ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet70h04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M61146.1|BLYPSAL Hordeum vulgare photosystem I protein (PSI-L) mRNA, complete cds Length = 777 Score = 892 bits (450), Expect = 0.0 Identities = 453/454 (99%) Strand = Plus / Minus Query: 12 ttatgaggaatatgtaaaaattcatttatacatagaagactcgttcaggcaaccaccgag 71 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 772 ttatgaggaatatgtaaaaattcatttatacatagaagactcgttcaggcaaccaccgag 713 Query: 72 aagagatggcatgatctggagacatcgtacatgcatgccacctattaatctacttgaaga 131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 712 aagagatggcatgatctggagacatcgtacatgcatgccacctattaatctacttgaaga 653 Query: 132 agtatgggaggtcgagcacatagaggaggaagtatgcccagacggcgccggatacaccgc 191 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 652 agtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcgccggatacaccgc 593 Query: 192 cgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggagcttgtcggcct 251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 592 cgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggagcttgtcggcct 533 Query: 252 ccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgccctcgttgaagg 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 532 ccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgccctcgttgaagg 473 Query: 312 aggcgacgccgtacatggtgaggcagacgctgaggatggagacgagtccgatggcgccga 371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 472 aggcgacgccgtacatggtgaggcagacgctgaggatggagacgagtccgatggcgccga 413 Query: 372 gtgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtgagcgcgaaggggc 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 412 gtgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtgagcgcgaaggggc 353 Query: 432 cgacgaggaggtagccatgggcgaggccgacctc 465 |||||||||||||||||||||||||||||||||| Sbjct: 352 cgacgaggaggtagccatgggcgaggccgacctc 319
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 410 bits (207), Expect = e-111 Identities = 312/347 (89%) Strand = Plus / Minus Query: 119 atctacttgaagaagtatgggaggtcgagcacatagaggaggaagtatgcccagacggcg 178 ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| | || Sbjct: 13161383 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 13161324 Query: 179 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 238 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 13161323 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 13161264 Query: 239 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 298 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 13161263 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 13161204 Query: 299 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 358 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 13161203 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 13161144 Query: 359 ccgatggcgccgagtgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtg 418 || ||||||||| | ||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 13161143 cctgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtg 13161084 Query: 419 agcgcgaaggggccgacgaggaggtagccatgggcgaggccgacctc 465 ||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 13161083 agcgcgaagggcccgacgaggaggtagccgtgggcgaggccgacctc 13161037
>dbj|AK119162.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D08, full insert sequence Length = 923 Score = 410 bits (207), Expect = e-111 Identities = 312/347 (89%) Strand = Plus / Minus Query: 119 atctacttgaagaagtatgggaggtcgagcacatagaggaggaagtatgcccagacggcg 178 ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| | || Sbjct: 749 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 690 Query: 179 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 238 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 689 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 630 Query: 239 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 298 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 629 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 570 Query: 299 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 358 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 569 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 510 Query: 359 ccgatggcgccgagtgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtg 418 || ||||||||| | ||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 509 cctgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtg 450 Query: 419 agcgcgaaggggccgacgaggaggtagccatgggcgaggccgacctc 465 ||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 449 agcgcgaagggcccgacgaggaggtagccgtgggcgaggccgacctc 403
