ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet72e07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK098990.1| Oryza sativa (japonica cultivar-group) cDNA clon... 180 3e-42
2dbj|AK065313.1| Oryza sativa (japonica cultivar-group) cDNA clon... 180 3e-42
3dbj|AK104689.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 7e-40
4gb|AY112340.1| Zea mays CL23674_1 mRNA sequence 172 7e-40
5gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome... 153 6e-34
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 153 6e-34
7gb|BT016920.1| Zea mays clone E04912701C01.c mRNA sequence 54 4e-04
8dbj|AP006715.1| Porphyra yezoensis chloroplast DNA, complete genome 46 0.10
9emb|AL845436.7| Mouse DNA sequence from clone RP23-299N13 on chr... 44 0.40
10emb|CR788310.10| Zebrafish DNA sequence from clone DKEY-74F15 in... 42 1.6
11gb|AF125222.1| Antheraea yamamai mariner transposon Ay1.1 transp... 42 1.6
12gb|AF125219.1| Antheraea mylitta mariner transposon Anm1.1 trans... 42 1.6
13gb|AC139854.21| Medicago truncatula clone mth2-16e16, complete s... 42 1.6
14gb|AC150442.2| Medicago truncatula chromosome 7 BAC clone mth2-2... 42 1.6
15gb|AC012653.8|AC012653 Homo sapiens chromosome 15 clone RP11-86K... 42 1.6
16gb|DQ322171.1| Homo sapiens aldehyde dehydrogenase 1 family, mem... 42 1.6
17ref|XM_747725.1| Aspergillus fumigatus Af293 aminotransferase (A... 40 6.3
18gb|AC117187.3| Mus musculus BAC clone RP23-41M4 from 1, complete... 40 6.3
19gb|AC144431.11| Medicago truncatula clone mth2-21i14, complete s... 40 6.3
20gb|BC100571.1| Mus musculus cDNA clone IMAGE:6435376 40 6.3
21emb|BX649607.1| Aspergillus fumigatus BAC pilot project supercon... 40 6.3
22dbj|AK085028.1| Mus musculus 13 days embryo lung cDNA, RIKEN ful... 40 6.3
23gb|AC097525.3| Homo sapiens BAC clone RP11-627E8 from 2, complet... 40 6.3
24gb|AC006994.4| Homo sapiens BAC clone RP11-396J8 from 2, complet... 40 6.3
25emb|CR955007.2| Medicago truncatula chromosome 5 clone mte1-58b2... 40 6.3
26emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 40 6.3
27emb|AL671426.6| Mouse DNA sequence from clone RP23-107F15 on chr... 40 6.3 
>dbj|AK098990.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094L23, full
            insert sequence
          Length = 1429

 Score =  180 bits (91), Expect = 3e-42
 Identities = 134/147 (91%), Gaps = 1/147 (0%)
 Strand = Plus / Minus

                                                                        
Query: 319  tctgcgccatagtcgagcatttcttttatgtttagcttgattgaaggtcccattgatgag 378
            |||| ||||||||| ||||||||||| ||||||| |||||||||||| ||||||||||||
Sbjct: 1123 tctgagccatagtcaagcatttctttgatgtttaacttgattgaaggccccattgatgag 1064

                                                                        
Query: 379  catacatatgccgttttccagtatatcccttttgcaccagatggcttgttcctctcaata 438
            ||||  ||||||||||||||||||||||| |||||||||||||| |||||||| || | |
Sbjct: 1063 cataagtatgccgttttccagtatatcccctttgcaccagatggtttgttcctttcgaca 1004

                                       
Query: 439  gagcgaac-acagccatgaagtttgca 464
            |||||||| ||||||||||||||||||
Sbjct: 1003 gagcgaacaacagccatgaagtttgca 977
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>dbj|AK065313.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002O22, full
            insert sequence
          Length = 1455

 Score =  180 bits (91), Expect = 3e-42
 Identities = 134/147 (91%), Gaps = 1/147 (0%)
 Strand = Plus / Minus

