ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaet71f11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X62438.1|HVPERO H.vulgare mRNA for peroxidase Length = 740 Score = 759 bits (383), Expect = 0.0 Identities = 409/415 (98%), Gaps = 2/415 (0%) Strand = Plus / Minus Query: 1 aataaaattcattctttgttgagaaaataaagtggatccagtcaaactttacgatctctc 60 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 734 aataaaattcattatttgttgagaaaataaagtggatccagtcaaactttacgacctctc 675 Query: 61 tcgcacacacaacggatgcatatgttttgacctctcatcttattggctagacatcacact 120 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 674 tcgcacacacaacagatgcatatgttttgacctctcatcttattggctagacatcacact 615 Query: 121 tccacgattcaaagtttaaaacacatagactacttaacggccactcacacagtcacacag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 614 tccacgattcaaagtttaaaacacatagactacttaacggccactcacacagtcacacag 555 Query: 181 tactactacgttacaccgattggttatatatctctcacatgtcagcggcgatcccctcgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 554 tactactacgttacaccgattggttatatatctctcacatgtcagcggcgatcccctcgt 495 Query: 241 cgccggcgacggcggtctcgatgtcctggacacgcctgttggggacggcgcagttgttcc 300 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 494 -gccggcgacggcggtctcgatgtcct-gacacgcctgttggggacggcgcagttgttcc 437 Query: 301 ggatctcgcccttggtgccggtgagaatgtccatgttgctcatcttggtcatggacctcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 436 ggatctcgcccttggtgccggtgagaatgtccatgttgctcatcttggtcatggacctcg 377 Query: 361 cgaactgctcgaagaaagcgccctggtggagggagaagcgtgtggccatgcgctt 415 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 376 cgaactgctcgaagaaagcgccctggttgagggagaagcgtgtggccatgcgctt 322
>emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related peroxidase Length = 1245 Score = 634 bits (320), Expect = e-179 Identities = 326/328 (99%) Strand = Plus / Minus Query: 88 tgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacacata 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1245 tgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacacata 1186 Query: 148 gactacttaacggccactcacacagtcacacagtactactacgttacaccgattggttat 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1185 gactacttaacggccactcacacagtcacacagtactactacgttacaccgattggttat 1126 Query: 208 atatctctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtcct 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1125 atatctctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtcct 1066 Query: 268 ggacacgcctgttggggacggcgcagttgttccggatctcgcccttggtgccggtgagaa 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1065 ggacacgcctgttggggacggcgcagttgttccggatctcgcccttggtgccggtgagaa 1006 Query: 328 tgtccatgttgctcatcttggtcatggacctcgcgaactgctcgaagaaagcgccctggt 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1005 tgtccatgttgctcatcttggtcatggacctcgcgaactgctcgaagaaagcgccctggt 946 Query: 388 ggagggagaagcgtgtggccatgcgctt 415 |||||||||||| |||||||||||||| Sbjct: 945 tgagggagaagcgggtggccatgcgctt 918
>emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor (prx gene), cultivar Cheyenne Length = 1226 Score = 283 bits (143), Expect = 2e-73 Identities = 188/203 (92%) Strand = Plus / Minus Query: 213 tctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtcctggaca 272 ||||||||||| |||||||||||||||||||||| | |||||||||||| ||||||||| Sbjct: 1107 tctcacatgtcggcggcgatcccctcgtcgccggtggtggcggtctcgatatcctggaca 1048 Query: 273 cgcctgttggggacggcgcagttgttccggatctcgcccttggtgccggtgagaatgtcc 332 |||||||||||| ||||||||||||||||||||||||||||| |||||||||| | |||| Sbjct: 1047 cgcctgttgggggcggcgcagttgttccggatctcgcccttgttgccggtgaggaggtcc 988 Query: 333 atgttgctcatcttggtcatggacctcgcgaactgctcgaagaaagcgccctggtggagg 392 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| Sbjct: 987 atgttgctcatcttggtcatggaccgggcgaactgctcgaagaaggcgccctggttgagc 928 Query: 393 gagaagcgtgtggccatgcgctt 415 |||||||| |||||||||||||| Sbjct: 927 gagaagcgggtggccatgcgctt 905
