttc 24791821

                                                                            
Query: 121      tttaaccatttcttttgcgccaagattcagtaagcaaacttcactcttaagcatatctca 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24791820 tttaaccatttcttttgcgccaagattcagtaagcaaacttcactcttaagcatatctca 24791761

                                                                            
Query: 181      gcatcatctgtagcacagaatggtttttacttgttgatcagtaatcatcgtgtgaaggaa 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24791760 gcatcatctgtagcacagaatggtttttacttgttgatcagtaatcatcgtgtgaaggaa 24791701

                                                                            
Query: 241      tccccagtgtcctcactggagcagcaactcacatcttttgctcttcgaagcattatttcc 300
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24791700 tccccagtgtcctcactggagcagcaactcacatcttttgctcttcgaagcattatttcc 24791641

                                                                            
Query: 301      ttctgtcagcactgattgaaagacgttcaaaggtcctcaaagtgggatcatcatggacat 360
                |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 24791640 ttctgtcagcactgattgaaaggcgttcaaaggtcctcaaagtgggatcatcatggacat 24791581

                                                                            
Query: 361      ttcttgcagttttggtaagcgaggacctggtctcaagtcctgttgactggtgaagcctct 420
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24791580 ttcttgcagttttggtaagcgaggacctggtctcaagtcctgttgactggtgaagcctct 24791521

                                                     
Query: 421      gcatagttgatgggcgactgctgccactgctggttgg 457
                |||||||||||||||||||||||||||||||||||||
Sbjct: 24791520 gcatagttgatgggcgactgctgccactgctggttgg 24791484

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>dbj|AP004053.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1234_B11
          Length = 128095

 Score =  898 bits (453), Expect = 0.0
 Identities = 456/457 (99%)
 Strand = Plus / Minus

                                                                         
Query: 1     gctagtaatgaactgctttatttcaataacatttctacaaatatttgatcaacatcagca 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91588 gctagtaatgaactgctttatttcaataacatttctacaaatatttgatcaacatcagca 91529

                                                                         
Query: 61    ttaattggaccagcacagttgctggtccgggttcttctgaatggcgtgtaaaatgatttc 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91528 ttaattggaccagcacagttgctggtccgggttcttctgaatggcgtgtaaaatgatttc 91469

                                                                         
Query: 121   tttaaccatttcttttgcgccaagattcagtaagcaaacttcactcttaagcatatctca 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91468 tttaaccatttcttttgcgccaagattcagtaagcaaacttcactcttaagcatatctca 91409

                                                                         
Query: 181   gcatcatctgtagcacagaatggtttttacttgttgatcagtaatcatcgtgtgaaggaa 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91408 gcatcatctgtagcacagaatggtttttacttgttgatcagtaatcatcgtgtgaaggaa 91349

                                                                         
Query: 241   tccccagtgtcctcactggagcagcaactcacatcttttgctcttcgaagcattatttcc 300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91348 tccccagtgtcctcactggagcagcaactcacatcttttgctcttcgaagcattatttcc 91289

                                                                         
Query: 301   ttctgtcagcactgattgaaagacgttcaaaggtcctcaaagtgggatcatcatggacat 360
             |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 91288 ttctgtcagcactgattgaaaggcgttcaaaggtcctcaaagtgggatcatcatggacat 91229

                                                                         
Query: 361   ttcttgcagttttggtaagcgaggacctggtctcaagtcctgttgactggtgaagcctct 420
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91228 ttcttgcagttttggtaagcgaggacctggtctcaagtcctgttgactggtgaagcctct 91169

                                                  
Query: 421   gcatagttgatgggcgactgctgccactgctggttgg 457
             |||||||||||||||||||||||||||||||||||||
Sbjct: 91168 gcatagttgatgggcgactgctgccactgctggttgg 91132

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>dbj|AK101388.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033036G08, full
            insert sequence
          Length = 2403

 Score =  898 bits (453), Expect = 0.0
 Identities = 456/457 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    gctagtaatgaactgctttatttcaataacatttctacaaatatttgatcaacatcagca 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2200 gctagtaatgaactgctttatttcaataacatttctacaaatatttgatcaacatcagca 2141