>dbj|AK099109.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F01, full insert sequence Length = 932 Score = 410 bits (207), Expect = e-111 Identities = 312/347 (89%) Strand = Plus / Minus Query: 119 atctacttgaagaagtatgggaggtcgagcacatagaggaggaagtatgcccagacggcg 178 ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| | || Sbjct: 699 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 640 Query: 179 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 238 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 639 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 580 Query: 239 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 298 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 579 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 520 Query: 299 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 358 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 519 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 460 Query: 359 ccgatggcgccgagtgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtg 418 || ||||||||| | ||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 459 cctgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtg 400 Query: 419 agcgcgaaggggccgacgaggaggtagccatgggcgaggccgacctc 465 ||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 399 agcgcgaagggcccgacgaggaggtagccgtgggcgaggccgacctc 353
>dbj|AK059750.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B01, full insert sequence Length = 985 Score = 410 bits (207), Expect = e-111 Identities = 312/347 (89%) Strand = Plus / Minus Query: 119 atctacttgaagaagtatgggaggtcgagcacatagaggaggaagtatgcccagacggcg 178 ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| | || Sbjct: 721 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 662 Query: 179 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 238 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 661 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 602 Query: 239 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 298 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 601 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 542 Query: 299 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 358 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 541 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 482 Query: 359 ccgatggcgccgagtgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtg 418 || ||||||||| | ||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 481 cctgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtg 422 Query: 419 agcgcgaaggggccgacgaggaggtagccatgggcgaggccgacctc 465 ||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 421 agcgcgaagggcccgacgaggaggtagccgtgggcgaggccgacctc 375
>dbj|AK058207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A09, full insert sequence Length = 923 Score = 410 bits (207), Expect = e-111 Identities = 312/347 (89%) Strand = Plus / Minus Query: 119 atctacttgaagaagtatgggaggtcgagcacatagaggaggaagtatgcccagacggcg 178 ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| | || Sbjct: 749 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 690 Query: 179 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 238 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 689 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 630 Query: 239 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 298 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 629 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 570 Query: 299 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 358 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 569 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 510 Query: 359 ccgatggcgccgagtgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtg 418 || ||||||||| | ||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 509 cctgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtg 450 Query: 419 agcgcgaaggggccgacgaggaggtagccatgggcgaggccgacctc 465 ||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 449 agcgcgaagggcccgacgaggaggtagccgtgggcgaggccgacctc 403
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 410 bits (207), Expect = e-111 Identities = 312/347 (89%) Strand = Plus / Minus Query: 119 atctacttgaagaagtatgggaggtcgagcacatagaggaggaagtatgcccagacggcg 178 ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| | || Sbjct: 13115658 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 13115599 Query: 179 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 238 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 13115598 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 13115539 Query: 239 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 298 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 13115538 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 13115479 Query: 299 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 358 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 13115478 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 13115419 Query: 359 ccgatggcgccgagtgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtg 418 || ||||||||| | ||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 13115418 cctgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtg 13115359 Query: 419 agcgcgaaggggccgacgaggaggtagccatgggcgaggccgacctc 465 ||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 13115358 agcgcgaagggcccgacgaggaggtagccgtgggcgaggccgacctc 13115312
>emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112_F01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 193499 Score = 410 bits (207), Expect = e-111 Identities = 312/347 (89%) Strand = Plus / Plus Query: 119 atctacttgaagaagtatgggaggtcgagcacatagaggaggaagtatgcccagacggcg 178 ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| | || Sbjct: 169359 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 169418 Query: 179 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 238 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 169419 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 169478 Query: 239 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 298 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 169479 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 169538 Query: 299 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 358 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 169539 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 169598 Query: 359 ccgatggcgccgagtgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtg 418 || ||||||||| | ||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 169599 cctgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtg 169658 Query: 419 agcgcgaaggggccgacgaggaggtagccatgggcgaggccgacctc 465 ||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 169659 agcgcgaagggcccgacgaggaggtagccgtgggcgaggccgacctc 169705
>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 178827 Score = 410 bits (207), Expect = e-111 Identities = 312/347 (89%) Strand = Plus / Minus Query: 119 atctacttgaagaagtatgggaggtcgagcacatagaggaggaagtatgcccagacggcg 178 ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| | || Sbjct: 150586 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 150527 Query: 179 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 238 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 150526 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 150467 Query: 239 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 298 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 150466 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 150407 Query: 299 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 358 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 150406 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 150347 Query: 359 ccgatggcgccgagtgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtg 418 || ||||||||| | ||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 150346 cctgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtg 150287 Query: 419 agcgcgaaggggccgacgaggaggtagccatgggcgaggccgacctc 465 ||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 150286 agcgcgaagggcccgacgaggaggtagccgtgggcgaggccgacctc 150240
>dbj|AK105154.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-F07, full insert sequence Length = 964 Score = 402 bits (203), Expect = e-109 Identities = 311/347 (89%) Strand = Plus / Minus Query: 119 atctacttgaagaagtatgggaggtcgagcacatagaggaggaagtatgcccagacggcg 178 ||||||||||||||||| ||||| |||||||| |||||||||||||| ||||||| | || Sbjct: 704 atctacttgaagaagtacgggagatcgagcacgtagaggaggaagtaggcccagaggacg 645 Query: 179 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 238 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 644 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 585 Query: 239 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 298 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 584 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 525 Query: 299 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 358 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 524 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 465 Query: 359 ccgatggcgccgagtgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtg 418 || ||||||||| | ||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 464 cctgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtg 405 Query: 419 agcgcgaaggggccgacgaggaggtagccatgggcgaggccgacctc 465 ||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 404 agcgcgaagggcccgacgaggaggtagccgtgggcgaggccgacctc 358
>gb|AY103985.1| Zea mays PCO103239 mRNA sequence Length = 1657 Score = 361 bits (182), Expect = 1e-96 Identities = 305/346 (88%) Strand = Plus / Minus Query: 120 tctacttgaagaagtatgggaggtcgagcacatagaggaggaagtatgcccagacggcgc 179 |||||||||||||||| |||||||||||||| |||||||| ||||| ||||||| ||| Sbjct: 1499 tctacttgaagaagtaggggaggtcgagcacgtagaggagaaagtaggcccagagcacgc 1440 Query: 180 cggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgga 239 |||| | |||||||||||||| || |||||||||| | ||| || ||||||||||| | Sbjct: 1439 cggagatgccgccgaagaagaaccccccggtgaacttggcccagccgtcggcggtctgca 1380 Query: 240 gcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgc 299 ||||||||||||||||||| | |||||||| |||||| ||||| |||||||| || | Sbjct: 1379 gcttgtcggcctccttcttcctgccggtgagcgtgagcgtgggcgccgtggacgggtccc 1320 Query: 300 cctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagtc 359 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct: 1319 cctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggc 1260 Query: 360 cgatggcgccgagtgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtga 419 || ||||||||| | ||||||||| ||||||||||||||| ||||||||||||| |||| Sbjct: 1259 cggcggcgccgagcgcgccggcctggccgtgcacgggcgtgctgcggagcgggcccgtga 1200 Query: 420 gcgcgaaggggccgacgaggaggtagccatgggcgaggccgacctc 465 |||||||||| || |||||||||||||| || |||||||||||||| Sbjct: 1199 gcgcgaagggccccacgaggaggtagccgtgcgcgaggccgacctc 1154
