ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet71f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CD8A_CANFA (P33706) T-cell surface glycoprotein CD8 alpha chain ... 28 5.9
2PPNK_PARUW (Q6MDK7) Probable inorganic polyphosphate/ATP-NAD kin... 28 7.7

>CD8A_CANFA (P33706) T-cell surface glycoprotein CD8 alpha chain precursor|
           (CD8a antigen)
          Length = 239

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 192 RATAPSGPARVRRRPPDVEEAAICMGKLQAAVE 290
           RA A SGP+R R  PP V      +G+L A VE
Sbjct: 17  RAAAASGPSRFRMTPPKV------VGQLHAQVE 43



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>PPNK_PARUW (Q6MDK7) Probable inorganic polyphosphate/ATP-NAD kinase (EC|
           2.7.1.23) (Poly(P)/ATP NAD kinase)
          Length = 279

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 115 LLPHIFFGSAVVTS-SISVRVFVLEAYIPEDICSDGIS 5
           + PH      +V    IS++V  L +Y P ++ SDGIS
Sbjct: 197 ICPHTISNRPIVLMPEISIQVKYLSSYAPVEVSSDGIS 234


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,702,020
Number of Sequences: 219361
Number of extensions: 459700
Number of successful extensions: 1093
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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