| Clone Name | rbaet71c12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF525764.1| Aegilops tauschii subsp. strangulata SBE I pseudogene, partial sequence; SBE I pseudogene, complete sequence; and starch branching enzyme I (SBE I) gene, complete cds Length = 25187 Score = 46.1 bits (23), Expect = 0.075 Identities = 38/43 (88%) Strand = Plus / Minus Query: 241 gcttgcttcttcctgacttcctccatctcttcttgggttttgg 283 ||||||||||| || ||||| |||||||||| || |||||||| Sbjct: 2584 gcttgcttctttctaacttcatccatctcttgtttggttttgg 2542
>gb|AC093009.5| Homo sapiens 3 BAC RP11-548O23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 89214 Score = 46.1 bits (23), Expect = 0.075 Identities = 23/23 (100%) Strand = Plus / Plus Query: 251 tcctgacttcctccatctcttct 273 ||||||||||||||||||||||| Sbjct: 31294 tcctgacttcctccatctcttct 31316
>gb|AC106721.4| Homo sapiens 3 BAC RP11-49H3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 106246 Score = 46.1 bits (23), Expect = 0.075 Identities = 23/23 (100%) Strand = Plus / Minus Query: 251 tcctgacttcctccatctcttct 273 ||||||||||||||||||||||| Sbjct: 46258 tcctgacttcctccatctcttct 46236
>emb|CR932109.1|CNS0KY7U Paramecium tetraurelia centrin-related protein gene Length = 5100 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 121 acaacaacaaactcaaacaagt 142 |||||||||||||||||||||| Sbjct: 482 acaacaacaaactcaaacaagt 503
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 gccttttctgcctgcttcttc 318 ||||||||||||||||||||| Sbjct: 540771 gccttttctgcctgcttcttc 540751
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 gccttttctgcctgcttcttc 318 ||||||||||||||||||||| Sbjct: 540587 gccttttctgcctgcttcttc 540567
>gb|AC121244.13| Medicago truncatula clone mth2-31b9, complete sequence Length = 146189 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 ttttatttaacatatacacaa 103 ||||||||||||||||||||| Sbjct: 52898 ttttatttaacatatacacaa 52878
>gb|AC010057.7| Drosophila melanogaster 3L BAC RP98-26C18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 192588 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 118 cacacaacaacaaactcaaac 138 ||||||||||||||||||||| Sbjct: 45120 cacacaacaacaaactcaaac 45140
>gb|AC091219.2| Drosophila melanogaster 3L BAC RP98-4C3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 168047 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 118 cacacaacaacaaactcaaac 138 ||||||||||||||||||||| Sbjct: 84470 cacacaacaacaaactcaaac 84490
>gb|AE003469.3| Drosophila melanogaster chromosome 3L, section 3 of 83 of the complete sequence Length = 286515 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 118 cacacaacaacaaactcaaac 138 ||||||||||||||||||||| Sbjct: 71149 cacacaacaacaaactcaaac 71169
>gb|AC109200.13| Mus musculus chromosome 8, clone RP23-26G21, complete sequence Length = 162734 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 ttttctgcctgcttcttcaa 320 |||||||||||||||||||| Sbjct: 20660 ttttctgcctgcttcttcaa 20641
>ref|XM_323857.1| Neurospora crassa OR74A hypothetical protein (NCU04505.1) partial mRNA Length = 2274 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 acttcctccatctcttcttg 275 |||||||||||||||||||| Sbjct: 2239 acttcctccatctcttcttg 2220
>ref|XM_951823.1| Neurospora crassa OR74A hypothetical protein (NCU04505.1) partial mRNA Length = 2274 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 acttcctccatctcttcttg 275 |||||||||||||||||||| Sbjct: 2239 acttcctccatctcttcttg 2220
>gb|AC165415.5| Mus musculus chromosome 15, clone RP23-17G19, complete sequence Length = 227254 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 atactgaatatgccacataa 63 |||||||||||||||||||| Sbjct: 174265 atactgaatatgccacataa 174246
>gb|AY341195.1| Anopheles gambiae clone Yd21 laminin gene, partial cds Length = 1038 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 ccgcgtcggccttttctgcctgct 313 ||||| |||||||||||||||||| Sbjct: 766 ccgcgacggccttttctgcctgct 743
