ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet71h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009027.1| Triticum aestivum clone wdk3c.pk021.e13:fis, full... 315 7e-83
2gb|AY831392.1| Oryza sativa (indica cultivar-group) BTH-induced ... 56 1e-04
3gb|DQ417199.1| Oryza sativa (japonica cultivar-group) putative E... 56 1e-04
4gb|AF364176.1| Oryza sativa putative EREBP-type transcription fa... 56 1e-04
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
6dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
7dbj|AK111690.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
8dbj|AK104576.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
9dbj|AK104723.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
10emb|AL845492.10| Mouse DNA sequence from clone RP23-222P7 on chr... 50 0.007
11gb|AF215937.1|AF215937 Homo sapiens 3pv2 and 5p152 genes, comple... 46 0.10
12emb|AL355094.3|CNS05TCD Human chromosome 14 DNA sequence BAC R-6... 46 0.10
13emb|AL161756.6|CNS01RHJ Human chromosome 14 DNA sequence BAC R-7... 46 0.10
14gb|AF061054.1|AF061054 Homo sapiens estrogen receptor beta 4 spl... 46 0.10
15gb|AC158310.3| Mus musculus chromosome 5, clone RP23-106N8, comp... 44 0.40
16gb|AC105987.21| Mus musculus chromosome 5, clone RP24-446I1, com... 44 0.40
17gb|AY105702.1| Zea mays PCO125609 mRNA sequence 44 0.40
18gb|AC126424.12| Mus musculus chromosome 17, clone RP23-19K10, co... 42 1.6
19gb|AC011944.12| Homo sapiens chromosome 15, clone RP11-16K12, co... 42 1.6
20gb|AC087890.18| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, ... 42 1.6
21gb|AC018457.14| Homo sapiens 3 BAC RP11-198G24 (Roswell Park Can... 42 1.6
22emb|BX950219.10| Mouse DNA sequence from clone RP23-303E24 on ch... 42 1.6
23emb|CT033750.18| Mouse DNA sequence from clone RP23-263M5 on chr... 42 1.6
24gb|AC079680.34| Mus musculus strain C57BL/6J chromosome 10 clone... 42 1.6
25gb|AC112965.10| Mus musculus chromosome 1, clone RP24-95N17, com... 40 6.3
26gb|AC114409.17| Mus musculus chromosome 5, clone RP23-148F6, com... 40 6.3
27emb|CT025848.6| Mouse DNA sequence from clone RP24-326K2 on chro... 40 6.3
28gb|AC123033.4| Mus musculus BAC clone RP24-482F14 from chromosom... 40 6.3
29gb|AC116371.5| Mus musculus chromosome 17, clone RP24-228A1, com... 40 6.3
30emb|AL022101.1|HS845O24 Human DNA sequence from clone RP5-845O24... 40 6.3
31emb|CR854856.5| Human DNA sequence from clone RP13-299H21 on chr... 40 6.3
32emb|CR854858.22| Human DNA sequence from clone RP13-177J6 on chr... 40 6.3 
>gb|BT009027.1| Triticum aestivum clone wdk3c.pk021.e13:fis, full insert mRNA
            sequence
          Length = 1612

 Score =  315 bits (159), Expect = 7e-83
 Identities = 289/329 (87%), Gaps = 15/329 (4%)
 Strand = Plus / Minus

                                                                        
Query: 80   tttattaaactccagcctccaacatgcacccaatcattatatagagacgacatacaacaa 139
            ||||||||||||||| |||||||||||||||||||||     |||| ||| |||||||||
Sbjct: 1554 tttattaaactccagtctccaacatgcacccaatcat-----agaggcgatatacaacaa 1500

                                                                        
Query: 140  cagaata----taaacacgaccatacggttcccactgctagcagcatacagtctttagca 195
            || ||||    |||||| ||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 1499 caaaatacttataaacatgac-atacggttcc-actgctagcagcatacagtctttagca 1442

