ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet72d10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT017836.1| Zea mays clone EL01N0509F09.c mRNA sequence Length = 1379 Score = 161 bits (81), Expect = 2e-36 Identities = 209/251 (83%), Gaps = 3/251 (1%) Strand = Plus / Minus Query: 180 attacacatgtacagttaatctagtaaagggctcccctctttggcaagaataaacacgcc 239 |||||| || |||| || |||||| ||||||||||||||||||||||||||||||| ||| Sbjct: 1193 attacagatttacaattgatctagcaaagggctcccctctttggcaagaataaacaagcc 1134 Query: 240 acccccatcaccttttgatatcctcaagtctttgtcgaggtaggttgtcaaaagccacga 299 || ||| ||| | || ||||| ||||||||||| |||||||| ||||| ||||| || Sbjct: 1133 tcc---atcgcctctcgagatccttaagtctttgtccaggtaggtagtcaagagccagga 1077 Query: 300 cttggccttgttgtcgccgggaatcggtacctttaaaggtggctgcccagagatggaccc 359 || |||||| ||||||||| |||||||| | |||||||||||||| |||||||| Sbjct: 1076 tcgagctctgttgttgccgggaattggtaccttgaggggtggctgcccagaaatggaccc 1017 Query: 360 tgcaatgctagcaaatgcttgctgcaaagactccagcagctgcttaacaggccccaggct 419 |||||||||||||||||||||||||| | | ||| ||||| || ||||||||||| Sbjct: 1016 agcaatgctagcaaatgcttgctgcaatggattcagtgcctgctggactggccccaggct 957 Query: 420 gatcttctgcc 430 ||||||||||| Sbjct: 956 gatcttctgcc 946
>ref|NM_197874.1| Oryza sativa (japonica cultivar-group) putative plastid-lipid associated protein (OSJNBa0027L23.3), mRNA Length = 1180 Score = 85.7 bits (43), Expect = 1e-13 Identities = 186/233 (79%), Gaps = 3/233 (1%) Strand = Plus / Minus Query: 198 atctagtaaagggctcccctctttggcaagaataaacacgccacccccatcaccttttga 257 |||||||| |||||| ||||||||| ||||||| || | ||| ||||||||| | || Sbjct: 1129 atctagtagagggctaccctctttgacaagaatgaagag---acctccatcacctctgga 1073 Query: 258 tatcctcaagtctttgtcgaggtaggttgtcaaaagccacgacttggccttgttgtcgcc 317 ||||| | ||| ||||| |||||||| |||| ||||| ||| |||| |||||| ||| Sbjct: 1072 gatcctgaggtccttgtctaggtaggtcgtcagcagccaagaccgggccctgttgttgcc 1013 Query: 318 gggaatcggtacctttaaaggtggctgcccagagatggaccctgcaatgctagcaaatgc 377 || || |||| ||| | |||||||||||||| ||||| |||||||| || ||||| || Sbjct: 1012 agggatgggtaacttgaggggtggctgcccagaaatggatcctgcaatacttgcaaaggc 953 Query: 378 ttgctgcaaagactccagcagctgcttaacaggccccaggctgatcttctgcc 430 |||||||| || | ||||| ||||| || || |||| |||||||||||||| Sbjct: 952 ttgctgcagagggttcagcacctgctggactgggcccaagctgatcttctgcc 900
>gb|AC018929.12| Oryza sativa chromosome 10 BAC OSJNBa0027L23 genomic sequence, complete sequence Length = 143961 Score = 85.7 bits (43), Expect = 1e-13 Identities = 186/233 (79%), Gaps = 3/233 (1%) Strand = Plus / Minus Query: 198 atctagtaaagggctcccctctttggcaagaataaacacgccacccccatcaccttttga 257 |||||||| |||||| ||||||||| ||||||| || | ||| ||||||||| | || Sbjct: 54833 atctagtagagggctaccctctttgacaagaatgaagag---acctccatcacctctgga 54777 Query: 258 tatcctcaagtctttgtcgaggtaggttgtcaaaagccacgacttggccttgttgtcgcc 317 ||||| | ||| ||||| |||||||| |||| ||||| ||| |||| |||||| ||| Sbjct: 54776 gatcctgaggtccttgtctaggtaggtcgtcagcagccaagaccgggccctgttgttgcc 54717 Query: 318 gggaatcggtacctttaaaggtggctgcccagagatggaccctgcaatgctagcaaatgc 377 || || |||| ||| | |||||||||||||| ||||| |||||||| || ||||| || Sbjct: 54716 agggatgggtaacttgaggggtggctgcccagaaatggatcctgcaatacttgcaaaggc 54657 Query: 378 ttgctgcaaagactccagcagctgcttaacaggccccaggctgatcttctgcc 430 |||||||| || | ||||| ||||| || || |||| |||||||||||||| Sbjct: 54656 ttgctgcagagggttcagcacctgctggactgggcccaagctgatcttctgcc 54604
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 85.7 bits (43), Expect = 1e-13 Identities = 186/233 (79%), Gaps = 3/233 (1%) Strand = Plus / Minus Query: 198 atctagtaaagggctcccctctttggcaagaataaacacgccacccccatcaccttttga 257 |||||||| |||||| ||||||||| ||||||| || | ||| ||||||||| | || Sbjct: 22402810 atctagtagagggctaccctctttgacaagaatgaagag---acctccatcacctctgga 22402754 Query: 258 tatcctcaagtctttgtcgaggtaggttgtcaaaagccacgacttggccttgttgtcgcc 317 ||||| | ||| ||||| |||||||| |||| ||||| ||| |||| |||||| ||| Sbjct: 22402753 gatcctgaggtccttgtctaggtaggtcgtcagcagccaagaccgggccctgttgttgcc 22402694 Query: 318 gggaatcggtacctttaaaggtggctgcccagagatggaccctgcaatgctagcaaatgc 377 || || |||| ||| | |||||||||||||| ||||| |||||||| || ||||| || Sbjct: 22402693 agggatgggtaacttgaggggtggctgcccagaaatggatcctgcaatacttgcaaaggc 22402634 Query: 378 ttgctgcaaagactccagcagctgcttaacaggccccaggctgatcttctgcc 430 |||||||| || | ||||| ||||| || || |||| |||||||||||||| Sbjct: 22402633 ttgctgcagagggttcagcacctgctggactgggcccaagctgatcttctgcc 22402581
