ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet71a02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF543198.1| Hordeum vulgare subsp. vulgare phosphate transpor... 644 0.0
2emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4,... 44 0.30
3emb|BX649355.3| Zebrafish DNA sequence from clone DKEYP-33C10 in... 44 0.30
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.30
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.30
6dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.30
7emb|AL732396.11| Mouse DNA sequence from clone RP23-93M14 on chr... 44 0.30
8gb|AC159421.1| Trypanosoma brucei chromosome 7 clone RPCI93-26A2... 42 1.2
9gb|AY376688.1| Crinipellis perniciosa mitochondrion, complete ge... 42 1.2
10gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence 42 1.2
11gb|AC150308.1| Latimeria menadoensis clone VMRC4-24C12, complete... 42 1.2
12emb|CR627485.10| Zebrafish DNA sequence from clone DKEY-203E10 i... 42 1.2
13emb|AL161535.2|ATCHRIV35 Arabidopsis thaliana DNA chromosome 4, ... 42 1.2
14emb|AL049640.1|ATT20K18 Arabidopsis thaliana DNA chromosome 4, B... 42 1.2
15emb|CR354383.8| Zebrafish DNA sequence from clone CH211-123O7 in... 42 1.2
16emb|CR354613.7| Zebrafish DNA sequence from clone CH211-112G7 in... 42 1.2
17gb|AC106734.3| Homo sapiens chromosome 16 clone CTD-2336H13, com... 42 1.2
18gb|AC171138.2| Helobdella robusta clone CH306-1A9, complete sequ... 42 1.2
19gb|AC113166.1| Homo sapiens chromosome 5 clone RP11-302K24, comp... 42 1.2
20emb|BX664714.16| Zebrafish DNA sequence from clone DKEY-204C3 in... 42 1.2
21gb|AC008558.7|AC008558 Homo sapiens chromosome 5 clone CTC-531G1... 42 1.2
22emb|AL929161.10| Zebrafish DNA sequence from clone CH211-93A19, ... 42 1.2
23dbj|AB007005.1| Cyprinus carpio Bf/C2B mRNA for complement facto... 42 1.2
24gb|AC120404.25| Mus musculus chromosome 6, clone RP24-405O23, co... 40 4.8
25gb|AE001415.2| Plasmodium falciparum 3D7 chromosome 2 section 52... 40 4.8
26gb|AC119899.8| Mus musculus chromosome 5, clone RP24-235E5, comp... 40 4.8
27gb|AC109283.8| Mus musculus chromosome 1, clone RP24-156F3, comp... 40 4.8
28gb|AC163033.4| Mus musculus BAC clone RP23-432F6 from chromosome... 40 4.8
29gb|AC153600.8| Mus musculus 6 BAC RP23-380C10 (Roswell Park Canc... 40 4.8
30emb|BX470177.14| Zebrafish DNA sequence from clone DKEY-31F3 in ... 40 4.8
31gb|AC146073.2| Pan troglodytes BAC clone RP43-15A16 from 7, comp... 40 4.8
32gb|AC115737.9| Mus musculus chromosome 3, clone RP23-473G18, com... 40 4.8
33gb|AC139748.12| Medicago truncatula clone mth2-15o24, complete s... 40 4.8
34emb|AL138684.11| Human DNA sequence from clone RP11-174H18 on ch... 40 4.8
35emb|AL031294.1|HS885E17 Human DNA sequence from clone RP5-885E17... 40 4.8
36emb|X91857.1|PSMANAGEN Piromyces sp. mRNA for mannanase A 40 4.8
37emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete... 40 4.8
38emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, comple... 40 4.8
39gb|AC119206.13| Mus musculus chromosome 5, clone RP24-189M4, com... 40 4.8
40emb|AL034557.8|PFMAL4P1 Plasmodium falciparum MAL4P1 40 4.8
41emb|AL645571.18| Mouse DNA sequence from clone RP23-39H1 on chro... 40 4.8
42emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 i... 40 4.8
43emb|BX901896.7| Zebrafish DNA sequence from clone DKEY-71L1 in l... 40 4.8
44emb|BX548001.17| Zebrafish DNA sequence from clone DKEY-231J9 in... 40 4.8
45gb|AC023688.4| Drosophila melanogaster X BAC RP98-42F7 (Roswell ... 40 4.8
46gb|AF190297.1|AF190297 Arabidopsis thaliana ecotype Columbia tra... 40 4.8
47gb|AC182464.2| Pan troglodytes BAC clone CH251-539C18 from chrom... 40 4.8
48gb|AC132380.6| Mus musculus BAC clone RP23-414A20 from chromosom... 40 4.8
49ref|NM_001020965.1| Schizosaccharomyces pombe 972h- hypothetical... 40 4.8
50gb|DQ059224.1| Acanthus sennii trnS-trnG intergenic spacer, part... 40 4.8
51gb|AC155328.5| Mus musculus 6 BAC RP24-75K10 (Roswell Park Cance... 40 4.8
52gb|AF090447.2| Zea mays 22 kDa alpha zein gene cluster, complete... 40 4.8
53gb|AC018460.2|AC018460 Arabidopsis thaliana chromosome I BAC F11... 40 4.8
54emb|BX004814.8| Zebrafish DNA sequence from clone CH211-103I6 in... 40 4.8
55emb|CR854929.8| Zebrafish DNA sequence from clone DKEY-14O4 in l... 40 4.8
56gb|AE003488.3| Drosophila melanogaster chromosome X, section 40 ... 40 4.8
57emb|AL355920.1|SPBC1683 Schizosaccharomyces pombe cosmids c1683 40 4.8
58gb|AC137764.6| Mus musculus chromosome 3, clone RP24-512E12, com... 40 4.8
59emb|BX001051.29| Zebrafish DNA sequence from clone DKEYP-68F9 in... 40 4.8
60emb|AL928600.8| Mouse DNA sequence from clone RP23-348O19 on chr... 40 4.8
61gb|U33010.1|SPU33010 Schizosaccharomyces pombe cosmids 359, 1198... 40 4.8
62gb|U33009.1|SPU33009 Schizosaccharomyces pombe cosmid 1683 40 4.8
63gb|AC155347.1| Brassica rapa subsp. pekinensis chromosome Cytoge... 40 4.8
64emb|AL590456.5| Human DNA sequence from clone RP11-298M2 on chro... 40 4.8
65emb|AL606509.6| Mouse DNA sequence from clone RP23-415B9 on chro... 40 4.8 
>gb|AF543198.1| Hordeum vulgare subsp. vulgare phosphate transporter 6 (Pht1-6) gene,
            complete cds
          Length = 2876