>gb|AY341194.1| Anopheles gambiae clone Yd1 laminin gene, partial cds Length = 1036 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 ccgcgtcggccttttctgcctgct 313 ||||| |||||||||||||||||| Sbjct: 764 ccgcgacggccttttctgcctgct 741
>gb|AY341193.1| Anopheles gambiae clone L3-5 laminin gene, partial cds Length = 1036 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 ccgcgtcggccttttctgcctgct 313 ||||| |||||||||||||||||| Sbjct: 764 ccgcgacggccttttctgcctgct 741
>gb|AY341192.1| Anopheles gambiae clone 4aRR laminin gene, partial cds Length = 1036 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 ccgcgtcggccttttctgcctgct 313 ||||| |||||||||||||||||| Sbjct: 764 ccgcgacggccttttctgcctgct 741
>gb|AC095558.10| Rattus norvegicus 18 BAC CH230-8D7 (Children's Hospital Oakland Research Institute) complete sequence Length = 226956 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 acaacaacaaactcaaacaa 140 |||||||||||||||||||| Sbjct: 49968 acaacaacaaactcaaacaa 49987
>emb|AL139187.19| Human DNA sequence from clone RP11-81F11 on chromosome 13 Contains a gene for a novel protein similar to RhoGAP, complete sequence Length = 166329 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 acaacaaactcaaacaagtt 143 |||||||||||||||||||| Sbjct: 51202 acaacaaactcaaacaagtt 51183
>gb|AC157904.3| Mus musculus chromosome 18, clone RP23-379G12, complete sequence Length = 182922 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 acaacaacaaactcaaacaa 140 |||||||||||||||||||| Sbjct: 145090 acaacaacaaactcaaacaa 145071
>emb|BX022097.1|CNS08P7P Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA32DC12 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 700 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 ccgcgtcggccttttctgcctgct 313 ||||| |||||||||||||||||| Sbjct: 111 ccgcgacggccttttctgcctgct 88
>emb|AJ271193.2|AGA271193 Anopheles gambiae mRNA for laminin gamma 1 precursor (lanB2 gene) Length = 6074 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 ccgcgtcggccttttctgcctgct 313 ||||| |||||||||||||||||| Sbjct: 4501 ccgcgacggccttttctgcctgct 4478
>emb|BX649128.1|HSM809280 Homo sapiens mRNA; cDNA DKFZp686K0548 (from clone DKFZp686K0548) Length = 6667 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ccttttctgcctgcttcttc 318 |||||||||||||||||||| Sbjct: 3289 ccttttctgcctgcttcttc 3308
>emb|AL832673.1|HSM803983 Homo sapiens mRNA; cDNA DKFZp313B1017 (from clone DKFZp313B1017) Length = 5270 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ccttttctgcctgcttcttc 318 |||||||||||||||||||| Sbjct: 1901 ccttttctgcctgcttcttc 1920
>dbj|AK091132.1| Homo sapiens cDNA FLJ33813 fis, clone CTONG2002744 Length = 3674 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ccttttctgcctgcttcttc 318 |||||||||||||||||||| Sbjct: 313 ccttttctgcctgcttcttc 332
>gb|AY833023.1| Plasmodium vivax strain Thailand MS128 merozoite surface protein 3 alpha (MSP3a) gene, complete cds Length = 2544 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 gccttttctgcctgcttctt 317 |||||||||||||||||||| Sbjct: 1355 gccttttctgcctgcttctt 1336
>gb|AY833021.1| Plasmodium vivax strain Thailand MS111 merozoite surface protein 3 alpha (MSP3a) gene, complete cds Length = 2100 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 gccttttctgcctgcttctt 317 |||||||||||||||||||| Sbjct: 911 gccttttctgcctgcttctt 892
>gb|AY833011.1| Plasmodium vivax strain Thailand A10 merozoite surface protein 3 alpha (MSP3a) gene, complete cds Length = 2529 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 gccttttctgcctgcttctt 317 |||||||||||||||||||| Sbjct: 1349 gccttttctgcctgcttctt 1330
>gb|AC093820.2| Homo sapiens BAC clone RP11-373J7 from 4, complete sequence Length = 151878 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 aatatactaatactgaatat 54 |||||||||||||||||||| Sbjct: 91066 aatatactaatactgaatat 91047