                                                                        
Query: 319  tctgcgccatagtcgagcatttcttttatgtttagcttgattgaaggtcccattgatgag 378
            |||| ||||||||| ||||||||||| ||||||| |||||||||||| ||||||||||||
Sbjct: 1132 tctgagccatagtcaagcatttctttgatgtttaacttgattgaaggccccattgatgag 1073

                                                                        
Query: 379  catacatatgccgttttccagtatatcccttttgcaccagatggcttgttcctctcaata 438
            ||||  ||||||||||||||||||||||| |||||||||||||| |||||||| || | |
Sbjct: 1072 cataagtatgccgttttccagtatatcccctttgcaccagatggtttgttcctttcgaca 1013

                                       
Query: 439  gagcgaac-acagccatgaagtttgca 464
            |||||||| ||||||||||||||||||
Sbjct: 1012 gagcgaacaacagccatgaagtttgca 986



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 6    aagctcaaggatgactattgacataatgatgaacattacaacaaa 50
            |||||||||||||||||| |||| |||  ||| ||||||||||||
Sbjct: 1450 aagctcaaggatgactatggacaaaatattgatcattacaacaaa 1406
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>dbj|AK104689.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-F09, full
            insert sequence
          Length = 1415

 Score =  172 bits (87), Expect = 7e-40
 Identities = 133/147 (90%), Gaps = 1/147 (0%)
 Strand = Plus / Minus

                                                                        
Query: 319  tctgcgccatagtcgagcatttcttttatgtttagcttgattgaaggtcccattgatgag 378
            |||| ||||||||| ||||||||||| ||||||| |||||||||||| ||||||||||||
Sbjct: 1128 tctgagccatagtcaagcatttctttgatgtttaacttgattgaaggccccattgatgag 1069

                                                                        
Query: 379  catacatatgccgttttccagtatatcccttttgcaccagatggcttgttcctctcaata 438
            ||||  ||||||||||||||||||| ||| |||||||||||||| |||||||| || | |
Sbjct: 1068 cataagtatgccgttttccagtataccccctttgcaccagatggtttgttcctttcgaca 1009

                                       
Query: 439  gagcgaac-acagccatgaagtttgca 464
            |||||||| ||||||||||||||||||
Sbjct: 1008 gagcgaacaacagccatgaagtttgca 982
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>gb|AY112340.1| Zea mays CL23674_1 mRNA sequence
          Length = 1344

 Score =  172 bits (87), Expect = 7e-40
 Identities = 163/187 (87%), Gaps = 1/187 (0%)
 Strand = Plus / Plus

                                                                       
Query: 279 tgacttaattggtgctcgtggtgacatctagttagacgaatctgcgccatagtcgagcat 338
           |||||||| ||||||  ||||| ||||||||| ||| || ||    |||||||| |||||
Sbjct: 248 tgacttaactggtgcctgtggtcacatctagtcagatgattccaaaccatagtcaagcat 307

                                                                       
Query: 339 ttcttttatgtttagcttgattgaaggtcccattgatgagcatacatatgccgttttcca 398
           ||||||||||||||||||||| ||||||||||| |||||||| |  || |||||||||||
Sbjct: 308 ttcttttatgtttagcttgatagaaggtcccatggatgagcacaagtacgccgttttcca 367

                                                                       
Query: 399 gtatatcccttttgcaccagatggcttgttcctctcaatagagcgaac-acagccatgaa 457
           ||||||||| || ||||||||||||||||||||||||  ||||||||| |||| ||||||
Sbjct: 368 gtatatccccttagcaccagatggcttgttcctctcagcagagcgaacaacagacatgaa 427

                  
Query: 458 gtttgca 464
           |||||||
Sbjct: 428 gtttgca 434
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>gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0073E05,
              complete sequence
          Length = 178013

 Score =  153 bits (77), Expect = 6e-34
 Identities = 104/113 (92%)
 Strand = Plus / Minus

                                                                          
Query: 319    tctgcgccatagtcgagcatttcttttatgtttagcttgattgaaggtcccattgatgag 378
              |||| ||||||||| ||||||||||| ||||||| |||||||||||| ||||||||||||
Sbjct: 122188 tctgagccatagtcaagcatttctttgatgtttaacttgattgaaggccccattgatgag 122129