 Score =  644 bits (325), Expect = 0.0
 Identities = 341/345 (98%), Gaps = 1/345 (0%)
 Strand = Plus / Minus

                                                                        
Query: 14   ttcacttcatatgaattctgccctttaaataaacaaacttgcctcctctatgcatgaatg 73
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2831 ttcacttcatatgaattctgccctttaaataaacaaacttgcctcctctatgcatgaatg 2772

                                                                        
Query: 74   ctagctccgtccctggtattacctacgtagtatatatattactaataataattaaatcga 133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2771 ctagctccgtccctggtattacctacgtagtatatatattactaataataattaactcga 2712

                                                                        
Query: 134  ccataaactctaattaattaattataacatggagaactctgacacatgacaatagtagta 193
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2711 ccataaactctaattaattaattataacatggagaactctgacacatgacaatagtagta 2652

                                                                        
Query: 194  ttgttgttgtactcgactcctgagttgaacgtcccaacgaagaaaaagaaaacacccata 253
            |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2651 ttgttgttgtactc-actcctgagttgaacgtcccaaccaagaaaaagaaaacacccata 2593

                                                                        
Query: 254  catccatccaaacctgcagagtataccaccggtagcatatactggtatatctgacgtacg 313
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2592 catccatccaaacctgcagagtataccaccggtagcatatactagtatatctgacgtacg 2533

                                                         
Query: 314  gcgacgtctcacacgggcaccgtcctggcgtgcgtcgccggcgcc 358
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2532 gcgacgtctcacacgggcaccgtcctggcgtgcgtcgccggcgcc 2488
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>emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02,
             complete sequence
          Length = 173522

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 116   taataataattaaatcgaccat 137
             ||||||||||||||||||||||
Sbjct: 72818 taataataattaaatcgaccat 72797
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>emb|BX649355.3| Zebrafish DNA sequence from clone DKEYP-33C10 in linkage group 4
             Contains a novel gene and five CpG islands, complete
             sequence
          Length = 129928