>gb|AY857763.1| Triticum monococcum peroxidase 9 (POX9) mRNA, partial cds Length = 760 Score = 149 bits (75), Expect = 8e-33 Identities = 141/163 (86%) Strand = Plus / Minus Query: 251 ggcggtctcgatgtcctggacacgcctgttggggacggcgcagttgttccggatctcgcc 310 ||||||||||||| ||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct: 587 ggcggtctcgatgcccttgacacggctgttggggacggcgcagttgaaccggatctcgcc 528 Query: 311 cttggtgccggtgagaatgtccatgttgctcatcttggtcatggacctcgcgaactgctc 370 || | |||||||||| | |||||||||||||||||| |||||| | ||||||||||| Sbjct: 527 ctggctgccggtgagcaagtccatgttgctcatcttcaccatggatttggcgaactgctc 468 Query: 371 gaagaaagcgccctggtggagggagaagcgtgtggccatgcgc 413 |||||| || ||||||| ||| ||||| || || ||||||||| Sbjct: 467 gaagaatgccccctggttgagcgagaaccgcgtcgccatgcgc 425
>gb|AY857764.1| Triticum monococcum peroxidase 10 (POX10) mRNA, partial cds Length = 1308 Score = 99.6 bits (50), Expect = 7e-18 Identities = 101/118 (85%) Strand = Plus / Minus Query: 251 ggcggtctcgatgtcctggacacgcctgttggggacggcgcagttgttccggatctcgcc 310 ||||||||||||| | | ||| ||||| ||||||||||||||||| | ||||||||| || Sbjct: 1023 ggcggtctcgatgacatcgacgcgcctattggggacggcgcagttctgccggatctcacc 964 Query: 311 cttggtgccggtgagaatgtccatgttgctcatcttggtcatggacctcgcgaactgc 368 || |||||| ||||| | |||||||||||||||||| ||||||| | ||||||||| Sbjct: 963 ctgggtgccagtgagcaagtccatgttgctcatcttcaccatggacttggcgaactgc 906
>ref|XM_474444.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1041 Score = 77.8 bits (39), Expect = 3e-11 Identities = 96/115 (83%) Strand = Plus / Minus Query: 286 cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 345 ||||||||||||| ||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 970 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 911 Query: 346 tggtcatggacctcgcgaactgctcgaagaaagcgccctggtggagggagaagcg 400 || |||||| | |||||||| |||||||| ||| |||||| ||||| |||||| Sbjct: 910 tgaccatggagcgtgcgaactggtcgaagaaggcggcctggttgagggcgaagcg 856
>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome Length = 124321 Score = 77.8 bits (39), Expect = 3e-11 Identities = 96/115 (83%) Strand = Plus / Minus Query: 286 cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 345 ||||||||||||| ||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 90573 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 90514 Query: 346 tggtcatggacctcgcgaactgctcgaagaaagcgccctggtggagggagaagcg 400 || |||||| | |||||||| |||||||| ||| |||||| ||||| |||||| Sbjct: 90513 tgaccatggagcgtgcgaactggtcgaagaaggcggcctggttgagggcgaagcg 90459
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 77.8 bits (39), Expect = 3e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 286 cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 345 ||||||||||||| ||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 35222888 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 35222947 Query: 346 tggtcatggacctcgcgaactgctcgaagaaagcgccctggtggagggagaagcg 400 || |||||| | |||||||| |||||||| ||| |||||| ||||| |||||| Sbjct: 35222948 tgaccatggagcgtgcgaactggtcgaagaaggcggcctggttgagggcgaagcg 35223002
>dbj|AK104833.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-B05, full insert sequence Length = 1298 Score = 77.8 bits (39), Expect = 3e-11 Identities = 96/115 (83%) Strand = Plus / Minus Query: 286 cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 345 ||||||||||||| ||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 1026 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 967 Query: 346 tggtcatggacctcgcgaactgctcgaagaaagcgccctggtggagggagaagcg 400 || |||||| | |||||||| |||||||| ||| |||||| ||||| |||||| Sbjct: 966 tgaccatggagcgtgcgaactggtcgaagaaggcggcctggttgagggcgaagcg 912
>dbj|AK102307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090B01, full insert sequence Length = 1487 Score = 77.8 bits (39), Expect = 3e-11 Identities = 96/115 (83%) Strand = Plus / Minus Query: 286 cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 345 ||||||||||||| ||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 1177 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 1118 Query: 346 tggtcatggacctcgcgaactgctcgaagaaagcgccctggtggagggagaagcg 400 || |||||| | |||||||| |||||||| ||| |||||| ||||| |||||| Sbjct: 1117 tgaccatggagcgtgcgaactggtcgaagaaggcggcctggttgagggcgaagcg 1063