>emb|X57903.1|OS08RG10F O.sativa random single-copy DNA fragment 08RG108F Length = 162 Score = 69.9 bits (35), Expect = 7e-09 Identities = 51/55 (92%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 120 tctacttgaagaagtatgggaggtcgagc-acatagaggaggaagtatgcccaga 173 |||||||||||||||| |||||||||||| || |||||||||||||| ||||||| Sbjct: 109 tctacttgaagaagtacgggaggtcgagctacgtagaggaggaagtaggcccaga 55
>dbj|D50456.1|CUSPSAL Cucumis sativus mRNA for PsaL, complete cds Length = 812 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 118 aatctacttgaagaagtatgggaggtcgagcacatagaggaggaagtatgcccaga 173 ||||||||||| | |||| |||||||| | ||||||||||||||||||||||||| Sbjct: 737 aatctacttgacgtagtaagggaggtccaagacatagaggaggaagtatgcccaga 682
>dbj|D83007.1|CUSPSALG Cucumis sativus seedling cotyledon psaL mRNA for subunit of photosystem I, complete cds Length = 811 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 118 aatctacttgaagaagtatgggaggtcgagcacatagaggaggaagtatgcccaga 173 ||||||||||| | |||| |||||||| | ||||||||||||||||||||||||| Sbjct: 674 aatctacttgacgtagtaagggaggtccaagacatagaggaggaagtatgcccaga 619
>dbj|AB219568.1| Fragaria x ananassa FrPSI mRNA for photosystem I protein, partial cds Length = 404 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 226 ttcggcggtctggagcttgtcggcctccttcttgcgtccggt 267 ||||||||| ||||||| ||||| |||||||||||| ||||| Sbjct: 183 ttcggcggtttggagctggtcgggctccttcttgcggccggt 142
>emb|X64445.1|SOPSAL S.oleracea psaL mRNA for subunit XI of photosystem I reaction center Length = 834 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 179 ccggatacaccgccgaagaagaagcctccggtgaact 215 ||||| ||||| ||||||||||| ||||||||||||| Sbjct: 676 ccggaaacaccaccgaagaagaaccctccggtgaact 640
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 29 aaattcatttatacatagaaga 50 |||||||||||||||||||||| Sbjct: 5987801 aaattcatttatacatagaaga 5987780
>emb|AL662939.4|OSJN00143 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0013J13, complete sequence Length = 137572 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 29 aaattcatttatacatagaaga 50 |||||||||||||||||||||| Sbjct: 11198 aaattcatttatacatagaaga 11177
>emb|AL663018.4|OSJN00219 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0045O17, complete sequence Length = 137981 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 29 aaattcatttatacatagaaga 50 |||||||||||||||||||||| Sbjct: 131038 aaattcatttatacatagaaga 131017
>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold Length = 1996640 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 atatgtaaaaattcatttata 41 ||||||||||||||||||||| Sbjct: 41414 atatgtaaaaattcatttata 41394
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 cggagcgggccagtgagcgcg 424 ||||||||||||||||||||| Sbjct: 4178375 cggagcgggccagtgagcgcg 4178355
>gb|AC145409.3| Macropus eugenii clone ME_KBa-528O13, complete sequence Length = 140426 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 atatgtaaaaattcatttata 41 ||||||||||||||||||||| Sbjct: 41414 atatgtaaaaattcatttata 41394
>dbj|AB039379.1| Streptomyces aureofaciens tcsD, tcsE, tcsF, tcsG, genes for beta-ketoacyl synthase, beta-ketoacyl synthase2, acyl carrier protein, asparagine synthase homolog, complete cds Length = 5188 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 ccggcgcggtggacggctcgc 299 ||||||||||||||||||||| Sbjct: 2273 ccggcgcggtggacggctcgc 2293
>ref|NM_001037124.1| Danio rerio zgc:123341 (zgc:123341), mRNA Length = 1067 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 tgaggcagacgctgaggatg 349 |||||||||||||||||||| Sbjct: 297 tgaggcagacgctgaggatg 316
>gb|BT018644.1| Zea mays clone EL01N0505B01.d mRNA sequence Length = 1630 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 446 ccatgggcgaggccgacctc 465 |||||||||||||||||||| Sbjct: 977 ccatgggcgaggccgacctc 996
>gb|AC150702.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1356E08, complete sequence Length = 136853 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 gcgaaggggccgacgaggag 441 |||||||||||||||||||| Sbjct: 96226 gcgaaggggccgacgaggag 96245
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 attatgaggaatatgtaaaa 30 |||||||||||||||||||| Sbjct: 1463464 attatgaggaatatgtaaaa 1463483
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 attatgaggaatatgtaaaa 30 |||||||||||||||||||| Sbjct: 1439128 attatgaggaatatgtaaaa 1439147
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 attatgaggaatatgtaaaa 30 |||||||||||||||||||| Sbjct: 1439074 attatgaggaatatgtaaaa 1439093
>gb|AC109645.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0410D09, complete sequence Length = 43883 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 gcgaaggggccgacgaggag 441 |||||||||||||||||||| Sbjct: 5272 gcgaaggggccgacgaggag 5291
