ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet71e02 |
|---|---|
| Clone Library Name | barley_pub |
>ATPG_CORDI (Q6NHT0) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1| sector gamma subunit) Length = 325 Score = 30.8 bits (68), Expect = 0.80 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Frame = -1 Query: 384 YVRLKAGYVAANWVKEGGGSRWDEGYDVTARFLDYCDSRKPGFVAEMNG--KLKDGYNDD 211 Y + + VA W W+E +DV +D GF A NG + +DG N D Sbjct: 125 YYKFRGQEVAGAWTGFSQDPSWEETHDVRRHLID-------GFNASSNGTARYRDGLNTD 177 Query: 210 YFVQILG 190 +I G Sbjct: 178 EGQEIQG 184
>ALMS1_MOUSE (Q8K4E0) Alstrom syndrome protein 1 homolog| Length = 3251 Score = 30.4 bits (67), Expect = 1.0 Identities = 17/52 (32%), Positives = 22/52 (42%) Frame = -1 Query: 294 RFLDYCDSRKPGFVAEMNGKLKDGYNDDYFVQILGTSADQLWNDYKAKHSQG 139 R Y DS+ V + D D+ Q+LGT D L N KH +G Sbjct: 2413 RVPSYLDSKSDTTVESSHSGSNDAIAPDFPPQMLGTRDDDLSNTVNIKHKEG 2464
>HLYAC_ECOLI (P09983) Hemolysin, chromosomal| Length = 1023 Score = 30.0 bits (66), Expect = 1.4 Identities = 21/78 (26%), Positives = 35/78 (44%) Frame = -1 Query: 399 EGIADYVRLKAGYVAANWVKEGGGSRWDEGYDVTARFLDYCDSRKPGFVAEMNGKLKDGY 220 + + ++V K V A W K+ G + ++ GY D+R F+ E N K+ Y Sbjct: 414 QAMFEHVASKMADVIAEWEKKHGKNYFENGY----------DARHAAFL-EDNFKILSQY 462 Query: 219 NDDYFVQILGTSADQLWN 166 N +Y V+ Q W+ Sbjct: 463 NKEYSVERSVLITQQHWD 480
>HLYAP_ECOLI (P08715) Hemolysin, plasmid| Length = 1024 Score = 30.0 bits (66), Expect = 1.4 Identities = 21/78 (26%), Positives = 35/78 (44%) Frame = -1 Query: 399 EGIADYVRLKAGYVAANWVKEGGGSRWDEGYDVTARFLDYCDSRKPGFVAEMNGKLKDGY 220 + + ++V K V A W K+ G + ++ GY D+R F+ E N K+ Y Sbjct: 415 QAMFEHVASKMADVIAEWEKKHGKNYFENGY----------DARHAAFL-EDNFKILSQY 463 Query: 219 NDDYFVQILGTSADQLWN 166 N +Y V+ Q W+ Sbjct: 464 NKEYSVERSVLITQQHWD 481
>HIS8_SYNY3 (P73807) Histidinol-phosphate aminotransferase (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase) Length = 349 Score = 28.9 bits (63), Expect = 3.0 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = -1 Query: 264 PGFVAEMNGKLKDGYNDDYFVQILGTSA 181 P + EM+ K++D YN D Q+LGT+A Sbjct: 223 PALIEEMD-KVRDSYNLDRLAQVLGTAA 249
>CA077_MOUSE (Q9CY57) Protein C1orf77 homolog| Length = 249 Score = 28.9 bits (63), Expect = 3.0 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = -3 Query: 403 LRGDRGLRAAQGRVRSGELGEGG-RRQPVGRGIRRDGQVPGLLRLAQARVRGG 248 LRG R + G R G G GG R +GRG G + G R R RGG Sbjct: 140 LRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG 192
>AAM1_RHOSH (Q9JN46) Putative glycosidase (EC 3.2.1.-) (Fragment)| Length = 678 Score = 28.9 bits (63), Expect = 3.0 Identities = 20/49 (40%), Positives = 23/49 (46%) Frame = -3 Query: 403 LRGDRGLRAAQGRVRSGELGEGGRRQPVGRGIRRDGQVPGLLRLAQARV 257 +R R LRA +G E G G RRDG L+RLA ARV Sbjct: 46 MRPARALRAPKGP--DSEANRQGVAAATGAQDRRDGGEEALMRLADARV 92
