ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet71g09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC006649.1| Caenorhabditis elegans fosmid H01M10, complete se... 42 0.54
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.54
3dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.54
4dbj|AP002900.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.54
5dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.54
6dbj|AK059314.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.54
7gb|AC087893.15| Homo sapiens 12 BAC RP11-423G4 (Roswell Park Can... 40 2.1
8gb|AC163225.4| Mus musculus chromosome 8, clone RP23-319L22, com... 40 2.1
9emb|X82444.1|SPPMT1 S.pombe pmt1+ gene 40 2.1
10emb|AL133156.1|SPAC227 S.pombe chromosome I cosmid c227 40 2.1
11emb|AL109731.1|SPBC19C2 S.pombe chromosome II cosmid c19C2 40 2.1
12gb|AC005824.3| Arabidopsis thaliana chromosome 2 clone F15K20 ma... 40 2.1
13ref|NM_001021584.1| Schizosaccharomyces pombe 972h- hypothetical... 40 2.1
14ref|NM_001018363.1| Schizosaccharomyces pombe 972h- hypothetical... 40 2.1
15dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
16dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
17gb|AC112948.12| Mus musculus chromosome 8, clone RP23-299I18, co... 40 2.1
18ref|NM_127127.2| Arabidopsis thaliana unknown protein AT2G15660 ... 38 8.4
19gb|AY501344.1| Arabidopsis thaliana hypothetical protein (At2g15... 38 8.4
20gb|AC122035.2| Mus musculus BAC clone RP24-414B1 from 15, comple... 38 8.4
21gb|AC004966.2| Homo sapiens PAC clone RP5-1107K15 from 7, comple... 38 8.4
22emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS... 38 8.4
23emb|BX572101.1| Prochlorococcus marinus MIT9313 complete genome;... 38 8.4
24gb|AC006248.4| Arabidopsis thaliana chromosome 2 clone F9O13 map... 38 8.4
25dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticu... 38 8.4
26dbj|AP004194.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.4
27dbj|AP004145.2| Oryza sativa (japonica cultivar-group) genomic D... 38 8.4
28emb|AJ328246.1|HSA328246 Homo sapiens genomic sequence surroundi... 38 8.4
29emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00 38 8.4
30gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete ge... 38 8.4
31emb|Z81456.1|CEB0462 Caenorhabditis elegans Cosmid B0462, comple... 38 8.4
32emb|Z81483.2|CEC43D7 Caenorhabditis elegans Cosmid C43D7, comple... 38 8.4 
>gb|AC006649.1| Caenorhabditis elegans fosmid H01M10, complete sequence
          Length = 14078

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 11   gagttgataaacatcatcaat 31
            |||||||||||||||||||||
Sbjct: 8660 gagttgataaacatcatcaat 8680
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 84      catgcgacttttaacagatcaaaaatcaaacag 116
               |||||||| | | ||||||||||||||||||||
Sbjct: 6969000 catgcgacatcttacagatcaaaaatcaaacag 6968968



 Score = 42.1 bits (21), Expect = 0.54
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 40      ttgcagcaatgcaagtagcaa 60
               |||||||||||||||||||||
Sbjct: 2168422 ttgcagcaatgcaagtagcaa 2168442



 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 52       aagtagcaaaatcagcgtt 70
                |||||||||||||||||||
Sbjct: 27428929 aagtagcaaaatcagcgtt 27428911
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>dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0492F05
          Length = 159242

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 84     catgcgacttttaacagatcaaaaatcaaacag 116
              |||||||| | | ||||||||||||||||||||
Sbjct: 136724 catgcgacatcttacagatcaaaaatcaaacag 136692
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>dbj|AP002900.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0443E07
          Length = 159440

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 84    catgcgacttttaacagatcaaaaatcaaacag 116
             |||||||| | | ||||||||||||||||||||
Sbjct: 90818 catgcgacatcttacagatcaaaaatcaaacag 90786
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>dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0480E02
          Length = 141862

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 40    ttgcagcaatgcaagtagcaa 60
             |||||||||||||||||||||
Sbjct: 89534 ttgcagcaatgcaagtagcaa 89554
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>dbj|AK059314.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-G12, full
           insert sequence
          Length = 834

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 84  catgcgacttttaacagatcaaaaatcaaacag 116
           |||||||| | | ||||||||||||||||||||
Sbjct: 756 catgcgacatcttacagatcaaaaatcaaacag 724
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>gb|AC087893.15| Homo sapiens 12 BAC RP11-423G4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 207829

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   gtacagctaaacaagggctg 138
             ||||||||||||||||||||
Sbjct: 10822 gtacagctaaacaagggctg 10803
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>gb|AC163225.4| Mus musculus chromosome 8, clone RP23-319L22, complete sequence
          Length = 192661

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   acagatcaaaaatcaaacag 116
            ||||||||||||||||||||
Sbjct: 3125 acagatcaaaaatcaaacag 3106
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>emb|X82444.1|SPPMT1 S.pombe pmt1+ gene
          Length = 2445

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 14  ttgataaacatcatcaatactcca 37
           |||| |||||||||||||||||||
Sbjct: 691 ttgaaaaacatcatcaatactcca 668
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>emb|AL133156.1|SPAC227 S.pombe chromosome I cosmid c227
          Length = 32799

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    atcatcaatactccaaattg 42
             ||||||||||||||||||||
Sbjct: 13037 atcatcaatactccaaattg 13056
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>emb|AL109731.1|SPBC19C2 S.pombe chromosome II cosmid c19C2
          Length = 30799