>gb|AC132454.3| Mus musculus BAC clone RP23-127P22 from chromosome 19, complete sequence Length = 225152 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 taaaaattcatttatacatagaag 49 ||||||||||||||| |||||||| Sbjct: 218092 taaaaattcatttatccatagaag 218069
>gb|AC124513.3| Mus musculus BAC clone RP23-448C3 from chromosome 19, complete sequence Length = 202236 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 taaaaattcatttatacatagaag 49 ||||||||||||||| |||||||| Sbjct: 11868 taaaaattcatttatccatagaag 11845
>gb|AC117192.3| Mus musculus BAC clone RP23-77A18 from 2, complete sequence Length = 161199 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 aatctacttgaagaagtatg 137 |||||||||||||||||||| Sbjct: 143165 aatctacttgaagaagtatg 143184
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 attatgaggaatatgtaaaa 30 |||||||||||||||||||| Sbjct: 1474081 attatgaggaatatgtaaaa 1474100
>emb|AL731538.4| Human DNA sequence from clone RP11-457G5 on chromosome 10 Contains part of the gene for alpha-catenin-like protein (MGC26194) (VR22), complete sequence Length = 163119 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tatgaggaatatgtaaaaat 32 |||||||||||||||||||| Sbjct: 64642 tatgaggaatatgtaaaaat 64661
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 ttcggcggtctggagcttgtcggc 249 |||||||| ||||||||||||||| Sbjct: 1174925 ttcggcggactggagcttgtcggc 1174948
>emb|AL023553.5|HS347H13 Human DNA sequence from clone RP3-347H13 on chromosome 22 Contains the 3' end of the ACO2 gene for mitochondrial aconitase 2, the gene for a novel protein similar to yeast DNA-directed RNA Polymerase III 25 kD Polypeptide, the gene for the human ortholog of rat Pippin, the PMM1 gene for phosphomannomutase 1 (PMMH-22, yeast SEC53 ortholog), and two novel genes. Contains ESTs, STSs, GSSs and two putative CpG islands, complete sequence Length = 107818 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 agaggaggaagtatgcccag 172 |||||||||||||||||||| Sbjct: 64984 agaggaggaagtatgcccag 65003
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 gccatgggcgaggccgacct 464 |||||||||||||||||||| Sbjct: 217167 gccatgggcgaggccgacct 217148
>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12 Length = 257701 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 gccatgggcgaggccgacct 464 |||||||||||||||||||| Sbjct: 215215 gccatgggcgaggccgacct 215196
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Length = 1010023 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 attaatctacttgaagaagt 134 |||||||||||||||||||| Sbjct: 781146 attaatctacttgaagaagt 781165
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ttatgaggaatatgtaaaaa 31 |||||||||||||||||||| Sbjct: 4009297 ttatgaggaatatgtaaaaa 4009316
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 gcgaaggggccgacgaggag 441 |||||||||||||||||||| Sbjct: 18238013 gcgaaggggccgacgaggag 18238032
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 atgaggaatatgtaaaaatt 33 |||||||||||||||||||| Sbjct: 24723095 atgaggaatatgtaaaaatt 24723114
>gb|AY826885.1| Heterocapsa triquetra clone HTPSAL1 chloroplast photosystem I subunit XI mRNA, complete cds; nuclear gene for chloroplast product Length = 1197 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 ggcgtgttgcggagcgggcc 414 |||||||||||||||||||| Sbjct: 911 ggcgtgttgcggagcgggcc 892
>dbj|AP002843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0407B12 Length = 148762 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 atgaggaatatgtaaaaatt 33 |||||||||||||||||||| Sbjct: 91672 atgaggaatatgtaaaaatt 91691
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ttatgaggaatatgtaaaaa 31 |||||||||||||||||||| Sbjct: 3949710 ttatgaggaatatgtaaaaa 3949729
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 attatgaggaatatgtaaaa 30 |||||||||||||||||||| Sbjct: 1439005 attatgaggaatatgtaaaa 1439024
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 gcgaaggggccgacgaggag 441 |||||||||||||||||||| Sbjct: 18396910 gcgaaggggccgacgaggag 18396929
>gb|BC107646.1| Danio rerio zgc:123341, mRNA (cDNA clone MGC:123341 IMAGE:7413031), complete cds Length = 1067 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 tgaggcagacgctgaggatg 349 |||||||||||||||||||| Sbjct: 297 tgaggcagacgctgaggatg 316
>gb|AC022002.5| Homo sapiens chromosome 3 clone RP11-198P17 map 3p, complete sequence Length = 189097 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 tcgtacatgcatgccaccta 115 |||||||||||||||||||| Sbjct: 81350 tcgtacatgcatgccaccta 81369
>emb|AL928659.16| Mouse DNA sequence from clone RP23-271B13 on chromosome 2, complete sequence Length = 209560 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 aatctacttgaagaagtatg 137 |||||||||||||||||||| Sbjct: 121761 aatctacttgaagaagtatg 121780 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,313,662 Number of Sequences: 3902068 Number of extensions: 3313662 Number of successful extensions: 61193 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60663 Number of HSP's gapped (non-prelim): 529 length of query: 465 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 443 effective length of database: 17,147,199,772 effective search space: 7596209498996 effective search space used: 7596209498996 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