                                                                        
Query: 196  taactatggtttcatccgctacagaacgtagcagaagccaccgatccttctttcatcttg 255
            || ||| ||||| |||||||||  | | || |||| || ||| |||||||    ||| ||
Sbjct: 1441 tagctagggtttgatccgctaccaagcataacagatgcaacctatccttc----atcctg 1386

                                                                        
Query: 256  gccacatgcaccaccaattcttcatcttgcccacatgcaagggacatttgtgctgtccgc 315
            |||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 1385 gccacatgcaccaccacttcttcatcttggccacatgcaagggacatttgtgctatccgc 1326

                                                                        
Query: 316  agaccacattgacaagaaccatcaataaccaccagctgccatgaacagctcatcgaggct 375
            |||||||| ||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct: 1325 agaccacactgacaagaaccatcaataaccaccagccgccatgaagagctcatcaaggct 1266

                                         
Query: 376  ccagagatccccactgcttgccccatcct 404
            |||||||||||||||||||||||| ||||
Sbjct: 1265 ccagagatccccactgcttgccccgtcct 1237



 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Minus

                                                                        
Query: 403  ctcattgtcaaaagcagggatgtcttgtgcaccatttccctgaggcagcacagctacgcc 462
            ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 1160 ctcatggtcaaaagcagggatgtcttgtgcaccatttccctgaggcagcacggctacacc 1101

                 
Query: 463  aaagt 467
            |||||
Sbjct: 1100 aaagt 1096
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>gb|AY831392.1| Oryza sativa (indica cultivar-group) BTH-induced ERF transcriptional
            factor 1 (BIERF1) mRNA, complete cds
          Length = 1613

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 345  caccagctgccatgaacagctcatcgaggctccaga 380
            ||||||||||||||| ||||||||| ||||||||||
Sbjct: 1211 caccagctgccatgagcagctcatcaaggctccaga 1176
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>gb|DQ417199.1| Oryza sativa (japonica cultivar-group) putative EREBP transcription
            factor (EREBP) mRNA, complete cds
          Length = 1445

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 345  caccagctgccatgaacagctcatcgaggctccaga 380
            ||||||||||||||| ||||||||| ||||||||||
Sbjct: 1188 caccagctgccatgagcagctcatcaaggctccaga 1153
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>gb|AF364176.1| Oryza sativa putative EREBP-type transcription factor mRNA, complete
            cds
          Length = 1584

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 345  caccagctgccatgaacagctcatcgaggctccaga 380
            ||||||||||||||| ||||||||| ||||||||||
Sbjct: 1262 caccagctgccatgagcagctcatcaaggctccaga 1227
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                    
Query: 345      caccagctgccatgaacagctcatcgaggctccaga 380
                ||||||||||||||| ||||||||| ||||||||||
Sbjct: 15907586 caccagctgccatgagcagctcatcaaggctccaga 15907551
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>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1081_G10
          Length = 107955

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 345   caccagctgccatgaacagctcatcgaggctccaga 380
             ||||||||||||||| ||||||||| ||||||||||
Sbjct: 70712 caccagctgccatgagcagctcatcaaggctccaga 70677
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>dbj|AK111690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008G03, full
            insert sequence
          Length = 1603

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 345  caccagctgccatgaacagctcatcgaggctccaga 380
            ||||||||||||||| ||||||||| ||||||||||
Sbjct: 1292 caccagctgccatgagcagctcatcaaggctccaga 1257
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>dbj|AK104576.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-A07, full
            insert sequence
          Length = 1596

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 345  caccagctgccatgaacagctcatcgaggctccaga 380
            ||||||||||||||| ||||||||| ||||||||||
Sbjct: 1286 caccagctgccatgagcagctcatcaaggctccaga 1251
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>dbj|AK104723.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B05, full
            insert sequence
          Length = 1596