>dbj|AK060789.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-D09, full insert sequence Length = 1349 Score = 77.8 bits (39), Expect = 3e-11 Identities = 96/115 (83%) Strand = Plus / Minus Query: 286 cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 345 ||||||||||||| ||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 1028 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 969 Query: 346 tggtcatggacctcgcgaactgctcgaagaaagcgccctggtggagggagaagcg 400 || |||||| | |||||||| |||||||| ||| |||||| ||||| |||||| Sbjct: 968 tgaccatggagcgtgcgaactggtcgaagaaggcggcctggttgagggcgaagcg 914
>tpe|BN000588.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx59 gene for class III peroxidase 59 precursor, exons 1-3 Length = 1290 Score = 77.8 bits (39), Expect = 3e-11 Identities = 96/115 (83%) Strand = Plus / Minus Query: 286 cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 345 ||||||||||||| ||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 1219 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 1160 Query: 346 tggtcatggacctcgcgaactgctcgaagaaagcgccctggtggagggagaagcg 400 || |||||| | |||||||| |||||||| ||| |||||| ||||| |||||| Sbjct: 1159 tgaccatggagcgtgcgaactggtcgaagaaggcggcctggttgagggcgaagcg 1105
>emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete sequence Length = 82895 Score = 77.8 bits (39), Expect = 3e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 286 cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 345 ||||||||||||| ||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 66474 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 66533 Query: 346 tggtcatggacctcgcgaactgctcgaagaaagcgccctggtggagggagaagcg 400 || |||||| | |||||||| |||||||| ||| |||||| ||||| |||||| Sbjct: 66534 tgaccatggagcgtgcgaactggtcgaagaaggcggcctggttgagggcgaagcg 66588
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24, complete sequence Length = 173770 Score = 77.8 bits (39), Expect = 3e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 286 cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 345 ||||||||||||| ||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 18733 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 18792 Query: 346 tggtcatggacctcgcgaactgctcgaagaaagcgccctggtggagggagaagcg 400 || |||||| | |||||||| |||||||| ||| |||||| ||||| |||||| Sbjct: 18793 tgaccatggagcgtgcgaactggtcgaagaaggcggcctggttgagggcgaagcg 18847
>gb|AF019743.1|AF019743 Oryza sativa cationic peroxidase (OsCPX1) mRNA, complete cds Length = 1333 Score = 77.8 bits (39), Expect = 3e-11 Identities = 96/115 (83%) Strand = Plus / Minus Query: 286 cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 345 ||||||||||||| ||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 1015 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 956 Query: 346 tggtcatggacctcgcgaactgctcgaagaaagcgccctggtggagggagaagcg 400 || |||||| | |||||||| |||||||| ||| |||||| ||||| |||||| Sbjct: 955 tgaccatggagcgtgcgaactggtcgaagaaggcggcctggttgagggcgaagcg 901
>ref|NM_125807.3| Arabidopsis thaliana peroxidase AT5G64110 mRNA, complete cds Length = 1307 Score = 56.0 bits (28), Expect = 9e-05 Identities = 28/28 (100%) Strand = Plus / Minus Query: 339 ctcatcttggtcatggacctcgcgaact 366 |||||||||||||||||||||||||||| Sbjct: 1013 ctcatcttggtcatggacctcgcgaact 986
>gb|AY065173.1| Arabidopsis thaliana peroxidase ATP3a homolog (At5g64110; MHJ24.9) mRNA, complete cds Length = 1177 Score = 56.0 bits (28), Expect = 9e-05 Identities = 28/28 (100%) Strand = Plus / Minus Query: 339 ctcatcttggtcatggacctcgcgaact 366 |||||||||||||||||||||||||||| Sbjct: 1011 ctcatcttggtcatggacctcgcgaact 984
>emb|BX830987.1|CNS0A0RL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS46ZC04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1264 Score = 56.0 bits (28), Expect = 9e-05 Identities = 28/28 (100%) Strand = Plus / Minus Query: 339 ctcatcttggtcatggacctcgcgaact 366 |||||||||||||||||||||||||||| Sbjct: 970 ctcatcttggtcatggacctcgcgaact 943