                                                                        
Query: 61   ttaattggaccagcacagttgctggtccgggttcttctgaatggcgtgtaaaatgatttc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2140 ttaattggaccagcacagttgctggtccgggttcttctgaatggcgtgtaaaatgatttc 2081

                                                                        
Query: 121  tttaaccatttcttttgcgccaagattcagtaagcaaacttcactcttaagcatatctca 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2080 tttaaccatttcttttgcgccaagattcagtaagcaaacttcactcttaagcatatctca 2021

                                                                        
Query: 181  gcatcatctgtagcacagaatggtttttacttgttgatcagtaatcatcgtgtgaaggaa 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2020 gcatcatctgtagcacagaatggtttttacttgttgatcagtaatcatcgtgtgaaggaa 1961

                                                                        
Query: 241  tccccagtgtcctcactggagcagcaactcacatcttttgctcttcgaagcattatttcc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1960 tccccagtgtcctcactggagcagcaactcacatcttttgctcttcgaagcattatttcc 1901

                                                                        
Query: 301  ttctgtcagcactgattgaaagacgttcaaaggtcctcaaagtgggatcatcatggacat 360
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1900 ttctgtcagcactgattgaaaggcgttcaaaggtcctcaaagtgggatcatcatggacat 1841

                                                                        
Query: 361  ttcttgcagttttggtaagcgaggacctggtctcaagtcctgttgactggtgaagcctct 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1840 ttcttgcagttttggtaagcgaggacctggtctcaagtcctgttgactggtgaagcctct 1781

                                                 
Query: 421  gcatagttgatgggcgactgctgccactgctggttgg 457
            |||||||||||||||||||||||||||||||||||||
Sbjct: 1780 gcatagttgatgggcgactgctgccactgctggttgg 1744

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>emb|AJ487966.1|OSA487966 Oryza sativa (japonica cultivar-group) partial mRNA for putative
            casein kinase I
          Length = 1939

 Score =  850 bits (429), Expect = 0.0
 Identities = 454/460 (98%), Gaps = 3/460 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    gctagtaatgaactgctttatttcaataacatttctacaaatatttgatcaacatcagca 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1687 gctagtaatgaactgctttatttcaataacatttctacaaatatttgatcaacatcagca 1628

                                                                        
Query: 61   ttaattggaccagcacag-ttgctggtccgggttcttctgaatggcgtgtaaaatgattt 119
            |||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1627 ttaattggaccagcacgggttgctggtccgggttcttctgaatggcgtgtaaaatggttt 1568

                                                                        
Query: 120  ctttaaccatttcttttgcgccaagattcagtaagcaaacttcactcttaagcatatctc 179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1567 ctttaaccatttcttttgcgccaagattcagtaagcaaacttcactcttaagcatatctc 1508

                                                                        
Query: 180  agcatcatctgtagcacagaatggtttttacttgttgatcagtaatcatcgtgtgaagga 239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1507 agcatcatctgtagcacagaatggtttttacttgttgatcagtaatcatcgtgtgaagga 1448

                                                                        
Query: 240  atccccagtgtcct--cactggagcagcaactcacatcttttgctcttcgaagcattatt 297
            ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1447 atccccagtgtcctascactggagcagcaactcacatcttttgctcttcgaagcattatt 1388

                                                                        
Query: 298  tccttctgtcagcactgattgaaagacgttcaaaggtcctcaaagtgggatcatcatgga 357
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1387 tccttctgtcagcactgattgaaaggcgttcaaaggtcctcaaagtgggatcatcatgga 1328

                                                                        
Query: 358  catttcttgcagttttggtaagcgaggacctggtctcaagtcctgttgactggtgaagcc 417
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1327 catttcttgcagttttggtaagcgaggacctggtctcaagtcctgttgactggtgaagcc 1268

                                                    
Query: 418  tctgcatagttgatgggcgactgctgccactgctggttgg 457
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1267 tctgcatagttgatgggcgactgctgccactgctggttgg 1228

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>gb|AY112029.1| Zea mays CL14517_1 mRNA sequence
          Length = 679

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                
Query: 392 ctcaagtcctgttgactggtgaagcctctgcatagttgatgggcgactgctgc 444
           ||||||||| ||||||||||||||||| ||  | |||||||| || |||||||
Sbjct: 455 ctcaagtccagttgactggtgaagcctttgattggttgatggacggctgctgc 507