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 106   tatatattactaataataattaaatc 131
             ||||||||||||| ||||||||||||
Sbjct: 35014 tatatattactaaaaataattaaatc 34989
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 116      taataataattaaatcgaccat 137
                ||||||||||||||||||||||
Sbjct: 27642189 taataataattaaatcgaccat 27642168
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 116      taataataattaaatcgaccat 137
                ||||||||||||||||||||||
Sbjct: 28367218 taataataattaaatcgaccat 28367197
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>dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0661G04
          Length = 157292

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 116   taataataattaaatcgaccat 137
             ||||||||||||||||||||||
Sbjct: 79796 taataataattaaatcgaccat 79775
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>emb|AL732396.11| Mouse DNA sequence from clone RP23-93M14 on chromosome X, complete
              sequence
          Length = 173254

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 235    gaaaaagaaaacacccatacat 256
              ||||||||||||||||||||||
Sbjct: 100423 gaaaaagaaaacacccatacat 100444
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>gb|AC159421.1| Trypanosoma brucei chromosome 7 clone RPCI93-26A24, complete sequence
          Length = 158050

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 233    aagaaaaagaaaacacccata 253
              |||||||||||||||||||||
Sbjct: 129907 aagaaaaagaaaacacccata 129927
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>gb|AY376688.1| Crinipellis perniciosa mitochondrion, complete genome
          Length = 109103

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 104   tatatatattactaataataa 124
             |||||||||||||||||||||
Sbjct: 29370 tatatatattactaataataa 29350
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>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence
          Length = 2205233

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 233     aagaaaaagaaaacacccata 253
               |||||||||||||||||||||
Sbjct: 1180216 aagaaaaagaaaacacccata 1180196
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>gb|AC150308.1| Latimeria menadoensis clone VMRC4-24C12, complete sequence
          Length = 150025

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 105    atatatattactaataataattaaa 129
              ||||||||||||||||||| |||||
Sbjct: 134595 atatatattactaataatatttaaa 134619
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>emb|CR627485.10| Zebrafish DNA sequence from clone DKEY-203E10 in linkage group 7,
             complete sequence
          Length = 180774

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 104   tatatatattactaataataa 124
             |||||||||||||||||||||
Sbjct: 74123 tatatatattactaataataa 74143
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>emb|AL161535.2|ATCHRIV35 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 35
          Length = 199280

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 143  ctaattaattaattataacat 163
            |||||||||||||||||||||
Sbjct: 9316 ctaattaattaattataacat 9336
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>emb|AL049640.1|ATT20K18 Arabidopsis thaliana DNA chromosome 4, BAC clone  T20K18 (ESSA project)
          Length = 79375

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 143   ctaattaattaattataacat 163
             |||||||||||||||||||||
Sbjct: 58811 ctaattaattaattataacat 58831
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>emb|CR354383.8| Zebrafish DNA sequence from clone CH211-123O7 in linkage group 21,
             complete sequence
          Length = 168569

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 249   ccatacatccatccaaacctg 269
             |||||||||||||||||||||
Sbjct: 10221 ccatacatccatccaaacctg 10201
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>emb|CR354613.7| Zebrafish DNA sequence from clone CH211-112G7 in linkage group 21,
             complete sequence
          Length = 179432

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 249   ccatacatccatccaaacctg 269
             |||||||||||||||||||||
Sbjct: 46583 ccatacatccatccaaacctg 46563
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>gb|AC106734.3| Homo sapiens chromosome 16 clone CTD-2336H13, complete sequence
          Length = 109765

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 142   tctaattaattaattataaca 162
             |||||||||||||||||||||
Sbjct: 45923 tctaattaattaattataaca 45943
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>gb|AC171138.2| Helobdella robusta clone CH306-1A9, complete sequence
          Length = 97729

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 141   ctctaattaattaattataac 161
             |||||||||||||||||||||
Sbjct: 36279 ctctaattaattaattataac 36299
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>gb|AC113166.1| Homo sapiens chromosome 5 clone RP11-302K24, complete sequence
          Length = 187279

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 107   atatattactaataataatta 127
             |||||||||||||||||||||
Sbjct: 39246 atatattactaataataatta 39266
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>emb|BX664714.16| Zebrafish DNA sequence from clone DKEY-204C3 in linkage group 7, complete
              sequence
          Length = 159633