                                                                   
Query: 379    catacatatgccgttttccagtatatcccttttgcaccagatggcttgttcct 431
              ||||  ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 122128 cataagtatgccgttttccagtatatcccctttgcaccagatggtttgttcct 122076



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                           
Query: 6      aagctcaaggatgactattgacataatgatgaacattacaacaaa 50
              |||||||||||||||||| |||| |||  ||| ||||||||||||
Sbjct: 122506 aagctcaaggatgactatggacaaaatattgatcattacaacaaa 122462
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  153 bits (77), Expect = 6e-34
 Identities = 104/113 (92%)
 Strand = Plus / Minus

                                                                            
Query: 319      tctgcgccatagtcgagcatttcttttatgtttagcttgattgaaggtcccattgatgag 378
                |||| ||||||||| ||||||||||| ||||||| |||||||||||| ||||||||||||
Sbjct: 18649073 tctgagccatagtcaagcatttctttgatgtttaacttgattgaaggccccattgatgag 18649014

                                                                     
Query: 379      catacatatgccgttttccagtatatcccttttgcaccagatggcttgttcct 431
                ||||  ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 18649013 cataagtatgccgttttccagtatatcccctttgcaccagatggtttgttcct 18648961



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                             
Query: 6        aagctcaaggatgactattgacataatgatgaacattacaacaaa 50
                |||||||||||||||||| |||| |||  ||| ||||||||||||
Sbjct: 18649391 aagctcaaggatgactatggacaaaatattgatcattacaacaaa 18649347
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>gb|BT016920.1| Zea mays clone E04912701C01.c mRNA sequence
          Length = 380

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 47/51 (92%), Gaps = 2/51 (3%)
 Strand = Plus / Plus

                                                              
Query: 1   ggctgaagctcaaggatgactattgacataatgatg-aacattacaacaaa 50
           |||| ||||||||||||||||||||||| ||| ||| ||||||||||||||
Sbjct: 55  ggcttaagctcaaggatgactattgacaaaat-atgaaacattacaacaaa 104
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>dbj|AP006715.1| Porphyra yezoensis chloroplast DNA, complete genome
          Length = 191952

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                             
Query: 391    gttttccagtatatcccttttgcaccagatggcttgttcctctcaat 437
              |||||||||||  |||||||||| ||||| |||||||| || |||||
Sbjct: 130412 gttttccagtacttcccttttgctccagaaggcttgtttctatcaat 130366
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>emb|AL845436.7| Mouse DNA sequence from clone RP23-299N13 on chromosome 2, complete
             sequence
          Length = 126095

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 213   tttctcagtgtatttatcacaaggga 238
             |||||||| |||||||||||||||||
Sbjct: 40560 tttctcagagtatttatcacaaggga 40535
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>emb|CR788310.10| Zebrafish DNA sequence from clone DKEY-74F15 in linkage group 2,
            complete sequence
          Length = 244700

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 210  gtgtttctcagtgtatttatcacaa 234
            |||||||||||||||||||| ||||
Sbjct: 6464 gtgtttctcagtgtatttattacaa 6440
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>gb|AF125222.1| Antheraea yamamai mariner transposon Ay1.1 transposase pseudogene,
           partial sequence
          Length = 450

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 126 agggcattgtttaagtgctga 146
           |||||||||||||||||||||
Sbjct: 175 agggcattgtttaagtgctga 155
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>gb|AF125219.1| Antheraea mylitta mariner transposon Anm1.1 transposase pseudogene,
           partial sequence
          Length = 450

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 126 agggcattgtttaagtgctga 146
           |||||||||||||||||||||
Sbjct: 175 agggcattgtttaagtgctga 155
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>gb|AC139854.21| Medicago truncatula clone mth2-16e16, complete sequence
          Length = 117864

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 334    agcatttcttttatgtttagc 354
              |||||||||||||||||||||
Sbjct: 114918 agcatttcttttatgtttagc 114898
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>gb|AC150442.2| Medicago truncatula chromosome 7 BAC clone mth2-2o12, complete sequence
          Length = 89504