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>emb|AL445423.13| Human DNA sequence from clone RP11-295M18 on chromosome 1 Contains the 3'
              end of a novel gene (FLJ22390), two novel genes, the HLX1
              gene for H2.0-like homeo box 1 (Drosophila) and four CpG
              islands, complete sequence
          Length = 177941

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 109    taaaatgatttctttaaccatt 130
              ||||||||||||||||||||||
Sbjct: 156342 taaaatgatttctttaaccatt 156321

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>emb|AL021921.1|HS357I16 Human DNA sequence from clone RP3-357I16 on chromosome 1p36.13,
             complete sequence
          Length = 134506

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 177   ctcagcatcatctgtagcacag 198
             ||||||||||||||||||||||
Sbjct: 52523 ctcagcatcatctgtagcacag 52544

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>gb|U95738.1|HSU95738 Human chromosome 16p13.11 BAC clone CIT987SK-29B12 complete sequence
          Length = 171368

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 177   ctcagcatcatctgtagcacag 198
             ||||||||||||||||||||||
Sbjct: 93460 ctcagcatcatctgtagcacag 93439

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>gb|BC047433.1| Mus musculus bromo adjacent homology domain containing 1, mRNA
           (cDNA clone IMAGE:4954146), partial cds
          Length = 3213

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 244 ccagtgtcctcactggagcag 264
           |||||||||||||||||||||
Sbjct: 216 ccagtgtcctcactggagcag 196

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>gb|AF465266.1| Zea mays cytochrome P450 monooxygenase CYP72A27 gene, partial cds
          Length = 3319

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 283 cttcgaagcattatttccttc 303
           |||||||||||||||||||||
Sbjct: 194 cttcgaagcattatttccttc 174

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>ref|XM_980805.1| PREDICTED: Mus musculus bromo adjacent homology domain containing 1
            (Bahd1), mRNA
          Length = 2082

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 244  ccagtgtcctcactggagcag 264
            |||||||||||||||||||||
Sbjct: 1223 ccagtgtcctcactggagcag 1203

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>ref|XM_130491.6| PREDICTED: Mus musculus bromo adjacent homology domain containing 1,
            transcript variant 1 (Bahd1), mRNA
          Length = 4361

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 244  ccagtgtcctcactggagcag 264
            |||||||||||||||||||||
Sbjct: 1394 ccagtgtcctcactggagcag 1374

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>ref|XM_917499.2| PREDICTED: Mus musculus bromo adjacent homology domain containing 1,
            transcript variant 3 (Bahd1), mRNA
          Length = 4362

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 244  ccagtgtcctcactggagcag 264
            |||||||||||||||||||||
Sbjct: 1394 ccagtgtcctcactggagcag 1374

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>emb|AL451045.14| Human DNA sequence from clone RP11-549E17 on chromosome 9, complete
             sequence
          Length = 87074

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 34    tctacaaatatttgatcaaca 54
             |||||||||||||||||||||
Sbjct: 77433 tctacaaatatttgatcaaca 77413

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>emb|AL136088.10| Human DNA sequence from clone RP5-1024C24 on chromosome 11p13-14.1
             Contains the C11ORF8 gene, ESTs, STSs, GSSs and a CpG
             island, complete sequence
          Length = 108135

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 32    tttctacaaatatttgatcaa 52
             |||||||||||||||||||||
Sbjct: 66827 tttctacaaatatttgatcaa 66847

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>emb|BX248584.1| Blochmannia floridanus complete genome; segment 1/3
          Length = 250050

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 34    tctacaaatatttgatcaaca 54
             |||||||||||||||||||||
Sbjct: 51237 tctacaaatatttgatcaaca 51217

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>dbj|AK152597.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched
            library, clone:I830080L10 product:hypothetical Bromo
            adjacent region/Proline-rich region profile/Arginine-rich
            region profile containing protein, full insert sequence
          Length = 4357

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 244  ccagtgtcctcactggagcag 264
            |||||||||||||||||||||
Sbjct: 1406 ccagtgtcctcactggagcag 1386

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>dbj|AK129243.1| Mus musculus mRNA for mKIAA0945 protein
          Length = 4577