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 116    taataataattaaatcgacca 136
              |||||||||||||||||||||
Sbjct: 134466 taataataattaaatcgacca 134446
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>gb|AC008558.7|AC008558 Homo sapiens chromosome 5 clone CTC-531G16, complete sequence
          Length = 210532

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 107   atatattactaataataatta 127
             |||||||||||||||||||||
Sbjct: 21317 atatattactaataataatta 21297
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>emb|AL929161.10| Zebrafish DNA sequence from clone CH211-93A19, complete sequence
          Length = 197027

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 116    taataataattaaatcgacca 136
              |||||||||||||||||||||
Sbjct: 155589 taataataattaaatcgacca 155569
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>dbj|AB007005.1| Cyprinus carpio Bf/C2B mRNA for complement factor B/C2B, complete cds
          Length = 3077

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 51   cttgcctcctctatgcatgaa 71
            |||||||||||||||||||||
Sbjct: 2215 cttgcctcctctatgcatgaa 2195
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>gb|AC120404.25| Mus musculus chromosome 6, clone RP24-405O23, complete sequence
          Length = 202146

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 104    tatatatattactaataata 123
              ||||||||||||||||||||
Sbjct: 114083 tatatatattactaataata 114064
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>gb|AE001415.2| Plasmodium falciparum 3D7 chromosome 2 section 52 of 73 of the
            complete sequence
          Length = 8636

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 108  tatattactaataataattaaatc 131
            ||||||||||| ||||||||||||
Sbjct: 3024 tatattactaaaaataattaaatc 3001
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>gb|AC119899.8| Mus musculus chromosome 5, clone RP24-235E5, complete sequence
          Length = 210751

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 149    aattaattataacatggagaactc 172
              ||||||||| ||||||||||||||
Sbjct: 170787 aattaattaaaacatggagaactc 170810
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>gb|AC109283.8| Mus musculus chromosome 1, clone RP24-156F3, complete sequence
          Length = 133845

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   atatatattactaataataa 124
             ||||||||||||||||||||
Sbjct: 28622 atatatattactaataataa 28641
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>gb|AC163033.4| Mus musculus BAC clone RP23-432F6 from chromosome 12, complete sequence
          Length = 201510

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   ctctaattaattaattataa 160
             ||||||||||||||||||||
Sbjct: 75517 ctctaattaattaattataa 75536
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>gb|AC153600.8| Mus musculus 6 BAC RP23-380C10 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 194848

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 105   atatatattactaataataattaa 128
             ||||||||||| ||||||||||||
Sbjct: 90800 atatatattacaaataataattaa 90777
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>emb|BX470177.14| Zebrafish DNA sequence from clone DKEY-31F3 in linkage group 3,
             complete sequence
          Length = 59444

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   aaaaagaaaacacccataca 255
             ||||||||||||||||||||
Sbjct: 51280 aaaaagaaaacacccataca 51261
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>gb|AC146073.2| Pan troglodytes BAC clone RP43-15A16 from 7, complete sequence
          Length = 138338

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   tggagaactctgacacatga 182
             ||||||||||||||||||||
Sbjct: 22370 tggagaactctgacacatga 22389
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>gb|AC115737.9| Mus musculus chromosome 3, clone RP23-473G18, complete sequence
          Length = 179034

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    taaataaacaaacttgcctc 58
             ||||||||||||||||||||
Sbjct: 29558 taaataaacaaacttgcctc 29577
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>gb|AC139748.12| Medicago truncatula clone mth2-15o24, complete sequence
          Length = 144217

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   attactaataataattaaat 130
             ||||||||||||||||||||
Sbjct: 96657 attactaataataattaaat 96638
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>emb|AL138684.11| Human DNA sequence from clone RP11-174H18 on chromosome 13, complete
             sequence
          Length = 45013

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    ctgccctttaaataaacaaa 50
             ||||||||||||||||||||
Sbjct: 18566 ctgccctttaaataaacaaa 18585
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>emb|AL031294.1|HS885E17 Human DNA sequence from clone RP5-885E17 on chromosome 1p33-34.1
             Contains the 5' end of a novel gene, complete sequence
          Length = 83957