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 334   agcatttcttttatgtttagc 354
             |||||||||||||||||||||
Sbjct: 14679 agcatttcttttatgtttagc 14659
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>gb|AC012653.8|AC012653 Homo sapiens chromosome 15 clone RP11-86K22 map 15q21.3, complete
              sequence
          Length = 190420

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 32     tgatgaacattacaacaaata 52
              |||||||||||||||||||||
Sbjct: 162736 tgatgaacattacaacaaata 162756
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>gb|DQ322171.1| Homo sapiens aldehyde dehydrogenase 1 family, member A2 (ALDH1A2) gene,
             complete cds
          Length = 116285

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 32    tgatgaacattacaacaaata 52
             |||||||||||||||||||||
Sbjct: 78465 tgatgaacattacaacaaata 78445
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>ref|XM_747725.1| Aspergillus fumigatus Af293 aminotransferase (Afu1g14490) partial
           mRNA
          Length = 1341

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 361 gaaggtcccattgatgagca 380
           ||||||||||||||||||||
Sbjct: 951 gaaggtcccattgatgagca 932
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>gb|AC117187.3| Mus musculus BAC clone RP23-41M4 from 1, complete sequence
          Length = 138404

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    attgacataatgatgaacat 41
             ||||||||||||||||||||
Sbjct: 44093 attgacataatgatgaacat 44112
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>gb|AC144431.11| Medicago truncatula clone mth2-21i14, complete sequence
          Length = 154482

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 337  atttcttttatgtttagctt 356
            ||||||||||||||||||||
Sbjct: 9608 atttcttttatgtttagctt 9627
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>gb|BC100571.1| Mus musculus cDNA clone IMAGE:6435376
          Length = 3338

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 246 tcaagcctgtgaaattggta 265
           ||||||||||||||||||||
Sbjct: 936 tcaagcctgtgaaattggta 917
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>emb|BX649607.1| Aspergillus fumigatus BAC pilot project supercontig; segment 3/3
          Length = 227448

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 361    gaaggtcccattgatgagca 380
              ||||||||||||||||||||
Sbjct: 219538 gaaggtcccattgatgagca 219557
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>dbj|AK085028.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched
            library, clone:D430026I16 product:hypothetical protein,
            full insert sequence
          Length = 3010

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 246  tcaagcctgtgaaattggta 265
            ||||||||||||||||||||
Sbjct: 2392 tcaagcctgtgaaattggta 2411
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>gb|AC097525.3| Homo sapiens BAC clone RP11-627E8 from 2, complete sequence
          Length = 55514

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 58  caaaaggacatctataagtg 77
           ||||||||||||||||||||
Sbjct: 297 caaaaggacatctataagtg 316
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>gb|AC006994.4| Homo sapiens BAC clone RP11-396J8 from 2, complete sequence
          Length = 192104

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     caaaaggacatctataagtg 77
              ||||||||||||||||||||
Sbjct: 190400 caaaaggacatctataagtg 190419
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>emb|CR955007.2| Medicago truncatula chromosome 5 clone mte1-58b20, COMPLETE SEQUENCE
          Length = 108616

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 337   atttcttttatgtttagctt 356
             ||||||||||||||||||||
Sbjct: 99538 atttcttttatgtttagctt 99557
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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 208     tcgtgtttctcagtgtattt 227
               ||||||||||||||||||||
Sbjct: 2362193 tcgtgtttctcagtgtattt 2362212
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>emb|AL671426.6| Mouse DNA sequence from clone RP23-107F15 on chromosome X, complete
             sequence
          Length = 123745

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   tcaagcctgtgaaattggta 265
             ||||||||||||||||||||
Sbjct: 40881 tcaagcctgtgaaattggta 40862


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,715,532
Number of Sequences: 3902068
Number of extensions: 3715532
Number of successful extensions: 63679
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63594
Number of HSP's gapped (non-prelim): 80
length of query: 465
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 443
effective length of database: 17,147,199,772
effective search space: 7596209498996
effective search space used: 7596209498996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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