>CA077_RAT (Q498T2) Protein C1orf77 homolog| Length = 248 Score = 28.9 bits (63), Expect = 3.0 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = -3 Query: 403 LRGDRGLRAAQGRVRSGELGEGG-RRQPVGRGIRRDGQVPGLLRLAQARVRGG 248 LRG R + G R G G GG R +GRG G + G R R RGG Sbjct: 139 LRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG 191
>CA077_HUMAN (Q9Y3Y2) Protein C1orf77| Length = 248 Score = 28.9 bits (63), Expect = 3.0 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = -3 Query: 403 LRGDRGLRAAQGRVRSGELGEGG-RRQPVGRGIRRDGQVPGLLRLAQARVRGG 248 LRG R + G R G G GG R +GRG G + G R R RGG Sbjct: 139 LRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG 191
>CA077_BOVIN (Q3SYW9) Protein C1orf77 homolog| Length = 248 Score = 28.9 bits (63), Expect = 3.0 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = -3 Query: 403 LRGDRGLRAAQGRVRSGELGEGG-RRQPVGRGIRRDGQVPGLLRLAQARVRGG 248 LRG R + G R G G GG R +GRG G + G R R RGG Sbjct: 139 LRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG 191
>TIG_STRR6 (Q8DR29) Trigger factor (TF)| Length = 427 Score = 28.9 bits (63), Expect = 3.0 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = -1 Query: 255 VAEMNGKL-KDGYNDDYFVQILGTSADQLWNDYKAK 151 V E G L + G N D + QI GT+ + L N Y+A+ Sbjct: 318 VNEFLGNLQRQGINPDMYFQITGTTQEDLHNQYQAE 353
>TIG_STRPN (Q97SG9) Trigger factor (TF)| Length = 427 Score = 28.9 bits (63), Expect = 3.0 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = -1 Query: 255 VAEMNGKL-KDGYNDDYFVQILGTSADQLWNDYKAK 151 V E G L + G N D + QI GT+ + L N Y+A+ Sbjct: 318 VNEFLGNLQRQGINPDMYFQITGTTQEDLHNQYQAE 353
>AVEN_MOUSE (Q9D9K3) Cell death regulator Aven| Length = 342 Score = 28.5 bits (62), Expect = 4.0 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Frame = -3 Query: 397 GDRGLRAAQGRVRSGELGEGGRRQPVGRGIRRDGQVPGLLRLA--QARVRGGDEXXXXXX 224 GDR A + G G+GG R+ GRG RR G+ G LR + RGG Sbjct: 22 GDREPVGAATALARGGCGDGGGRRGRGRGFRR-GRGGGGLRGGRWEPGGRGGGASTRVEE 80 Query: 223 XXXXXXXADPRDERG 179 + DE+G Sbjct: 81 DSDSETYGEENDEQG 95
>DEAD_ECO57 (Q8XA87) Cold-shock DEAD box protein A (EC 3.6.1.-) (ATP-dependent| RNA helicase deaD) Length = 628 Score = 28.5 bits (62), Expect = 4.0 Identities = 24/55 (43%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Frame = -3 Query: 400 RGDRGLRAAQGRVRSGELGEGGRRQPVGR---GIRRDGQVPGLLRLAQARVRGGD 245 RG G R GR SGE EGGR GR G RR+G+ P R GGD Sbjct: 575 RGFSGERREGGRNFSGERREGGRGD--GRRFSGERREGRAPRRDDSTGRRRFGGD 627
>DXR_NEIMB (Q9K1G8) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 394 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +3 Query: 75 LVYQYIDVDRYTCMRCNMKRISPGSAWPC 161 L +Q D DR+ C+R + ++ G A PC Sbjct: 302 LTFQKPDFDRFPCLRLAYEAMNAGGAAPC 330
