ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet70f07 |
|---|---|
| Clone Library Name | barley_pub |
>PSBP_WHEAT (Q00434) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 258 Score = 157 bits (398), Expect = 8e-39 Identities = 81/83 (97%), Positives = 81/83 (97%) Frame = -2 Query: 442 ESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQA 263 ESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQ Sbjct: 177 ESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQR 236 Query: 262 GDKRWFKGAKKFVENAAGSFSVA 194 DKRWFKGAKKFVENAAGSFSVA Sbjct: 237 -DKRWFKGAKKFVENAAGSFSVA 258
>PSBP_SPIOL (P12302) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 267 Score = 147 bits (370), Expect = 1e-35 Identities = 71/83 (85%), Positives = 76/83 (91%) Frame = -2 Query: 442 ESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQA 263 +S VA+ANVLESS PVVDGKQYYSITVLTRTADGDEGGKHQ+I ATV DGKLY+CKAQA Sbjct: 185 DSGVVASANVLESSTPVVDGKQYYSITVLTRTADGDEGGKHQVIAATVKDGKLYICKAQA 244 Query: 262 GDKRWFKGAKKFVENAAGSFSVA 194 GDKRWFKGAKKFVE+A SFSVA Sbjct: 245 GDKRWFKGAKKFVESATSSFSVA 267
>PSBP_PEA (P16059) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 259 Score = 145 bits (365), Expect = 6e-35 Identities = 68/83 (81%), Positives = 78/83 (93%) Frame = -2 Query: 442 ESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQA 263 +++AVA AN+LESSAPV+ GKQYY+I+VLTRTADGDEGGKHQLITATV DGKLY+CKAQA Sbjct: 177 DTNAVAVANILESSAPVIGGKQYYNISVLTRTADGDEGGKHQLITATVKDGKLYICKAQA 236 Query: 262 GDKRWFKGAKKFVENAAGSFSVA 194 GDKRWFKGA+KFVE+ A SFSVA Sbjct: 237 GDKRWFKGARKFVEDTASSFSVA 259
>PSBP_SOLTU (P93566) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 260 Score = 142 bits (358), Expect = 4e-34 Identities = 69/83 (83%), Positives = 76/83 (91%) Frame = -2 Query: 442 ESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQA 263 ES AVATAN+LE+S+ V GKQYY ++VLTRTADGDEGGKHQLITATV DGKLY+CKAQA Sbjct: 178 ESGAVATANLLEASSATVGGKQYYYLSVLTRTADGDEGGKHQLITATVNDGKLYICKAQA 237 Query: 262 GDKRWFKGAKKFVENAAGSFSVA 194 GDKRWFKGAKKFVENAA SFS+A Sbjct: 238 GDKRWFKGAKKFVENAATSFSIA 260
>PSBP_NARPS (Q40407) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 265 Score = 140 bits (353), Expect = 1e-33 Identities = 68/83 (81%), Positives = 74/83 (89%) Frame = -2 Query: 442 ESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQA 263 E +AV TAN+LE+S PVV GK YYSI VLTRTADGDEGGKH LITATV+DGKLY+CKAQA Sbjct: 183 EPNAVRTANILETSTPVVGGKDYYSIHVLTRTADGDEGGKHLLITATVSDGKLYICKAQA 242 Query: 262 GDKRWFKGAKKFVENAAGSFSVA 194 GDKRWFKGAKKFVE+AA SFS A Sbjct: 243 GDKRWFKGAKKFVESAASSFSAA 265
>PSBP_LYCES (P29795) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 258 Score = 139 bits (350), Expect = 3e-33 Identities = 67/83 (80%), Positives = 75/83 (90%) Frame = -2 Query: 442 ESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQA 263 ES AVAT N+LE+S+ V GK+YY ++VLTRTADGDEGGKHQLITATV DGKLY+CKAQA Sbjct: 176 ESGAVATRNLLEASSATVGGKEYYYLSVLTRTADGDEGGKHQLITATVNDGKLYICKAQA 235 Query: 262 GDKRWFKGAKKFVENAAGSFSVA 194 GDKRWFKGAKKFVENAA SFS+A Sbjct: 236 GDKRWFKGAKKFVENAATSFSIA 258
>PSBP_CUCSA (Q9SLQ8) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (OEC23) Length = 263 Score = 138 bits (348), Expect = 5e-33 Identities = 66/83 (79%), Positives = 75/83 (90%) Frame = -2 Query: 442 ESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQA 263 + DAVATAN+LE++A V+GK YY ++VLTRTADGDEGGKHQLITATV DGKLY+CKAQA Sbjct: 181 DPDAVATANILEATASNVNGKDYYFVSVLTRTADGDEGGKHQLITATVNDGKLYICKAQA 240 Query: 262 GDKRWFKGAKKFVENAAGSFSVA 194 GDKRWFKGA+KFVE AA SFSVA Sbjct: 241 GDKRWFKGARKFVEGAASSFSVA 263
