ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet71c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 1.6
2dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic D... 38 1.6
3gb|AC004613.1| Homo sapiens PAC clone RP4-651K2 from 7, complete... 36 6.2
4ref|XM_661671.1| Cryptosporidium hominis TU502 hypothetical prot... 36 6.2
5emb|AL766847.1|SAG766847 Streptococcus agalactiae NEM316 complet... 36 6.2
6ref|XM_626265.1| Cryptosporidium parvum Iowa II putative phospha... 36 6.2
7gb|AC124172.4| Mus musculus BAC clone RP23-168P24 from chromosom... 36 6.2
8dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome 36 6.2
9gb|AC172370.2| Gallus gallus BAC clone CH261-119J18 from chromos... 36 6.2
10emb|AL672033.12| Mouse DNA sequence from clone RP23-436F2 on chr... 36 6.2

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 28       ttttgggggaaattaccca 46
                |||||||||||||||||||
Sbjct: 28061483 ttttgggggaaattaccca 28061501



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>dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0450A04
          Length = 162545

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 28    ttttgggggaaattaccca 46
             |||||||||||||||||||
Sbjct: 44779 ttttgggggaaattaccca 44797



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>gb|AC004613.1| Homo sapiens PAC clone RP4-651K2 from 7, complete sequence
          Length = 121166

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 1    gggaattccaaatgaaat 18
            ||||||||||||||||||
Sbjct: 3844 gggaattccaaatgaaat 3827



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>ref|XM_661671.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.50030)
            partial mRNA
          Length = 1488

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 1    gggaattccaaatgaaat 18
            ||||||||||||||||||
Sbjct: 1032 gggaattccaaatgaaat 1049



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>emb|AL766847.1|SAG766847 Streptococcus agalactiae NEM316 complete genome, segment 5
          Length = 167050

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 28    ttttgggggaaattaccc 45
             ||||||||||||||||||
Sbjct: 97121 ttttgggggaaattaccc 97138



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>ref|XM_626265.1| Cryptosporidium parvum Iowa II putative phosphate/phosphoenolpyruvate
            translocator with 9 transmembrane domains (cgd5_3410),
            partial mRNA
          Length = 1488

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 1    gggaattccaaatgaaat 18
            ||||||||||||||||||
Sbjct: 1032 gggaattccaaatgaaat 1049



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>gb|AC124172.4| Mus musculus BAC clone RP23-168P24 from chromosome 1, complete sequence
          Length = 192946

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 2      ggaattccaaatgaaatt 19
              ||||||||||||||||||
Sbjct: 132235 ggaattccaaatgaaatt 132218



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>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 30      ttgggggaaattacccaa 47
               ||||||||||||||||||
Sbjct: 2018744 ttgggggaaattacccaa 2018761



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>gb|AC172370.2| Gallus gallus BAC clone CH261-119J18 from chromosome ul, complete
              sequence
          Length = 260878

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 3      gaattccaaatgaaattc 20
              ||||||||||||||||||
Sbjct: 240981 gaattccaaatgaaattc 240998



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>emb|AL672033.12| Mouse DNA sequence from clone RP23-436F2 on chromosome X, complete
              sequence
          Length = 181933

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 1      gggaattccaaatgaaat 18
              ||||||||||||||||||
Sbjct: 166915 gggaattccaaatgaaat 166898


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 363,647
Number of Sequences: 3902068
Number of extensions: 363647
Number of successful extensions: 117906
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117799
Number of HSP's gapped (non-prelim): 107
length of query: 48
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 28
effective length of database: 17,155,003,908
effective search space: 480340109424
effective search space used: 480340109424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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