| Clone Name | rbaet71b08 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ496572.1|HVU496572 Hordeum vulgare partial mRNA for putative glycosyltransferase (sf2 gene) Length = 863 Score = 52.0 bits (26), Expect = 6e-04 Identities = 29/30 (96%) Strand = Plus / Minus Query: 70 ctagattccatggcgtcatggctgtcgtcg 99 ||||||||||||||||||||||||| |||| Sbjct: 863 ctagattccatggcgtcatggctgtggtcg 834
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 46.1 bits (23), Expect = 0.035 Identities = 23/23 (100%) Strand = Plus / Minus Query: 76 tccatggcgtcatggctgtcgtc 98 ||||||||||||||||||||||| Sbjct: 1808032 tccatggcgtcatggctgtcgtc 1808010
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 44.1 bits (22), Expect = 0.14 Identities = 28/30 (93%) Strand = Plus / Minus Query: 81 ggcgtcatggctgtcgtcgtagcaaagatc 110 |||||||| ||||||||||| ||||||||| Sbjct: 2126954 ggcgtcatagctgtcgtcgtcgcaaagatc 2126925
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 42.1 bits (21), Expect = 0.54 Identities = 21/21 (100%) Strand = Plus / Plus Query: 79 atggcgtcatggctgtcgtcg 99 ||||||||||||||||||||| Sbjct: 1189124 atggcgtcatggctgtcgtcg 1189144
>gb|AE011982.1| Xanthomonas axonopodis pv. citri str. 306, section 360 of 469 of the complete genome Length = 13732 Score = 42.1 bits (21), Expect = 0.54 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 atggcgtcatggctgtcgtcg 99 ||||||||||||||||||||| Sbjct: 3315 atggcgtcatggctgtcgtcg 3295
>emb|BX510908.8| Mouse DNA sequence from clone RP23-264F3 on chromosome 2, complete sequence Length = 80804 Score = 42.1 bits (21), Expect = 0.54 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 aaaaagaaagttcaaagctgc 135 ||||||||||||||||||||| Sbjct: 66724 aaaaagaaagttcaaagctgc 66704
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 42.1 bits (21), Expect = 0.54 Identities = 21/21 (100%) Strand = Plus / Plus Query: 79 atggcgtcatggctgtcgtcg 99 ||||||||||||||||||||| Sbjct: 1222669 atggcgtcatggctgtcgtcg 1222689
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 atggcgtcatggctgtcgtc 98 |||||||||||||||||||| Sbjct: 1849290 atggcgtcatggctgtcgtc 1849271
>gb|AC147068.3| Pan troglodytes BAC clone RP43-165E11 from 7, complete sequence Length = 177119 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 atccaaaaagaaagttcaaa 130 |||||||||||||||||||| Sbjct: 34418 atccaaaaagaaagttcaaa 34437
>gb|DQ096557.1| Mesocestoides sp. C KP-2005 isolate KAP113 5.8S ribosomal RNA gene and internal transcribed spacer 2, partial sequence Length = 519 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 tggctgtcgtcgtagcaaag 107 |||||||||||||||||||| Sbjct: 274 tggctgtcgtcgtagcaaag 293
>gb|AC009362.8|AC009362 Homo sapiens chromosome 7 clone RP11-256C6, complete sequence Length = 160156 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 atccaaaaagaaagttcaaa 130 |||||||||||||||||||| Sbjct: 77816 atccaaaaagaaagttcaaa 77835
>gb|AC166097.5| Mus musculus BAC clone RP24-447P10 from chromosome 9, complete sequence Length = 196951 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 110 catccaaaaagaaagttca 128 ||||||||||||||||||| Sbjct: 60367 catccaaaaagaaagttca 60349
>gb|AC110521.14| Mus musculus chromosome 12, clone RP23-50H15, complete sequence Length = 189474 Score = 38.2 bits (19), Expect = 8.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 104 aaagatcatccaaaaagaaagtt 126 |||||||||| |||||||||||| Sbjct: 94138 aaagatcatcaaaaaagaaagtt 94116
>gb|AC046160.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-130F23, complete sequence Length = 214627 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 119 agaaagttcaaagctgccc 137 ||||||||||||||||||| Sbjct: 154344 agaaagttcaaagctgccc 154326
>gb|AC113970.8| Mus musculus chromosome 1, clone RP23-125E16, complete sequence Length = 235703 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 119 agaaagttcaaagctgccc 137 ||||||||||||||||||| Sbjct: 165246 agaaagttcaaagctgccc 165228
>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces hansenii Length = 2051428 Score = 38.2 bits (19), Expect = 8.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 128 aaagctgcccaaacacaccgatc 150 ||||||| ||||||||||||||| Sbjct: 29766 aaagctgaccaaacacaccgatc 29744
>gb|AC025264.16| Homo sapiens 12 BAC RP11-704P17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 193626 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 128 aaagctgcccaaacacacc 146 ||||||||||||||||||| Sbjct: 184266 aaagctgcccaaacacacc 184284
>gb|AC024337.8| Homo sapiens chromosome 15, clone RP11-236L14, complete sequence Length = 106945 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 156 gcctggatgtcttctccaa 174 ||||||||||||||||||| Sbjct: 21013 gcctggatgtcttctccaa 20995
>gb|AC018574.6| Homo sapiens chromosome , clone RP11-4G2, complete sequence Length = 171858 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 156 gcctggatgtcttctccaa 174 ||||||||||||||||||| Sbjct: 37421 gcctggatgtcttctccaa 37439
>emb|AL161711.4|CEY10G11A Caenorhabditis elegans YAC Y10G11A, complete sequence Length = 33670 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 115 aaaaagaaagttcaaagct 133 ||||||||||||||||||| Sbjct: 16827 aaaaagaaagttcaaagct 16809
>emb|AL929119.19| Zebrafish DNA sequence from clone CH211-214G8 in linkage group 20, complete sequence Length = 136176 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 110 catccaaaaagaaagttca 128 ||||||||||||||||||| Sbjct: 118209 catccaaaaagaaagttca 118191
>gb|AC167967.6| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940144D9, complete sequence Length = 114276 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 81 ggcgtcatggctgtcgtcg 99 ||||||||||||||||||| Sbjct: 70106 ggcgtcatggctgtcgtcg 70124 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,166,061 Number of Sequences: 3902068 Number of extensions: 1166061 Number of successful extensions: 145210 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 145040 Number of HSP's gapped (non-prelim): 170 length of query: 174 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 152 effective length of database: 17,147,199,772 effective search space: 2606374365344 effective search space used: 2606374365344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)