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 14   ttgataaacatcatcaatactcca 37
            |||| |||||||||||||||||||
Sbjct: 1278 ttgaaaaacatcatcaatactcca 1255
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>gb|AC005824.3| Arabidopsis thaliana chromosome 2 clone F15K20 map B68, complete
             sequence
          Length = 118196

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    aacagatcaaaaatcaaaca 115
             ||||||||||||||||||||
Sbjct: 61000 aacagatcaaaaatcaaaca 61019
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>ref|NM_001021584.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC19C2.02),
           partial mRNA
          Length = 993

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 14  ttgataaacatcatcaatactcca 37
           |||| |||||||||||||||||||
Sbjct: 552 ttgaaaaacatcatcaatactcca 529
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>ref|NM_001018363.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC227.09),
           partial mRNA
          Length = 1254

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 23  atcatcaatactccaaattg 42
           ||||||||||||||||||||
Sbjct: 649 atcatcaatactccaaattg 668
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 96       aacagatcaaaaatcaaaca 115
                ||||||||||||||||||||
Sbjct: 29423334 aacagatcaaaaatcaaaca 29423353
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>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0034A04
          Length = 151263

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    aacagatcaaaaatcaaaca 115
             ||||||||||||||||||||
Sbjct: 86256 aacagatcaaaaatcaaaca 86275
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>gb|AC112948.12| Mus musculus chromosome 8, clone RP23-299I18, complete sequence
          Length = 197546

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 97     acagatcaaaaatcaaacag 116
              ||||||||||||||||||||
Sbjct: 161713 acagatcaaaaatcaaacag 161694
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>ref|NM_127127.2| Arabidopsis thaliana unknown protein AT2G15660 mRNA, complete cds
          Length = 1331

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 20  aacatcatcaatactccaa 38
           |||||||||||||||||||
Sbjct: 863 aacatcatcaatactccaa 881
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>gb|AY501344.1| Arabidopsis thaliana hypothetical protein (At2g15660) mRNA,
           complete cds
          Length = 1363

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 20  aacatcatcaatactccaa 38
           |||||||||||||||||||
Sbjct: 863 aacatcatcaatactccaa 881
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>gb|AC122035.2| Mus musculus BAC clone RP24-414B1 from 15, complete sequence
          Length = 179617

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 93    tttaacagatcaaaaatcaaaca 115
             ||||||||||||||| |||||||
Sbjct: 19264 tttaacagatcaaaattcaaaca 19286
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>gb|AC004966.2| Homo sapiens PAC clone RP5-1107K15 from 7, complete sequence
          Length = 134084

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 145    cattactgttggagggtaa 163
              |||||||||||||||||||
Sbjct: 109501 cattactgttggagggtaa 109519
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>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces
              hansenii
          Length = 2037969

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 101    atcaaaaatcaaacagggg 119
              |||||||||||||||||||
Sbjct: 416436 atcaaaaatcaaacagggg 416418
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>emb|BX572101.1| Prochlorococcus marinus MIT9313 complete genome; segment 7/7
          Length = 318136

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 58    caaaatcagcgtttaaaaa 76
             |||||||||||||||||||
Sbjct: 96547 caaaatcagcgtttaaaaa 96565
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>gb|AC006248.4| Arabidopsis thaliana chromosome 2 clone F9O13 map mi398, complete
             sequence
          Length = 119753

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    aacatcatcaatactccaa 38
             |||||||||||||||||||
Sbjct: 73312 aacatcatcaatactccaa 73294
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>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete
               genome
          Length = 2516575

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 94      ttaacagatcaaaaatcaa 112
               |||||||||||||||||||
Sbjct: 1339702 ttaacagatcaaaaatcaa 1339684
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>dbj|AP004194.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0014E08
          Length = 144219

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 52     aagtagcaaaatcagcgtt 70
              |||||||||||||||||||
Sbjct: 111824 aagtagcaaaatcagcgtt 111806
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>dbj|AP004145.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0047F09
          Length = 79652

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 52    aagtagcaaaatcagcgtt 70
             |||||||||||||||||||
Sbjct: 18818 aagtagcaaaatcagcgtt 18800
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>emb|AJ328246.1|HSA328246 Homo sapiens genomic sequence surrounding NotI site, clone
           NL4-CI11RS
          Length = 725

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 135 gctgcctttgcattactgttgga 157
           |||||||||||| ||||||||||
Sbjct: 382 gctgcctttgcagtactgttgga 404
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>emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00
          Length = 1457619

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 58     caaaatcagcgtttaaaaa 76
              |||||||||||||||||||
Sbjct: 995742 caaaatcagcgtttaaaaa 995760
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>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome
          Length = 1664970

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 14     ttgataaacatcatcaata 32
              |||||||||||||||||||
Sbjct: 556698 ttgataaacatcatcaata 556680
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>emb|Z81456.1|CEB0462 Caenorhabditis elegans Cosmid B0462, complete sequence
          Length = 12920

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 97    acagatcaaaaatcaaaca 115
             |||||||||||||||||||
Sbjct: 11432 acagatcaaaaatcaaaca 11414
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>emb|Z81483.2|CEC43D7 Caenorhabditis elegans Cosmid C43D7, complete sequence
          Length = 34981

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 59   aaaatcagcgtttaaaaac 77
            |||||||||||||||||||
Sbjct: 5033 aaaatcagcgtttaaaaac 5015


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,488,315
Number of Sequences: 3902068
Number of extensions: 1488315
Number of successful extensions: 105191
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104904
Number of HSP's gapped (non-prelim): 287
length of query: 173
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 151
effective length of database: 17,147,199,772
effective search space: 2589227165572
effective search space used: 2589227165572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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