>gb|BT003353.1| Arabidopsis thaliana peroxidase ATP3a homolog (At5g64110) mRNA, complete cds Length = 1087 Score = 56.0 bits (28), Expect = 9e-05 Identities = 28/28 (100%) Strand = Plus / Minus Query: 339 ctcatcttggtcatggacctcgcgaact 366 |||||||||||||||||||||||||||| Sbjct: 929 ctcatcttggtcatggacctcgcgaact 902
>gb|AY086554.1| Arabidopsis thaliana clone 2577 mRNA, complete sequence Length = 1158 Score = 56.0 bits (28), Expect = 9e-05 Identities = 28/28 (100%) Strand = Plus / Minus Query: 339 ctcatcttggtcatggacctcgcgaact 366 |||||||||||||||||||||||||||| Sbjct: 1013 ctcatcttggtcatggacctcgcgaact 986
>dbj|AB008266.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHJ24 Length = 48622 Score = 56.0 bits (28), Expect = 9e-05 Identities = 28/28 (100%) Strand = Plus / Plus Query: 339 ctcatcttggtcatggacctcgcgaact 366 |||||||||||||||||||||||||||| Sbjct: 28045 ctcatcttggtcatggacctcgcgaact 28072
>gb|DQ376124.1| Eucalyptus globulus subsp. globulus peroxidase (Px1) mRNA, partial cds Length = 957 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 333 atgttgctcatcttggtcatggacctcgcgaactgctcgaagaa 376 ||||||| ||||||| ||||||| | ||||||||||||||||| Sbjct: 734 atgttgcccatcttgaccatggacttggcgaactgctcgaagaa 691
>gb|AC100751.6| Mus musculus chromosome 18, clone RP23-249P18, complete sequence Length = 253910 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 162 cactcacacagtcacacagtactact 187 |||||| ||||||||||||||||||| Sbjct: 35412 cactcatacagtcacacagtactact 35437
>gb|AY389595.1| Hyacinthus orientalis secretory peroxidase mRNA, partial cds Length = 578 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 297 ttccggatctcgcccttggtgccggtgag 325 ||||||||||||||||||| |||||||| Sbjct: 266 ttccggatctcgcccttggatccggtgag 238
>gb|AC108215.4| Homo sapiens BAC clone RP11-630A13 from 4, complete sequence Length = 166595 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 ttctttgttgagaaaataaag 32 ||||||||||||||||||||| Sbjct: 26403 ttctttgttgagaaaataaag 26423
>emb|BX323878.10| Zebrafish DNA sequence from clone CH211-57E23 in linkage group 12, complete sequence Length = 190541 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 14 ctttgttgagaaaataaagtggatc 38 ||||||||| ||||||||||||||| Sbjct: 148276 ctttgttgacaaaataaagtggatc 148300
>emb|BX000473.6| Zebrafish DNA sequence from clone CH211-141O9, complete sequence Length = 180366 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 14 ctttgttgagaaaataaagtggatc 38 ||||||||| ||||||||||||||| Sbjct: 168889 ctttgttgacaaaataaagtggatc 168913
>ref|NM_127372.2| Arabidopsis thaliana peroxidase AT2G18150 mRNA, complete cds Length = 1248 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 341 catcttggtcatggacctcgcgaactgctcgaagaa 376 ||||||| |||| ||| |||||||||||||||||| Sbjct: 1012 catcttgatcatcgactccgcgaactgctcgaagaa 977
>ref|NM_183542.2| Oryza sativa (japonica cultivar-group), mRNA Length = 653 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 tcgtcgccggcgacggcggt 256 |||||||||||||||||||| Sbjct: 440 tcgtcgccggcgacggcggt 459
>ref|XM_478764.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1472 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 cgatcccctcgtcgccggcg 248 |||||||||||||||||||| Sbjct: 48 cgatcccctcgtcgccggcg 67
>gb|AC107452.10| Mus musculus chromosome 15, clone RP23-236C21, complete sequence Length = 180069 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 ttgagaaaataaagtggatc 38 |||||||||||||||||||| Sbjct: 35824 ttgagaaaataaagtggatc 35805
>gb|AC090889.3| Canis familiaris clone RP81-156O18, complete sequence Length = 146276 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aataaaattcattctttgtt 20 |||||||||||||||||||| Sbjct: 37052 aataaaattcattctttgtt 37033
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 tcccctcgtcgccggcgacggcgg 255 ||||||||||||||||| |||||| Sbjct: 14162748 tcccctcgtcgccggcgccggcgg 14162771
>emb|BX927308.14| Zebrafish DNA sequence from clone DKEY-16M19 in linkage group 22, complete sequence Length = 220546 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 caaactttacgatctctctcgcac 66 |||||||||||||||||| ||||| Sbjct: 163832 caaactttacgatctctcacgcac 163855
