>HMOC_DROME (P22810) Homeotic protein ocelliless (Protein orthodenticle)|
          Length = 671

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = -3

Query: 353 RRRTPGRCPCETSPYVRYTSI-CYRWYTLQVWMDVWVFSFSSLGRSTQESSTTTILLLSC 177
           R R P R PC   P  R   I C R  + ++W  ++  + +++      ++TTT+     
Sbjct: 534 RHRHPSRAPCPRRPSPRTAWITCRRRISTRIWCRIYSSNTAAV------AATTTVQRGQV 587

Query: 176 VRV-LHVIIN*LEFMVDLIII 117
           VRV + V +  L  +VDL+++
Sbjct: 588 VRVRVRVRVRVLVLVVDLVLV 608

>MIB_DROME (Q9VUX2) Ubiquitin ligase protein mind-bomb (EC 6.3.2.-) (Mind bomb|
           homolog) (D-mib)
          Length = 1226

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 176 HMTIVVLLLYSTPELNVPTKKKKTPIH 256
           H+ IV LL+    +LN+P K   TP+H
Sbjct: 782 HVQIVKLLVQDGADLNIPDKDGDTPLH 808

>BRS3_HUMAN (P32247) Bombesin receptor subtype-3 (BRS-3)|
          Length = 399

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = -3

Query: 338 GRCPCETSPYVRYTSICYRWYTLQVWM-DVWVFSFSSLGRSTQESSTTTILLLSCVRVLH 162
           GR  C+   ++R TS+    +TL +   D +      L R    +   T +   CV ++ 
Sbjct: 116 GRIGCKVLSFIRLTSVGVSVFTLTILSADRYKAVVKPLERQPSNAILKTCVKAGCVWIVS 175

Query: 161 VIIN*LEFMVDLIIISNIYT 102
           +I     F +   I SN+YT
Sbjct: 176 MI-----FALPEAIFSNVYT 190

>SARM1_CAEEL (Q86DA5) Sterile alpha and TIR motif-containing protein tir-1|
           (Neuronal symmetry protein 2) (SARM1 homolog)
          Length = 1000

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 212 PELNVPTKKKKTPIHPSKPAEYTTGSIY 295
           P ++VP   K  P  P++PA  T G +Y
Sbjct: 110 PSISVPLPPKSAPPCPTQPAPLTNGDLY 137

>YICO_ECOLI (P31440) Inner membrane protein yicO|
          Length = 470

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 288 LPVVYSAGLDGCMGVFFFFVGTFNSGVEYNNNTTIVMCQSSPCYN*LIRVYGRF 127
           +P+    G+   +G+F   +G  N+GV   N  T+VM      +  L+ + G F
Sbjct: 167 IPLSLRIGITSGIGLFIALMGLKNTGVIVANKDTLVMIGDLSSHGVLLGILGFF 220

>YKA4_CAEEL (P34256) Hypothetical protein B0303.4|
          Length = 616

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 249 PYIHPNLQSIPPVAYTGISDVRRRLTRAP 335
           PY  P + ++PP+   G     RR  RAP
Sbjct: 416 PYTRPGIATLPPIVNNGFRRRPRRSVRAP 444

>YIEG_ECOLI (P31466) Inner membrane protein yieG|
          Length = 445

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -2

Query: 288 LPVVYSAGLDGCMGVFFFFVGTFNSGVEYNNNTTIVMCQSSPCYN*LIRVYGRF 127
           +PV    G+   +G+F   +G  N+GV   N  T+V   +   ++ L+ + G F
Sbjct: 140 IPVSLRVGITSGIGLFIGMMGLKNAGVIVANPETLVSIGNLTSHSVLLGILGFF 193

>BRS3_MACMU (Q6H2Y3) Bombesin receptor subtype-3 (BRS-3)|
          Length = 398

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = -3

Query: 338 GRCPCETSPYVRYTSICYRWYTLQVW-MDVWVFSFSSLGRSTQESSTTTILLLSCVRVLH 162
           GR  C+   ++R TS+    +TL +   D +      L R    +   T +   CV ++ 
Sbjct: 115 GRIGCKVLSFIRLTSVGVSVFTLTILSADRYKAVVKPLERQPSNAILKTCIKAGCVWIVS 174

Query: 161 VIIN*LEFMVDLIIISNIYT 102
           +I     F +   I SN+Y+
Sbjct: 175 MI-----FALPEAIFSNVYS 189


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,230,110
Number of Sequences: 219361
Number of extensions: 892884
Number of successful extensions: 2104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2103
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)