ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet71h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TESK1_HUMAN (Q15569) Dual specificity testis-specific protein ki... 30 1.9
2FOXQ1_MOUSE (O70220) Forkhead box protein Q1 (Hepatocyte nuclear... 29 4.1
3PYRB3_PEA (Q43064) Aspartate carbamoyltransferase 3, chloroplast... 29 5.4
4COG1_MOUSE (Q9Z160) Conserved oligomeric Golgi complex component... 29 5.4
5PYRB2_PEA (Q43087) Aspartate carbamoyltransferase 2, chloroplast... 29 5.4
6TESK1_RAT (Q63572) Dual specificity testis-specific protein kina... 28 9.2
7TECT3_HUMAN (Q6NUS6) Tectonic 3 precursor 28 9.2
8GAP_CAEEL (P34288) GTPase-activating protein GAP (CeGAP) 28 9.2
9TTC3_HUMAN (P53804) Tetratricopeptide repeat protein 3 (TPR repe... 28 9.2
10CORIN_HUMAN (Q9Y5Q5) Atrial natriuteric peptide-converting enzym... 28 9.2
11ATT_APLFA (Q7M459) Attractin 28 9.2

>TESK1_HUMAN (Q15569) Dual specificity testis-specific protein kinase 1 (EC|
           2.7.12.1) (Testicular protein kinase 1)
          Length = 626

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 321 PLVRTSSESTVSCSGKAPEGAIPGPSP 401
           P V  S+E  + C G +PE   PGP+P
Sbjct: 458 PAVGPSAEEKMECEGSSPEPEPPGPAP 484



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>FOXQ1_MOUSE (O70220) Forkhead box protein Q1 (Hepatocyte nuclear factor 3|
           forkhead homolog 1) (HNF-3/forkhead-like protein 1)
           (HFH-1) (HFH-1l)
          Length = 400

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = +3

Query: 330 RTSSESTVSCSGKAPEGAIPGPSPGRHAATPLA 428
           R S  +TVS SG  PE A PGP+ G   A P A
Sbjct: 211 RLSHRTTVSASGLRPEEAPPGPA-GTPQAAPAA 242



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>PYRB3_PEA (Q43064) Aspartate carbamoyltransferase 3, chloroplast precursor|
           (EC 2.1.3.2) (Aspartate transcarbamylase 3) (ATCase 3)
          Length = 391

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 421 GVAACRPGDGPGIAPSGAFPEHETVDSELVRTRGIRL 311
           G+     GDGPG  PS A  +  T++ E+ +  GI++
Sbjct: 203 GIPIVNAGDGPGQHPSQALLDVYTIEREIGKLDGIKV 239



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>COG1_MOUSE (Q9Z160) Conserved oligomeric Golgi complex component 1 (Low|
           density lipoprotein receptor defect B-complementing
           protein)
          Length = 980

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 110 SLSTIQRNHSQGNGLGGISGERRPC 36
           +L T+ R H  G G+G + GE + C
Sbjct: 293 TLETVTRQHPTGKGIGALQGEMKLC 317



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>PYRB2_PEA (Q43087) Aspartate carbamoyltransferase 2, chloroplast precursor|
           (EC 2.1.3.2) (Aspartate transcarbamylase 2) (ATCase 2)
          Length = 385

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 421 GVAACRPGDGPGIAPSGAFPEHETVDSELVRTRGIRL 311
           G+     GDGPG  PS A  +  T++ E+ +  GI++
Sbjct: 197 GIPIVNAGDGPGQHPSQALLDVYTIEREIGKLDGIKV 233



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>TESK1_RAT (Q63572) Dual specificity testis-specific protein kinase 1 (EC|
           2.7.12.1) (Testicular protein kinase 1)
          Length = 628

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 327 VRTSSESTVSCSGKAPEGAIPGPSP 401
           V  S+E  + C G +PE   PGP+P
Sbjct: 462 VGPSTEERMDCEGSSPEPEPPGPAP 486



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>TECT3_HUMAN (Q6NUS6) Tectonic 3 precursor|
          Length = 607

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
 Frame = -3

Query: 417 SPRAGR-GTDRESPLRELSPSMKQSTQNWYGQGESDCLIKTKHC----DGPRGCWRNVIS 253
           SPR+G  G     PL  L+  +  S      QG   C +K        +   GC   +  
Sbjct: 377 SPRSGNPGYIVGKPLLALTDDISYSMTLLQSQGNGSCSVKRHEVQFGVNAISGCKLRLKK 436

Query: 252 AQCSECQSEEIQPSAGKRR 196
           A CS  Q E  Q   G+ R
Sbjct: 437 ADCSHLQQEIYQTLHGRPR 455



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>GAP_CAEEL (P34288) GTPase-activating protein GAP (CeGAP)|
          Length = 1317

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 321 PLVRTSSESTVSCSGKAPEGAIPGPSPGRHAAT 419
           P+  TSS S++S SG+A   A+   + G  AAT
Sbjct: 129 PVFTTSSTSSISTSGEASSTAVAAAAAGSVAAT 161



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>TTC3_HUMAN (P53804) Tetratricopeptide repeat protein 3 (TPR repeat protein 3)|
            (TPR repeat protein D)
          Length = 2025

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 363  GKAPEGAIPGPSPGRHAATPL 425
            G+AP   +PGP PG+  AT L
Sbjct: 1784 GEAPSALLPGPPPGQPEATQL 1804



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>CORIN_HUMAN (Q9Y5Q5) Atrial natriuteric peptide-converting enzyme (EC 3.4.21.-)|
           (pro-ANP-converting enzyme) (Corin) (Heart-specific
           serine proteinase ATC2) (Transmembrane protease, serine
           10)
          Length = 1042

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -3

Query: 336 WYGQGESDCLIKTKHCDGPRGCWRNVISAQCSECQSEEIQ 217
           W       CL  T  CDG   C   +    CS CQ +E++
Sbjct: 622 WECPSNKQCLKHTVICDGFPDCPDYMDEKNCSFCQDDELE 661



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>ATT_APLFA (Q7M459) Attractin|
          Length = 58

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 330 GQGESDCLIKTKHCDGPRGCWRNVISAQC-----SECQSEEIQPSAG 205
           G   S C ++ ++CD   GC  N I  +C       CQ++E + ++G
Sbjct: 7   GNITSQCEMQHQNCDDANGC--NTIIEECKTSMVERCQNQEFESASG 51


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,049,538
Number of Sequences: 219361
Number of extensions: 1313527
Number of successful extensions: 4355
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4351
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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