>gb|AC122257.4| Mus musculus BAC clone RP23-178I11 from 17, complete sequence Length = 222314 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 ataaaattcattctttgttg 21 |||||||||||||||||||| Sbjct: 72442 ataaaattcattctttgttg 72423
>emb|BX538351.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 2/4 Length = 307050 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 ttcattctttgttgagaaaataaa 31 |||||||||||||||||| ||||| Sbjct: 26597 ttcattctttgttgagaatataaa 26620
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 368 ctcgaagaaagcgccctggtggagggag 395 |||||||||||||| |||||||| |||| Sbjct: 1459222 ctcgaagaaagcgcgctggtggacggag 1459195
>gb|AC125784.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0012F18, from chromosome 3, complete sequence Length = 122903 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 tcccctcgtcgccggcgacggcgg 255 ||||||||||||||||| |||||| Sbjct: 37039 tcccctcgtcgccggcgccggcgg 37062
>emb|CR293514.9| Zebrafish DNA sequence from clone CH211-153C2 in linkage group 22, complete sequence Length = 185892 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 caaactttacgatctctctcgcac 66 |||||||||||||||||| ||||| Sbjct: 105158 caaactttacgatctctcacgcac 105181
>gb|AC007212.7| Arabidopsis thaliana chromosome 2 clone F8D23 map PhyB, complete sequence Length = 57550 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 341 catcttggtcatggacctcgcgaactgctcgaagaa 376 ||||||| |||| ||| |||||||||||||||||| Sbjct: 35643 catcttgatcatcgactccgcgaactgctcgaagaa 35608
>gb|AY081298.1| Arabidopsis thaliana putative peroxidase (At2g18150) mRNA, complete cds Length = 1248 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 341 catcttggtcatggacctcgcgaactgctcgaagaa 376 ||||||| |||| ||| |||||||||||||||||| Sbjct: 1011 catcttgatcatcgactccgcgaactgctcgaagaa 976
>ref|XM_627558.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd6_1970), partial mRNA Length = 7002 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 ttcattctttgttgagaaaataaa 31 |||||||||||||||||| ||||| Sbjct: 1650 ttcattctttgttgagaatataaa 1627
>gb|AC161263.2| Mus musculus BAC clone RP23-296K6 from chromosome 8, complete sequence Length = 199032 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 gttatatatctctcacatgtcagc 226 ||||||||||| |||||||||||| Sbjct: 173426 gttatatatctatcacatgtcagc 173449
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 290 gcagttgttccggatctcgcccttggtgccggtgag 325 |||||| |||||||||||||||| | ||||||||| Sbjct: 20926200 gcagttcttccggatctcgccctggtcgccggtgag 20926235
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 cgatcccctcgtcgccggcg 248 |||||||||||||||||||| Sbjct: 22867465 cgatcccctcgtcgccggcg 22867484
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 tcccctcgtcgccggcgacggcgg 255 ||||||||||||||||| |||||| Sbjct: 14157723 tcccctcgtcgccggcgccggcgg 14157746
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 tcgtcgccggcgacggcggt 256 |||||||||||||||||||| Sbjct: 631577 tcgtcgccggcgacggcggt 631596
>gb|AC092596.3| Homo sapiens BAC clone RP11-100J5 from 4, complete sequence Length = 175644 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 76 atgcatatgttttgacctctcatcttattggc 107 |||||||||||| ||||| ||||||| ||||| Sbjct: 156758 atgcatatgtttagacctgtcatctttttggc 156727
>gb|AY085060.1| Arabidopsis thaliana clone 126030 mRNA, complete sequence Length = 1247 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 341 catcttggtcatggacctcgcgaactgctcgaagaa 376 ||||||| |||| ||| |||||||||||||||||| Sbjct: 1011 catcttgatcatcgactccgcgaactgctcgaagaa 976
>gb|AF451952.1| Arabidopsis thaliana class III peroxidase ATP36 pseudogene mRNA, complete sequence Length = 1182 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 341 catcttggtcatggacctcgcgaactgctcgaagaa 376 ||||||| |||| ||| |||||||||||||||||| Sbjct: 929 catcttgatcatcgactccgcgaactgctcgaagaa 894
>gb|BT002557.1| Arabidopsis thaliana putative peroxidase (At2g18150) mRNA, complete cds Length = 1073 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 341 catcttggtcatggacctcgcgaactgctcgaagaa 376 ||||||| |||| ||| |||||||||||||||||| Sbjct: 945 catcttgatcatcgactccgcgaactgctcgaagaa 910
