>RPA1_RAT (O54889) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)|
           (RNA polymerase I 194 kDa subunit) (RPA194)
          Length = 1716

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -3

Query: 281 ASKRSPHCIIGRAVVRK 231
           A+KR PHC  GR+VVRK
Sbjct: 201 AAKRCPHCKTGRSVVRK 217

>ZG52_XENLA (P18727) Gastrula zinc finger protein XLCGF52.1 (Fragment)|
          Length = 223

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
 Frame = +1

Query: 136 LTNQETATPAPNQSCSPCMYTHMAI*T-HTHTCLRTTARPMM--QCGERFEASWRTSC-- 300
           L +Q + T     +CS C  T     T   H  + T  RP     CG+RF  S   +C  
Sbjct: 133 LKHQRSHTGEKPYACSECQKTFAHKTTLMVHERIHTGERPYECNDCGKRFIHSTNLNCHQ 192

Query: 301 --HAGESPGT 324
             H+GE P T
Sbjct: 193 KIHSGEKPFT 202

>LEU2_HELHP (Q7VH31) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 420

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
 Frame = +1

Query: 112 ELINKPLQLTNQETATPAPNQSCSPCMYTHMAI*THTHTCLRTTARPMM-QCGERFEASW 288
           E IN+    T  +        +C PC+  HM I      C+ TT R  + + G      +
Sbjct: 338 ECINRGYLETFIKAGAVVSTPTCGPCLGGHMGILAANEKCVSTTNRNFVGRMGHITSEVY 397

Query: 289 RTSCHAGESPGTHGIIAA 342
            +S     +    GI++A
Sbjct: 398 LSSPEVAAASAVRGILSA 415

>ASSY_AQUAE (O67213) Argininosuccinate synthase (EC 6.3.4.5)|
           (Citrulline--aspartate ligase)
          Length = 401

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 247 RPMMQCGERFEASWRTSCHAGESPGTHGI 333
           +P+   GER+E  W+   +  E  G HG+
Sbjct: 226 KPVYLNGERYEEQWKLIANLNEIAGRHGV 254

>UXUR_ECOLI (P39161) Uxu operon transcriptional regulator|
          Length = 257

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +1

Query: 118 INKPLQLTNQETATPAPNQSCSPCMYTHMAI*THTHTCLRTTARPMMQCGERFEASWR 291
           + + LQL  +E A+ AP  S S  M  H+AI   TH  +           E F  SW+
Sbjct: 125 MRQALQLEERELASSAPGSSESGDMQFHLAIAEATHNSMLV---------ELFRQSWQ 173

>RPA1_MOUSE (O35134) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)|
           (RNA polymerase I 194 kDa subunit) (RPA194)
          Length = 1717

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 281 ASKRSPHCIIGRAVVRK 231
           A+K+ PHC  GR+VVRK
Sbjct: 201 AAKQCPHCKTGRSVVRK 217

>RPA1_HUMAN (O95602) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)|
           (RNA polymerase I 194 kDa subunit) (RPA194)
          Length = 1717

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 278 SKRSPHCIIGRAVVRK 231
           +KR PHC  GR+VVRK
Sbjct: 202 AKRCPHCKTGRSVVRK 217

>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-related protein)
          Length = 1559

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 144  SRNSNPCTKSIMFSMYVHPYGHIDTHTHMLAHNRPP 251
            S  S+P  +  MF++  H + H   H+H+  H + P
Sbjct: 1401 SLTSDPLARLQMFNVTPHHHQHSHIHSHLHLHQQDP 1436

>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-like protein) (Atrophin-1-related protein)
          Length = 1566

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 144  SRNSNPCTKSIMFSMYVHPYGHIDTHTHMLAHNRPP 251
            S  S+P  +  MF++  H + H   H+H+  H + P
Sbjct: 1408 SLTSDPLARLQMFNVTPHHHQHSHIHSHLHLHQQDP 1443

>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-2)
          Length = 1558

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 144  SRNSNPCTKSIMFSMYVHPYGHIDTHTHMLAHNRPP 251
            S  S+P  +  MF++  H + H   H+H+  H + P
Sbjct: 1400 SLTSDPLARLQMFNVTPHHHQHSHIHSHLHLHQQDP 1435

>ZG58_XENLA (P18730) Gastrula zinc finger protein XLCGF58.1 (Fragment)|
          Length = 420

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
 Frame = +1

Query: 121 NKPLQLTNQETATPAPNQSCSPCMYTHMAI*THTHTCLRTTARPMMQCGERFEASWRTSC 300
           N  + L +     P     C     T + +  H +T       P  +CG+ F   +   C
Sbjct: 328 NSNVHLQSHTGEKPYTCAECGKSFTTKVTLNHHRYTHTGKKPYPCTECGKCFRQKYELRC 387

Query: 301 ----HAGESP 318
               H GE+P
Sbjct: 388 HQYSHTGENP 397

>DMF1_SCHPO (P78953) Division mal foutue 1 protein|
          Length = 920

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 183 SMYVHPYGHIDTHTHMLAHNRPPDDAMRRTL*SILAHVMS 302
           SMY+H YGH+D+     +    PD+  R +  S+   + S
Sbjct: 83  SMYMHGYGHLDS---SFSSQHSPDNRKRMSSTSVFKRINS 119


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,011,211
Number of Sequences: 219361
Number of extensions: 1043010
Number of successful extensions: 2661
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2650
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)