>gb|AC093774.2| Homo sapiens BAC clone RP11-135O12 from 2, complete sequence Length = 93499 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 tccatctcttcttgggtttt 281 |||||||||||||||||||| Sbjct: 54411 tccatctcttcttgggtttt 54392
>gb|AY190937.1| Drosophila erecta clone DERF01_40_C09 (D1409) genomic sequence Length = 37077 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 cacataaatacaacatttaa 76 |||||||||||||||||||| Sbjct: 12534 cacataaatacaacatttaa 12553
>gb|AC133785.2| Homo sapiens BAC clone RP13-586I5 from 2, complete sequence Length = 73720 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 tccatctcttcttgggtttt 281 |||||||||||||||||||| Sbjct: 69957 tccatctcttcttgggtttt 69938
>ref|XM_308240.2| Anopheles gambiae str. PEST ENSANGP00000021549 (ENSANGG00000019060), partial mRNA Length = 5254 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 ccgcgtcggccttttctgcctgct 313 ||||| |||||||||||||||||| Sbjct: 4505 ccgcgacggccttttctgcctgct 4482
>gb|AF093584.1|AF093584 Plasmodium vivax merozoite surface protein-3 (Msp-3) gene, complete cds Length = 5123 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 gccttttctgcctgcttctt 317 |||||||||||||||||||| Sbjct: 3079 gccttttctgcctgcttctt 3060
>dbj|AP000787.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-712B9, complete sequence Length = 173441 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 ccttttctgcctgcttcttc 318 |||||||||||||||||||| Sbjct: 49453 ccttttctgcctgcttcttc 49434
>gb|AC102173.15| Mus musculus chromosome 18, clone RP23-472D7, complete sequence Length = 185768 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 acaacaacaaactcaaacaa 140 |||||||||||||||||||| Sbjct: 96472 acaacaacaaactcaaacaa 96453
>gb|AC137126.13| Mus musculus chromosome 15, clone RP24-250I9, complete sequence Length = 193459 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 atactgaatatgccacataa 63 |||||||||||||||||||| Sbjct: 19995 atactgaatatgccacataa 19976
>emb|AL672073.8| Mouse DNA sequence from clone RP23-333P16 on chromosome X, complete sequence Length = 216812 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 acaacaacaaactcaaacaa 140 |||||||||||||||||||| Sbjct: 98679 acaacaacaaactcaaacaa 98660
>emb|Z73358.1|HS65O19 Human DNA sequence from clone RP1-65O19 on chromosome 13. Contains the 5' end of the gene for a novel RhoGAP domain protein, ESTs, STSs and GSSs, complete sequence Length = 95274 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 acaacaaactcaaacaagtt 143 |||||||||||||||||||| Sbjct: 53713 acaacaaactcaaacaagtt 53732
>gb|AY266091.1| Plasmodium vivax isolate INDO-94 merozoite surface protein-3a gene, complete cds Length = 2421 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 gccttttctgcctgcttctt 317 |||||||||||||||||||| Sbjct: 1337 gccttttctgcctgcttctt 1318
>gb|AY266089.1| Plasmodium vivax isolate MALA-84 merozoite surface protein-3a gene, complete cds Length = 2091 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 gccttttctgcctgcttctt 317 |||||||||||||||||||| Sbjct: 911 gccttttctgcctgcttctt 892
>gb|AY266087.1| Plasmodium vivax isolate SKOR-67 merozoite surface protein-3a gene, complete cds Length = 2571 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 gccttttctgcctgcttctt 317 |||||||||||||||||||| Sbjct: 1382 gccttttctgcctgcttctt 1363 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,296,402 Number of Sequences: 3902068 Number of extensions: 4296402 Number of successful extensions: 96487 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96383 Number of HSP's gapped (non-prelim): 104 length of query: 350 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 328 effective length of database: 17,147,199,772 effective search space: 5624281525216 effective search space used: 5624281525216 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)