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 244  ccagtgtcctcactggagcag 264
            |||||||||||||||||||||
Sbjct: 1625 ccagtgtcctcactggagcag 1605

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>gb|BC100358.1| Mus musculus bromo adjacent homology domain containing 1, transcript
            variant 1, mRNA (cDNA clone MGC:117747 IMAGE:30848279),
            complete cds
          Length = 4614

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 244  ccagtgtcctcactggagcag 264
            |||||||||||||||||||||
Sbjct: 1629 ccagtgtcctcactggagcag 1609

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>emb|AL845164.5| Mouse DNA sequence from clone RP23-286G12 on chromosome 2, complete
            sequence
          Length = 115921

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 244  ccagtgtcctcactggagcag 264
            |||||||||||||||||||||
Sbjct: 8482 ccagtgtcctcactggagcag 8462

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>gb|AC008139.9| Drosophila melanogaster clone BACR28B01, complete sequence
          Length = 170675

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     atcaacatcagcattaattg 67
              ||||||||||||||||||||
Sbjct: 158766 atcaacatcagcattaattg 158747

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>gb|AY574035.1| Zea mays rust resistance protein rp3-1 (rp3-1) gene, complete cds; and
              truncated rust resistance protein rp3-2t (rp3-2) gene,
              complete sequence
          Length = 276326

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 283    cttcgaagcattatttcctt 302
              ||||||||||||||||||||
Sbjct: 205882 cttcgaagcattatttcctt 205901

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>ref|XM_568974.1| Cryptococcus neoformans var. neoformans JEC21 aerobic
           respiration-related protein (CNB04840) partial mRNA
          Length = 891

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 273 atcttttgctcttcgaagca 292
           ||||||||||||||||||||
Sbjct: 674 atcttttgctcttcgaagca 655

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>ref|XM_761237.1| Theileria parva strain Muguga chromosome 1 RNA polymerase large
            subunit (TP01_0809) partial mRNA
          Length = 5991

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 311  actgattgaaagacgttcaaaggt 334
            ||||||||||||| ||||||||||
Sbjct: 3135 actgattgaaagatgttcaaaggt 3158

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>emb|AL590452.12| Human DNA sequence from clone RP11-326G21 on chromosome 1 Contains the 5'
              end of the PDE4DIP gene for phosphodiesterase 4D
              interacting protein (myomegalin) and a CpG island, complete
              sequence
          Length = 156813

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 291    cattatttccttctgtcagc 310
              ||||||||||||||||||||
Sbjct: 115296 cattatttccttctgtcagc 115277

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>emb|AL589823.10| Human DNA sequence from clone RP11-341A22 on chromosome 9 Contains a
              pseudogene similar to part of NADH dehydrogenase 5 (MTND5)
              and the 3' end of a novel gene, complete sequence
          Length = 184470

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     aacatttctacaaatatttg 47
              ||||||||||||||||||||
Sbjct: 126331 aacatttctacaaatatttg 126312

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>emb|AL353802.14| Human DNA sequence from clone RP4-662P1 on chromosome 1p31.3-32.3
              Contains part of the gene for InaD-like protein (INADL),
              complete sequence
          Length = 143226

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    atgatttctttaaccatttc 132
              ||||||||||||||||||||
Sbjct: 121936 atgatttctttaaccatttc 121955

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>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete
               sequence
          Length = 1632307

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 273     atcttttgctcttcgaagca 292
               ||||||||||||||||||||
Sbjct: 1378632 atcttttgctcttcgaagca 1378651

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>gb|AC183687.3| Pan troglodytes BAC clone CH251-25N14 from chromosome 1, complete
             sequence
          Length = 192054

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   cattatttccttctgtcagc 310
             ||||||||||||||||||||
Sbjct: 53535 cattatttccttctgtcagc 53516

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>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome
          Length = 2685015

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 113    atgatttctttaaccatttctttt 136
              ||||||||||||| ||||||||||
Sbjct: 128336 atgatttctttaaacatttctttt 128359

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>gb|AC022489.7| Homo sapiens BAC clone RP11-671P3 from 4, complete sequence
          Length = 195923

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     ttaattggaccagcacagtt 80
              ||||||||||||||||||||
Sbjct: 150444 ttaattggaccagcacagtt 150425