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 228   caacgaagaaaaagaaaaca 247
             ||||||||||||||||||||
Sbjct: 12458 caacgaagaaaaagaaaaca 12477
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>emb|X91857.1|PSMANAGEN Piromyces sp. mRNA for mannanase A
          Length = 2336

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 105  atatatattactaataataa 124
            ||||||||||||||||||||
Sbjct: 2248 atatatattactaataataa 2267
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>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome
          Length = 1512977

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 108    tatattactaataataattaaatc 131
              ||||||||| ||||||||||||||
Sbjct: 644510 tatattactcataataattaaatc 644487
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>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome
          Length = 1516355

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 108    tatattactaataataattaaatc 131
              ||||||||| ||||||||||||||
Sbjct: 664665 tatattactcataataattaaatc 664642
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>gb|AC119206.13| Mus musculus chromosome 5, clone RP24-189M4, complete sequence
          Length = 168721

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 149   aattaattataacatggagaactc 172
             ||||||||| ||||||||||||||
Sbjct: 24743 aattaattaaaacatggagaactc 24766
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>emb|AL034557.8|PFMAL4P1 Plasmodium falciparum MAL4P1
          Length = 347582

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    tatatatattactaataata 123
              ||||||||||||||||||||
Sbjct: 106320 tatatatattactaataata 106339
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>emb|AL645571.18| Mouse DNA sequence from clone RP23-39H1 on chromosome 11 Contains a
              general transcription factor II A, 1 (Gtf2a1) pseudogene,
              the 3' end of the Pkd1l1 gene for polycystic kidney disease
              1 like 1 and a heterogeneous nuclear ribonucleoprotein A3
              (Hnrpa3) pseudogene, complete sequence
          Length = 235198

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 236    aaaaagaaaacacccataca 255
              ||||||||||||||||||||
Sbjct: 106194 aaaaagaaaacacccataca 106175
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>emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 in linkage group 3,
             complete sequence
          Length = 197042

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   aaaaagaaaacacccataca 255
             ||||||||||||||||||||
Sbjct: 23219 aaaaagaaaacacccataca 23238
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>emb|BX901896.7| Zebrafish DNA sequence from clone DKEY-71L1 in linkage group 5,
             complete sequence
          Length = 100093

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 109   atattactaataataattaaatcg 132
             ||||||||||||||||| ||||||
Sbjct: 57748 atattactaataataataaaatcg 57725
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>emb|BX548001.17| Zebrafish DNA sequence from clone DKEY-231J9 in linkage group 12,
             complete sequence
          Length = 100653

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    tttaaataaacaaacttgcc 56
             ||||||||||||||||||||
Sbjct: 54897 tttaaataaacaaacttgcc 54878
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>gb|AC023688.4| Drosophila melanogaster X BAC RP98-42F7 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 186714

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 105   atatatattactaataataattaa 128
             |||||||||| |||||||||||||
Sbjct: 65044 atatatattaataataataattaa 65067
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>gb|AF190297.1|AF190297 Arabidopsis thaliana ecotype Columbia transparent testa 1 (TT1) gene,
            complete cds
          Length = 11604

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  aaactctaattaattaatta 157
            ||||||||||||||||||||
Sbjct: 1892 aaactctaattaattaatta 1873
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>gb|AC182464.2| Pan troglodytes BAC clone CH251-539C18 from chromosome 20, complete
             sequence
          Length = 162793

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   tggagaactctgacacatga 182
             ||||||||||||||||||||
Sbjct: 38858 tggagaactctgacacatga 38877
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>gb|AC132380.6| Mus musculus BAC clone RP23-414A20 from chromosome 16, complete sequence
          Length = 198912

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 104    tatatatattactaataataatta 127
              |||||||||||| |||||||||||
Sbjct: 149541 tatatatattacaaataataatta 149564
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>ref|NM_001020965.1| Schizosaccharomyces pombe 972h- hypothetical protein
           (SPBC1683.03c), partial mRNA
          Length = 1560

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 103 gtatatatattactaataat 122
           ||||||||||||||||||||
Sbjct: 814 gtatatatattactaataat 833
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>gb|DQ059224.1| Acanthus sennii trnS-trnG intergenic spacer, partial sequence;
           chloroplast
          Length = 728

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 104 tatatatattactaataataatta 127
           ||||||||||| ||||||||||||
Sbjct: 411 tatatatattattaataataatta 388
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>gb|AC155328.5| Mus musculus 6 BAC RP24-75K10 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 216930