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 345  caccagctgccatgaacagctcatcgaggctccaga 380
            ||||||||||||||| ||||||||| ||||||||||
Sbjct: 1286 caccagctgccatgagcagctcatcaaggctccaga 1251
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>emb|AL845492.10| Mouse DNA sequence from clone RP23-222P7 on chromosome 2, complete
              sequence
          Length = 225684

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 398    ccatcctcattgtcaaaagcaggga 422
              |||||||||||||||||||||||||
Sbjct: 204068 ccatcctcattgtcaaaagcaggga 204092
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>gb|AF215937.1|AF215937 Homo sapiens 3pv2 and 5p152 genes, complete cds, complete sequence
          Length = 143340

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 282   ttgcccacatgcaagggacattt 304
             |||||||||||||||||||||||
Sbjct: 58727 ttgcccacatgcaagggacattt 58749
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>emb|AL355094.3|CNS05TCD Human chromosome 14 DNA sequence BAC R-676P5 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 170273

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 282  ttgcccacatgcaagggacattt 304
            |||||||||||||||||||||||
Sbjct: 4156 ttgcccacatgcaagggacattt 4134
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>emb|AL161756.6|CNS01RHJ Human chromosome 14 DNA sequence BAC R-712C19 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176257

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 282    ttgcccacatgcaagggacattt 304
              |||||||||||||||||||||||
Sbjct: 148513 ttgcccacatgcaagggacattt 148491
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>gb|AF061054.1|AF061054 Homo sapiens estrogen receptor beta 4 splice variant mRNA, partial
           cds
          Length = 659

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 282 ttgcccacatgcaagggacattt 304
           |||||||||||||||||||||||
Sbjct: 262 ttgcccacatgcaagggacattt 240
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>gb|AC158310.3| Mus musculus chromosome 5, clone RP23-106N8, complete sequence
          Length = 218714

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 214    ctacagaacgtagcagaagcca 235
              ||||||||||||||||||||||
Sbjct: 119408 ctacagaacgtagcagaagcca 119429
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>gb|AC105987.21| Mus musculus chromosome 5, clone RP24-446I1, complete sequence
          Length = 192043

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 214    ctacagaacgtagcagaagcca 235
              ||||||||||||||||||||||
Sbjct: 145261 ctacagaacgtagcagaagcca 145240
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>gb|AY105702.1| Zea mays PCO125609 mRNA sequence
          Length = 1889

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 355  catgaacagctcatcgaggctccagagatccccactgcttgccccatcct 404
            ||||| |||||| ||||||||||||| ||||||   ||| ||||||||||
Sbjct: 1510 catgagcagctcgtcgaggctccagatatccccggcgctcgccccatcct 1461
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>gb|AC126424.12| Mus musculus chromosome 17, clone RP23-19K10, complete sequence
          Length = 182696

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 432   caccatttccctgaggcagca 452
             |||||||||||||||||||||
Sbjct: 19989 caccatttccctgaggcagca 19969
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>gb|AC011944.12| Homo sapiens chromosome 15, clone RP11-16K12, complete sequence
          Length = 166309

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 241  ccttctttcatcttggccaca 261
            |||||||||||||||||||||
Sbjct: 7431 ccttctttcatcttggccaca 7451
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>gb|AC087890.18| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, RP23-348F2, Complete
              Sequence, complete sequence
          Length = 194881

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 347    ccagctgccatgaacagctca 367
              |||||||||||||||||||||
Sbjct: 180890 ccagctgccatgaacagctca 180910
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>gb|AC018457.14| Homo sapiens 3 BAC RP11-198G24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 175330

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 38    gtactcaacaggcacattaca 58
             |||||||||||||||||||||
Sbjct: 54636 gtactcaacaggcacattaca 54616
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>emb|BX950219.10| Mouse DNA sequence from clone RP23-303E24 on chromosome 4, complete
             sequence
          Length = 167874