>PSBP3_TOBAC (Q04127) Oxygen-evolving enhancer protein 2-3, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 266 Score = 137 bits (346), Expect = 9e-33 Identities = 66/83 (79%), Positives = 74/83 (89%) Frame = -2 Query: 442 ESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQA 263 ESDAVA ANVLE+S V GKQYY +++LTRTADG+EGGKHQL+TATV DGKLY+CKAQA Sbjct: 184 ESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQA 243 Query: 262 GDKRWFKGAKKFVENAAGSFSVA 194 GDKRWFKGAKKFVEN A SFS+A Sbjct: 244 GDKRWFKGAKKFVENTATSFSLA 266
>PSBP_FRIAG (O49080) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 264 Score = 137 bits (344), Expect = 2e-32 Identities = 64/83 (77%), Positives = 74/83 (89%) Frame = -2 Query: 442 ESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQA 263 + D+VATAN+LE S PVV GKQYY+I+VLTRTADGDEGGKH +I+ATV DGKLY+CKAQA Sbjct: 182 DPDSVATANILEVSTPVVGGKQYYNISVLTRTADGDEGGKHHVISATVTDGKLYICKAQA 241 Query: 262 GDKRWFKGAKKFVENAAGSFSVA 194 GDKRWFKGAKKFVE+ SF+VA Sbjct: 242 GDKRWFKGAKKFVESTTTSFNVA 264
>PSBP2_TOBAC (P18212) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 265 Score = 136 bits (343), Expect = 2e-32 Identities = 67/83 (80%), Positives = 74/83 (89%) Frame = -2 Query: 442 ESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQA 263 ESDAVA ANVLE+S+ V GK YY ++VLTRTADG+EGGKHQLITATV DGKLY+CKAQA Sbjct: 183 ESDAVAIANVLETSSAEVGGKPYYYLSVLTRTADGNEGGKHQLITATVNDGKLYICKAQA 242 Query: 262 GDKRWFKGAKKFVENAAGSFSVA 194 GDKRWFKGAKKFVEN A SFS+A Sbjct: 243 GDKRWFKGAKKFVENTATSFSLA 265
>PSBP1_TOBAC (Q7DM39) Oxygen-evolving enhancer protein 2-1, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 268 Score = 136 bits (342), Expect = 3e-32 Identities = 66/83 (79%), Positives = 75/83 (90%) Frame = -2 Query: 442 ESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQA 263 ES AVATAN+LE+S+ V GK+YY ++VLTRTADGDEGGKHQLI+ATV GKLY+CKAQA Sbjct: 186 ESGAVATANLLETSSSTVGGKEYYILSVLTRTADGDEGGKHQLISATVNGGKLYICKAQA 245 Query: 262 GDKRWFKGAKKFVENAAGSFSVA 194 GDKRWFKGA+KFVENAA SFSVA Sbjct: 246 GDKRWFKGARKFVENAATSFSVA 268
>PSBP2_ARATH (O49344) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 265 Score = 135 bits (340), Expect = 4e-32 Identities = 64/83 (77%), Positives = 75/83 (90%) Frame = -2 Query: 442 ESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQA 263 +++AVATAN+LE+S + GK+YY ++VLTRTADGDEGGKHQLITATV GKLY+CKAQA Sbjct: 183 DANAVATANILETSTQEIGGKEYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQA 242 Query: 262 GDKRWFKGAKKFVENAAGSFSVA 194 GDKRWFKGA+KFVENAA SFSVA Sbjct: 243 GDKRWFKGARKFVENAATSFSVA 265
>PSBP1_ARATH (Q42029) Oxygen-evolving enhancer protein 2-1, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 263 Score = 134 bits (337), Expect = 1e-31 Identities = 65/83 (78%), Positives = 75/83 (90%) Frame = -2 Query: 442 ESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQA 263 +++AVATAN+LESS+ V GK YY ++VLTRTADGDEGGKHQLITATV GKLY+CKAQA Sbjct: 181 DNNAVATANILESSSQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQA 240 Query: 262 GDKRWFKGAKKFVENAAGSFSVA 194 GDKRWFKGA+KFVE+AA SFSVA Sbjct: 241 GDKRWFKGARKFVESAATSFSVA 263
>PSBP_SINAL (P11594) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 260 Score = 129 bits (325), Expect = 2e-30 Identities = 63/83 (75%), Positives = 72/83 (86%) Frame = -2 Query: 442 ESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQA 263 +++AVATAN+LE++ V GK YY ++VLTRTADGDEGGKHQLITATV GKLY+CKAQA Sbjct: 178 DNNAVATANILETNIQDVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQA 237 Query: 262 GDKRWFKGAKKFVENAAGSFSVA 194 GDKRWFKGA KFVE AA SFSVA Sbjct: 238 GDKRWFKGANKFVEKAATSFSVA 260
