ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet71e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloropla... 35 0.052

>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCI type III CAB-8)
          Length = 273

 Score = 35.0 bits (79), Expect = 0.052
 Identities = 14/16 (87%), Positives = 16/16 (100%)
 Frame = -3

Query: 226 LSDPVNNNILTSLKFH 179
           L+DPVNNN+LTSLKFH
Sbjct: 258 LADPVNNNVLTSLKFH 273


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,936,165
Number of Sequences: 219361
Number of extensions: 493604
Number of successful extensions: 1068
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 80,573,946
effective HSP length: 51
effective length of database: 69,386,535
effective search space used: 1665276840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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