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>gb|AC008357.8| Drosophila melanogaster, chromosome 3R, region 86A-86A, BAC clone
             BACR03L12, complete sequence
          Length = 190672

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    atcaacatcagcattaattg 67
             ||||||||||||||||||||
Sbjct: 21966 atcaacatcagcattaattg 21947

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 156      aaacttcactcttaagcata 175
                ||||||||||||||||||||
Sbjct: 10701925 aaacttcactcttaagcata 10701944

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>gb|AC078952.20| Homo sapiens 3 BAC RP11-764E15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 169103

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 262    cagcaactcacatcttttgctctt 285
              ||||||||| ||||||||||||||
Sbjct: 135710 cagcaactctcatcttttgctctt 135687

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>gb|AC175464.1| Mus musculus BAC clone RP23-129E4 from chromosome 16, complete sequence
          Length = 224605

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 34     tctacaaatatttgatcaac 53
              ||||||||||||||||||||
Sbjct: 194327 tctacaaatatttgatcaac 194308

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>dbj|BS000008.1| Pan troglodytes chromosome 22 clone:RP43-011E05, map 22, complete
             sequences
          Length = 104995

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   cagtaagcaaacttcactct 167
             ||||||||||||||||||||
Sbjct: 37769 cagtaagcaaacttcactct 37788

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>gb|AY555142.1| Zea mays BAC clone c573F08, complete sequence
          Length = 181627

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   cttcgaagcattatttcctt 302
             ||||||||||||||||||||
Sbjct: 75484 cttcgaagcattatttcctt 75465

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>emb|BX681417.10| Zebrafish DNA sequence from clone DKEY-161L11 in linkage group 2,
             complete sequence
          Length = 233760

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 294   tatttccttctgtcagcact 313
             ||||||||||||||||||||
Sbjct: 77619 tatttccttctgtcagcact 77638

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>emb|BX897693.12| Zebrafish DNA sequence from clone CH211-147C1 in linkage group 20,
             complete sequence
          Length = 173818

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 296   tttccttctgtcagcactga 315
             ||||||||||||||||||||
Sbjct: 99711 tttccttctgtcagcactga 99692

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>emb|BX927258.8| Zebrafish DNA sequence from clone CH211-279M15 in linkage group 20,
              complete sequence
          Length = 146407

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    agcatcatctgtagcacaga 199
              ||||||||||||||||||||
Sbjct: 117044 agcatcatctgtagcacaga 117063

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>emb|BX119973.7| Zebrafish DNA sequence from clone RP71-77D7 in linkage group 13,
             complete sequence
          Length = 182073

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   atttctttaaccatttcttt 135
             ||||||||||||||||||||
Sbjct: 17127 atttctttaaccatttcttt 17108

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>gb|AE003686.4| Drosophila melanogaster chromosome 3R, section 24 of 118 of the complete
              sequence
          Length = 223505

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     atcaacatcagcattaattg 67
              ||||||||||||||||||||
Sbjct: 126302 atcaacatcagcattaattg 126283

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 156      aaacttcactcttaagcata 175
                ||||||||||||||||||||
Sbjct: 10701624 aaacttcactcttaagcata 10701643

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>emb|AL831795.4|CNS08CA8 Oryza sativa chromosome 12, . BAC OSJNBb0085N21 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 135105

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   aaacttcactcttaagcata 175
             ||||||||||||||||||||
Sbjct: 66821 aaacttcactcttaagcata 66840

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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 341     agtgggatcatcatggacat 360
               ||||||||||||||||||||
Sbjct: 6762828 agtgggatcatcatggacat 6762809

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>emb|AL645586.9| Mouse DNA sequence from clone RP23-302O5 on chromosome X, complete
             sequence
          Length = 202500

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    atttctacaaatatttgatc 50
             ||||||||||||||||||||
Sbjct: 72414 atttctacaaatatttgatc 72433


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,791,325
Number of Sequences: 3902068
Number of extensions: 4791325
Number of successful extensions: 103149
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102923
Number of HSP's gapped (non-prelim): 224
length of query: 457
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 435
effective length of database: 17,147,199,772
effective search space: 7459031900820
effective search space used: 7459031900820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result