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 85.7 bits (43), Expect = 1e-13 Identities = 186/233 (79%), Gaps = 3/233 (1%) Strand = Plus / Minus Query: 198 atctagtaaagggctcccctctttggcaagaataaacacgccacccccatcaccttttga 257 |||||||| |||||| ||||||||| ||||||| || | ||| ||||||||| | || Sbjct: 22414878 atctagtagagggctaccctctttgacaagaatgaagag---acctccatcacctctgga 22414822 Query: 258 tatcctcaagtctttgtcgaggtaggttgtcaaaagccacgacttggccttgttgtcgcc 317 ||||| | ||| ||||| |||||||| |||| ||||| ||| |||| |||||| ||| Sbjct: 22414821 gatcctgaggtccttgtctaggtaggtcgtcagcagccaagaccgggccctgttgttgcc 22414762 Query: 318 gggaatcggtacctttaaaggtggctgcccagagatggaccctgcaatgctagcaaatgc 377 || || |||| ||| | |||||||||||||| ||||| |||||||| || ||||| || Sbjct: 22414761 agggatgggtaacttgaggggtggctgcccagaaatggatcctgcaatacttgcaaaggc 22414702 Query: 378 ttgctgcaaagactccagcagctgcttaacaggccccaggctgatcttctgcc 430 |||||||| || | ||||| ||||| || || |||| |||||||||||||| Sbjct: 22414701 ttgctgcagagggttcagcacctgctggactgggcccaagctgatcttctgcc 22414649
>emb|AL445209.4| Human DNA sequence from clone RP11-52L5 on chromosome 13 Contains a transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) (TCEB1) pseudogene, a novel gene, the POU4F1 gene for POU domain, class 4, transcription factor 1 (BRN3A, RDC-1), the 3' end a novel gene (contains FLJ13449, possible ortholog of mouse 2810449K13Rik protein) and 3 CpG islands, complete sequence Length = 157302 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 362 caatgctagcaaatgcttgctgc 384 ||||||||||||||||||||||| Sbjct: 75315 caatgctagcaaatgcttgctgc 75293
>emb|AL935128.13| Zebrafish DNA sequence from clone CH211-183D5 in linkage group 7, complete sequence Length = 152770 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 ttaccaaagagcagaaagcgt 45 ||||||||||||||||||||| Sbjct: 94778 ttaccaaagagcagaaagcgt 94758
>gb|AC110607.7| Homo sapiens chromosome 15, clone CTD-2632K10, complete sequence Length = 160452 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 ttaacaggccccaggctgat 422 |||||||||||||||||||| Sbjct: 142049 ttaacaggccccaggctgat 142068
>gb|AC046168.12| Homo sapiens chromosome 15, clone RP11-307C19, complete sequence Length = 180484 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 ttaacaggccccaggctgat 422 |||||||||||||||||||| Sbjct: 135867 ttaacaggccccaggctgat 135848
>gb|AC087189.3| Homo sapiens chromosome 16 clone RP11-43L5, complete sequence Length = 184877 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 aattgtgtatcaaaggggga 126 |||||||||||||||||||| Sbjct: 161427 aattgtgtatcaaaggggga 161408
>gb|AC010984.7| Homo sapiens BAC clone RP11-510C1 from 2, complete sequence Length = 191540 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 aaggtggctgcccagagatg 354 |||||||||||||||||||| Sbjct: 148318 aaggtggctgcccagagatg 148299
>gb|AC133785.2| Homo sapiens BAC clone RP13-586I5 from 2, complete sequence Length = 73720 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 aaggtggctgcccagagatg 354 |||||||||||||||||||| Sbjct: 5968 aaggtggctgcccagagatg 5949
>gb|AC007461.8|AC007461 Homo sapiens chromosome 17, clone 84_E_24, complete sequence Length = 180385 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 ccagcagctgcttaacaggc 411 |||||||||||||||||||| Sbjct: 131523 ccagcagctgcttaacaggc 131504 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,039,394 Number of Sequences: 3902068 Number of extensions: 4039394 Number of successful extensions: 78184 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78144 Number of HSP's gapped (non-prelim): 39 length of query: 430 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 408 effective length of database: 17,147,199,772 effective search space: 6996057506976 effective search space used: 6996057506976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