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 105    atatatattactaataataattaa 128
              ||||||||||| ||||||||||||
Sbjct: 173738 atatatattacaaataataattaa 173715
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>gb|AF090447.2| Zea mays 22 kDa alpha zein gene cluster, complete sequence
          Length = 346296

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   taattaattaattataacat 163
             ||||||||||||||||||||
Sbjct: 89680 taattaattaattataacat 89661
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>gb|AC018460.2|AC018460 Arabidopsis thaliana chromosome I BAC F11O6 genomic sequence, complete
             sequence
          Length = 110619

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   aaactctaattaattaatta 157
             ||||||||||||||||||||
Sbjct: 67878 aaactctaattaattaatta 67897
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>emb|BX004814.8| Zebrafish DNA sequence from clone CH211-103I6 in linkage group 1,
              complete sequence
          Length = 171710

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    atatatattactaataataa 124
              ||||||||||||||||||||
Sbjct: 111261 atatatattactaataataa 111242
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>emb|CR854929.8| Zebrafish DNA sequence from clone DKEY-14O4 in linkage group 10,
             complete sequence
          Length = 74434

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 105   atatatattactaataataattaa 128
             |||||||||| |||||||||||||
Sbjct: 30865 atatatattaataataataattaa 30842
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>gb|AE003488.3| Drosophila melanogaster chromosome X, section 40 of 74 of the complete
             sequence
          Length = 315134

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 105   atatatattactaataataattaa 128
             |||||||||| |||||||||||||
Sbjct: 21066 atatatattaataataataattaa 21043
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>emb|AL355920.1|SPBC1683 Schizosaccharomyces pombe cosmids c1683
          Length = 41799

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 103  gtatatatattactaataat 122
            ||||||||||||||||||||
Sbjct: 8194 gtatatatattactaataat 8175
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>gb|AC137764.6| Mus musculus chromosome 3, clone RP24-512E12, complete sequence
          Length = 148074

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     taaataaacaaacttgcctc 58
              ||||||||||||||||||||
Sbjct: 128834 taaataaacaaacttgcctc 128853
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>emb|BX001051.29| Zebrafish DNA sequence from clone DKEYP-68F9 in linkage group 9, complete
              sequence
          Length = 213486

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    taattaattaattataacat 163
              ||||||||||||||||||||
Sbjct: 162559 taattaattaattataacat 162578
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>emb|AL928600.8| Mouse DNA sequence from clone RP23-348O19 on chromosome 2, complete
             sequence
          Length = 129435

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   aattaattaattataacatg 164
             ||||||||||||||||||||
Sbjct: 55364 aattaattaattataacatg 55345
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>gb|U33010.1|SPU33010 Schizosaccharomyces pombe cosmids 359, 1198 and 1683
          Length = 85837

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   gtatatatattactaataat 122
             ||||||||||||||||||||
Sbjct: 25975 gtatatatattactaataat 25956
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>gb|U33009.1|SPU33009 Schizosaccharomyces pombe cosmid 1683
          Length = 39305

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 103  gtatatatattactaataat 122
            ||||||||||||||||||||
Sbjct: 5356 gtatatatattactaataat 5337
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>gb|AC155347.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1
             clone KBrH093K03, complete sequence
          Length = 78322

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   aattaattaattataacatg 164
             ||||||||||||||||||||
Sbjct: 56228 aattaattaattataacatg 56247
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>emb|AL590456.5| Human DNA sequence from clone RP11-298M2 on chromosome 6, complete
             sequence
          Length = 39938

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   tctaattaattaattataac 161
             ||||||||||||||||||||
Sbjct: 39290 tctaattaattaattataac 39309
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>emb|AL606509.6| Mouse DNA sequence from clone RP23-415B9 on chromosome 11, complete
              sequence
          Length = 197852

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    ataaactctaattaattaat 155
              ||||||||||||||||||||
Sbjct: 130693 ataaactctaattaattaat 130712


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,101,699
Number of Sequences: 3902068
Number of extensions: 5101699
Number of successful extensions: 193187
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 192735
Number of HSP's gapped (non-prelim): 451
length of query: 358
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 336
effective length of database: 17,147,199,772
effective search space: 5761459123392
effective search space used: 5761459123392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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