>gb|AC084341.17| Homo sapiens chromosome 8, clone RP11-760J15, complete sequence Length = 141058 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 gttgagaaaataaagtggat 37 |||||||||||||||||||| Sbjct: 94793 gttgagaaaataaagtggat 94774
>dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0032H19 Length = 126434 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 tcgtcgccggcgacggcggt 256 |||||||||||||||||||| Sbjct: 15321 tcgtcgccggcgacggcggt 15340
>dbj|AP002882.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439B06 Length = 135991 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 tcgtcgccggcgacggcggt 256 |||||||||||||||||||| Sbjct: 106182 tcgtcgccggcgacggcggt 106201
>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1019_E02 Length = 121607 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 cgatcccctcgtcgccggcg 248 |||||||||||||||||||| Sbjct: 60732 cgatcccctcgtcgccggcg 60751
>emb|AJ132756.1|ONO132756 Ophiostoma novo-ulmi mitovirus 6-Ld mRNA for putative RNA-dependent RNA polymerase Length = 2343 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 attcattctttgttgagaaa 26 |||||||||||||||||||| Sbjct: 1547 attcattctttgttgagaaa 1566
>dbj|AK109551.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-A03, full insert sequence Length = 1325 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 290 gcagttgttccggatctcgcccttggtgccggtgag 325 |||||| |||||||||||||||| | ||||||||| Sbjct: 1110 gcagttcttccggatctcgccctggtcgccggtgag 1075
>dbj|AK106380.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-D10, full insert sequence Length = 1471 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 cgatcccctcgtcgccggcg 248 |||||||||||||||||||| Sbjct: 47 cgatcccctcgtcgccggcg 66
>dbj|AK103623.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133N12, full insert sequence Length = 654 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 tcgtcgccggcgacggcggt 256 |||||||||||||||||||| Sbjct: 440 tcgtcgccggcgacggcggt 459
>tpe|BN000667.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx138 gene for class III peroxidase 138 precursor, exons 1-4 Length = 9140 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 290 gcagttgttccggatctcgcccttggtgccggtgag 325 |||||| |||||||||||||||| | ||||||||| Sbjct: 9119 gcagttcttccggatctcgccctggtcgccggtgag 9084
>gb|AC165167.3| Mus musculus BAC clone RP23-27M6 from chromosome 17, complete sequence Length = 235787 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 ataaaattcattctttgttg 21 |||||||||||||||||||| Sbjct: 166995 ataaaattcattctttgttg 166976
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 290 gcagttgttccggatctcgcccttggtgccggtgag 325 |||||| |||||||||||||||| | ||||||||| Sbjct: 20852414 gcagttcttccggatctcgccctggtcgccggtgag 20852449
>emb|AL713943.3|CNS07YPC Oryza sativa chromosome 12, . BAC OSJNBa0030G16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 182172 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 290 gcagttgttccggatctcgcccttggtgccggtgag 325 |||||| |||||||||||||||| | ||||||||| Sbjct: 11690 gcagttcttccggatctcgccctggtcgccggtgag 11725
>emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa0035E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 107819 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 290 gcagttgttccggatctcgcccttggtgccggtgag 325 |||||| |||||||||||||||| | ||||||||| Sbjct: 32795 gcagttcttccggatctcgccctggtcgccggtgag 32760
>gb|AC144858.3| Mus musculus BAC clone RP24-144F3 from 8, complete sequence Length = 185158 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 gttatatatctctcacatgtcagc 226 ||||||||||| |||||||||||| Sbjct: 41286 gttatatatctatcacatgtcagc 41309 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,552,989 Number of Sequences: 3902068 Number of extensions: 3552989 Number of successful extensions: 77572 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77068 Number of HSP's gapped (non-prelim): 502 length of query: 415 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 393 effective length of database: 17,147,199,772 effective search space: 6738849510396 effective search space used: 6738849510396 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