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 332   aaccatcaataaccaccagct 352
             |||||||||||||||||||||
Sbjct: 58533 aaccatcaataaccaccagct 58513
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>emb|CT033750.18| Mouse DNA sequence from clone RP23-263M5 on chromosome 17, complete
              sequence
          Length = 268616

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 432    caccatttccctgaggcagca 452
              |||||||||||||||||||||
Sbjct: 105481 caccatttccctgaggcagca 105461
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>gb|AC079680.34| Mus musculus strain C57BL/6J chromosome 10 clone rp23-282p18, complete
             sequence
          Length = 175217

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 347   ccagctgccatgaacagctca 367
             |||||||||||||||||||||
Sbjct: 64305 ccagctgccatgaacagctca 64325
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>gb|AC112965.10| Mus musculus chromosome 1, clone RP24-95N17, complete sequence
          Length = 158782

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   gccacatgcaccaccaattc 275
             ||||||||||||||||||||
Sbjct: 87170 gccacatgcaccaccaattc 87151
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>gb|AC114409.17| Mus musculus chromosome 5, clone RP23-148F6, complete sequence
          Length = 222692

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 345   caccagctgccatgaacagc 364
             ||||||||||||||||||||
Sbjct: 38373 caccagctgccatgaacagc 38354
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>emb|CT025848.6| Mouse DNA sequence from clone RP24-326K2 on chromosome 17, complete
              sequence
          Length = 172896

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    tccttctttcatcttggcca 259
              ||||||||||||||||||||
Sbjct: 126860 tccttctttcatcttggcca 126841
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>gb|AC123033.4| Mus musculus BAC clone RP24-482F14 from chromosome 5, complete sequence
          Length = 180745

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 345    caccagctgccatgaacagc 364
              ||||||||||||||||||||
Sbjct: 171209 caccagctgccatgaacagc 171190
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>gb|AC116371.5| Mus musculus chromosome 17, clone RP24-228A1, complete sequence
          Length = 109222

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    tccttctttcatcttggcca 259
              ||||||||||||||||||||
Sbjct: 104840 tccttctttcatcttggcca 104859
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>emb|AL022101.1|HS845O24 Human DNA sequence from clone RP5-845O24 on chromosome 1p36.1-36.2
             Contains the 3' end of the gene for a novel protein
             similar to preferentially expressed antigen in melanoma
             (PRAME) (LOC65121), four genes for novel proteins similar
             to preferentially expressed antigen in melanoma (PRAME)
             (LOC343068, LOC65122, LOC343070 and LOC343071), a novel
             gene, a pseudogene similar to preferentially expressed
             antigen in melanoma (PRAME) and the gene for a novel
             protein similar to heterogeneous nuclear ribonucleoprotein
             C (C1/C2) (HNRPC) (LOC343069), complete sequence
          Length = 119198

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 428   tgtgcaccatttccctgaggcagc 451
             ||||| ||||||||||||||||||
Sbjct: 52213 tgtgctccatttccctgaggcagc 52190
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>emb|CR854856.5| Human DNA sequence from clone RP13-299H21 on chromosome 1, complete
              sequence
          Length = 186712

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 428    tgtgcaccatttccctgaggcagc 451
              ||||| ||||||||||||||||||
Sbjct: 123612 tgtgctccatttccctgaggcagc 123589
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>emb|CR854858.22| Human DNA sequence from clone RP13-177J6 on chromosome 1, complete
              sequence
          Length = 168039

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 428    tgtgcaccatttccctgaggcagc 451
              ||||| ||||||||||||||||||
Sbjct: 138900 tgtgctccatttccctgaggcagc 138877


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,336,387
Number of Sequences: 3902068
Number of extensions: 4336387
Number of successful extensions: 69715
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69633
Number of HSP's gapped (non-prelim): 79
length of query: 467
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 445
effective length of database: 17,147,199,772
effective search space: 7630503898540
effective search space used: 7630503898540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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