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/33 (54%), Positives = 19/33 (57%) Frame = -3 Query: 400 RGDRGLRAAQGRVRSGELGEGGRRQPVGRGIRR 302 RG GLR +GR G G GG R P GRG RR Sbjct: 1384 RGPGGLRG-RGRGGRGGGGGGGGRGPRGRGGRR 1415
>DEAD_SHIFL (P0A9P8) Cold-shock DEAD box protein A (EC 3.6.1.-) (ATP-dependent| RNA helicase deaD) Length = 628 Score = 28.1 bits (61), Expect = 5.2 Identities = 24/55 (43%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Frame = -3 Query: 400 RGDRGLRAAQGRVRSGELGEGGRRQPVGR---GIRRDGQVPGLLRLAQARVRGGD 245 RG G R GR SGE EGGR GR G RR+G+ P R GGD Sbjct: 575 RGFGGERREGGRNFSGERREGGRGD--GRRFSGERREGRAPRRDDSTGRRRFGGD 627
>DEAD_ECOLI (P0A9P6) Cold-shock DEAD box protein A (EC 3.6.1.-) (ATP-dependent| RNA helicase deaD) Length = 628 Score = 28.1 bits (61), Expect = 5.2 Identities = 24/55 (43%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Frame = -3 Query: 400 RGDRGLRAAQGRVRSGELGEGGRRQPVGR---GIRRDGQVPGLLRLAQARVRGGD 245 RG G R GR SGE EGGR GR G RR+G+ P R GGD Sbjct: 575 RGFGGERREGGRNFSGERREGGRGD--GRRFSGERREGRAPRRDDSTGRRRFGGD 627
>DEAD_ECOL6 (P0A9P7) Cold-shock DEAD box protein A (EC 3.6.1.-) (ATP-dependent| RNA helicase deaD) Length = 628 Score = 28.1 bits (61), Expect = 5.2 Identities = 24/55 (43%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Frame = -3 Query: 400 RGDRGLRAAQGRVRSGELGEGGRRQPVGR---GIRRDGQVPGLLRLAQARVRGGD 245 RG G R GR SGE EGGR GR G RR+G+ P R GGD Sbjct: 575 RGFGGERREGGRNFSGERREGGRGD--GRRFSGERREGRAPRRDDSTGRRRFGGD 627
>ROCA_OCEIH (Q8ERF4) 1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) (P5C| dehydrogenase) Length = 515 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Frame = -1 Query: 348 WVKEGGGSRWDEGYDVTARFLDYCDSRKPGFVAEMNGK-LKDGYNDD--YFVQILG 190 W+ G WD+ TA +D+ + V GK L D N+D YF Q LG Sbjct: 118 WLSYDAGKPWDQADGDTAEGIDFLEYYARHMVELEKGKPLADRPNEDNKYFYQPLG 173
>LAMC1_DROME (P15215) Laminin gamma-1 chain precursor (Laminin B2 chain)| Length = 1639 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -1 Query: 174 LWNDYKAKHSQG*SVSCCIACMCTGL 97 L+ND K K S V+ C AC C GL Sbjct: 339 LYNDLKWKRSTSTEVNECKACNCNGL 364
>ATPG_COREF (Q8FQ21) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1| sector gamma subunit) Length = 326 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Frame = -1 Query: 384 YVRLKAGYVAANWVKEGGGSRWDEGYDVTARFLDYCDSRKPGFVAEMNG--KLKDGYN 217 Y + + YVA W W+ +DV +D GF A +G K +DG N Sbjct: 125 YYKFREDYVAGAWTGFSQDPDWNATHDVRRHLID-------GFTATSDGTAKWRDGLN 175
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/52 (32%), Positives = 25/52 (48%) Frame = -3 Query: 400 RGDRGLRAAQGRVRSGELGEGGRRQPVGRGIRRDGQVPGLLRLAQARVRGGD 245 RG RG R +G G+ G QP + + + Q G +AQ ++GGD Sbjct: 548 RGVRGARGGRGGNVGGKRKADGYNQPDSKRRQTNNQNWGSQPIAQQPLQGGD 599
