ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet72d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4... 34 0.12
2MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1 31 1.0
3EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen... 31 1.0
4EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2... 31 1.4
5EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) ... 31 1.4
6YNL6_YEAST (P53924) RING finger protein YNL116W 28 8.8
7SUR2_CAEEL (Q10669) Protein sur-2 28 8.8

>EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4) (At-EXPB4)|
           (Ath-ExpBeta-1.1)
          Length = 259

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = -3

Query: 418 NVIPANWRPNTDYRSFVQF 362
           NVIPANW+P+  YRS V F
Sbjct: 241 NVIPANWKPDESYRSIVNF 259



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>MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1|
          Length = 246

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = -3

Query: 421 NNVIPANWRPNTDYRSFVQF 362
           ++VIPANW+P+T Y S +QF
Sbjct: 225 DDVIPANWKPDTVYTSKLQF 244



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>EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen Zea m 1) (Zea|
           m I)
          Length = 269

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = -3

Query: 418 NVIPANWRPNTDYRSFVQF 362
           +VIPANWRP+  Y S VQF
Sbjct: 250 DVIPANWRPDAVYTSNVQF 268



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>EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2) (At-EXPB2)|
           (Ath-ExpBeta-1.4)
          Length = 273

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 421 NNVIPANWRPNTDYRSFVQF 362
           +NVIPANW+P   Y+S V F
Sbjct: 254 SNVIPANWQPGAIYKSNVNF 273



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>EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) (Zea m I)|
           (Fragment)
          Length = 191

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -3

Query: 418 NVIPANWRPNTDYRSFVQF 362
           ++IPANWRP+  Y S VQF
Sbjct: 172 DIIPANWRPDAVYTSNVQF 190



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>YNL6_YEAST (P53924) RING finger protein YNL116W|
          Length = 522

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 108 CALPPTDSVYGVPCI-TWHYLCVTKIPNQSY 19
           C + P  +++  PC  +WH+ CV ++   SY
Sbjct: 438 CKIKPCQAIFISPCAHSWHFRCVRRLVMLSY 468



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>SUR2_CAEEL (Q10669) Protein sur-2|
          Length = 1587

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 14/55 (25%)
 Frame = -2

Query: 422  QQCHPGQLEAQHRLPLLRPVQLIGPDRPMS---------GHVRL-----HHARMH 300
            Q  HP Q + QH++P +   Q +GP  P +         GHV +     HH + H
Sbjct: 1473 QSNHPTQQQLQHQIPNMSMHQQMGPQYPGAVFHHPSGPVGHVPMQYGMGHHMQQH 1527


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,275,093
Number of Sequences: 219361
Number of extensions: 1163690
Number of successful extensions: 3312
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3311
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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