>CO6A3_CHICK (P15989) Collagen alpha-3(VI) chain precursor| Length = 3137 Score = 27.7 bits (60), Expect = 6.8 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 11/61 (18%) Frame = -3 Query: 400 RGDRGLRAAQG-----------RVRSGELGEGGRRQPVGRGIRRDGQVPGLLRLAQARVR 254 RGDRGLR G R + GE+G+ G P G + GQ G+ R A R Sbjct: 2153 RGDRGLRGDPGESGADNTQRGTRGQKGEIGQMGEPGPAG----QRGQDGGVGRKGMAGRR 2208 Query: 253 G 251 G Sbjct: 2209 G 2209
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/52 (32%), Positives = 25/52 (48%) Frame = -3 Query: 400 RGDRGLRAAQGRVRSGELGEGGRRQPVGRGIRRDGQVPGLLRLAQARVRGGD 245 RG RG R +G G+ G QP + + + Q G +AQ ++GGD Sbjct: 458 RGVRGARGGRGGNVGGKRKADGYNQPDSKRRQTNNQNWGSQPIAQQPLQGGD 509
>DACD_SALTY (P37604) Penicillin-binding protein 6B precursor| (D-alanyl-D-alanine carboxypeptidase) (EC 3.4.16.4) (DD-peptidase) (DD-carboxypeptidase) (PBP-6B) Length = 390 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Frame = -1 Query: 318 DEGYDVTARFLDYCDSRKPGFVAEMNGKLKD-GYNDDYFVQILGTSA 181 D G D DY +P FVA MN +K D +F + G A Sbjct: 130 DSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDA 176
>RS3_RALSO (Q8XV18) 30S ribosomal protein S3| Length = 264 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -3 Query: 373 QGRVRSGELGEGGRRQPVGRGIRRDG 296 +GR R GE GG+R+ G G RR G Sbjct: 231 EGRRREGEGRPGGQRRGAGAGGRRSG 256
>DPOE1_HUMAN (Q07864) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)| (DNA polymerase II subunit A) Length = 2286 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +3 Query: 54 CSNTSILLVYQYIDVDRYTCMRCNMKRISPGS 149 C N +++V YI V Y CM+ ++R +PGS Sbjct: 1992 CQNYFLMIVSAYI-VAVYHCMKDGLRRSAPGS 2022
>FDOG_ECOLI (P32176) Formate dehydrogenase-O, major subunit (EC 1.2.1.2)| (Formate dehydrogenase-O alpha subunit) (FDH-Z alpha subunit) (Aerobic formate dehydrogenase major subunit) Length = 1016 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -1 Query: 324 RWDEGYDVTARFLDYCDSRKPGFVAEMNGKLKDGYN 217 +WD+GYDV L Y + K G ++NG + G+N Sbjct: 530 KWDKGYDV----LQYFEMMKEG---KVNGYICQGFN 558
>PDR2_ORYSA (Q8GU92) Probable pleiotropic drug resistance protein 2| Length = 1464 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/57 (29%), Positives = 25/57 (43%) Frame = -1 Query: 402 FEGIADYVRLKAGYVAANWVKEGGGSRWDEGYDVTARFLDYCDSRKPGFVAEMNGKL 232 FEGI R+K GY A W+ E ++ V D+CD + + + N L Sbjct: 1115 FEGIKGVSRIKDGYNPATWMLEVSTISQEQALGV-----DFCDIYRKSELFQRNKAL 1166
>IL1F9_MOUSE (Q8R460) Interleukin-1 family member 9 (IL-1F9)| Length = 164 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +2 Query: 287 RNLAVTSYPSSHRLPPPSFTQFAATYP 367 RN A+ + P SHR+ P S T YP Sbjct: 33 RNQALVTVPRSHRVTPVSVTILPCKYP 59 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,998,533 Number of Sequences: 219361 Number of extensions: 818493 Number of successful extensions: 2457 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 2388 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2456 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