>PSBP_BRAJU (Q96334) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (Fragment) Length = 217 Score = 126 bits (317), Expect = 2e-29 Identities = 62/83 (74%), Positives = 71/83 (85%) Frame = -2 Query: 442 ESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQA 263 +++AVATAN+LE++ V GK YY ++VLTRTAD DEGGKHQLITATV GKLY+CKAQA Sbjct: 135 DNNAVATANILETNIQDVGGKPYYYLSVLTRTADEDEGGKHQLITATVNGGKLYICKAQA 194 Query: 262 GDKRWFKGAKKFVENAAGSFSVA 194 GDKRWFKGA KFVE AA SFSVA Sbjct: 195 GDKRWFKGANKFVEKAATSFSVA 217
>PSBP_CHLRE (P11471) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) Length = 245 Score = 83.6 bits (205), Expect = 2e-16 Identities = 45/80 (56%), Positives = 55/80 (68%), Gaps = 2/80 (2%) Frame = -2 Query: 430 VATANVLESSAPV-VDGKQYYSITVLTRTADGDEGGKHQLITATV-ADGKLYVCKAQAGD 257 V+ A++L+ S GK YY +L R+ADGDEGG+HQLI ATV +D KLY+ K Q GD Sbjct: 165 VSAASLLDVSTTTDKKGKTYYKYELLVRSADGDEGGRHQLIGATVGSDNKLYIIKIQIGD 224 Query: 256 KRWFKGAKKFVENAAGSFSV 197 KRWFKGAKK A SF+V Sbjct: 225 KRWFKGAKKEAMGAFDSFTV 244
>MTP_PIG (Q865F1) Microsomal triglyceride transfer protein large subunit| precursor Length = 894 Score = 31.6 bits (70), Expect = 0.91 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = -2 Query: 367 ITVLTRTADGDEGGKHQLITATVADGKLYVCKAQAGDKRWFKGAK 233 + +L R+ DGD+ QLI T+ D K+ Q G+K FKG K Sbjct: 65 VVLLWRSPDGDDD---QLIQITIKDVKVENVNQQRGEKSIFKGKK 106
>NUOG_PSEFL (Q9KGW3) NADH-quinone oxidoreductase chain 3 (EC 1.6.99.5) (NADH| dehydrogenase I, chain G) (NDH-1, chain G) Length = 904 Score = 30.8 bits (68), Expect = 1.6 Identities = 21/66 (31%), Positives = 31/66 (46%) Frame = -2 Query: 427 ATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQAGDKRW 248 A A+ L++SAP VDG + + R AD K LI A + G + +A A + Sbjct: 456 AVAHALDASAPAVDGLDSEAAALAQRIADALLAAKRPLIIAGTSLGSKALIEAAANIAKA 515 Query: 247 FKGAKK 230 K +K Sbjct: 516 LKLREK 521
>NLAL1_ARATH (Q8VZT0) Putative H/ACA ribonucleoprotein complex subunit 1-like| protein 1 Length = 202 Score = 30.8 bits (68), Expect = 1.6 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Frame = +2 Query: 113 HACPGSVSTRCFPEEIP-LNSPIGHVYLCDTEGSCGVLDELLGALEPPLVSGLRLADVEL 289 HAC G T+ E+IP N+PI YL + + G +DE+ G + L S +++ + + Sbjct: 66 HACEGDAVTKLSQEKIPHFNAPI---YL-ENKTQIGKVDEIFGPINESLFS-IKMMEGIV 120 Query: 290 AVGDGGGDELVL 325 A GD+ + Sbjct: 121 ATSYSPGDKFFI 132
>MTP_BOVIN (P55156) Microsomal triglyceride transfer protein large subunit| precursor (Fragment) Length = 887 Score = 30.8 bits (68), Expect = 1.6 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = -2 Query: 367 ITVLTRTADGDEGGKHQLITATVADGKLYVCKAQAGDKRWFKGAK 233 + +L R+ DGD+ +QLI T+ D L Q G+K FKG K Sbjct: 58 VALLWRSPDGDD---NQLIQITMKDVNLENVNQQRGEKSIFKGKK 99
>TL30_ARATH (O49292) Thylakoid lumenal 29.8 kDa protein, chloroplast precursor| Length = 274 Score = 29.6 bits (65), Expect = 3.5 Identities = 22/73 (30%), Positives = 31/73 (42%) Frame = -2 Query: 415 VLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQAGDKRWFKGA 236 VL S+ DG+ YY + H LITAT A +LY+ +W K Sbjct: 211 VLSSNVAEHDGRLYYQFELEP---------PHVLITATAAGNRLYLFSVTGNGLQW-KRH 260 Query: 235 KKFVENAAGSFSV 197 K ++ A SF + Sbjct: 261 YKDLKRIASSFRI 273
>PHSL_DESBA (P13065) Periplasmic [NiFeSe] hydrogenase large subunit (EC| 1.12.99.6) (NiFeSe hydrogenlyase large chain) Length = 513 Score = 28.9 bits (63), Expect = 5.9 Identities = 21/56 (37%), Positives = 26/56 (46%) Frame = -2 Query: 409 ESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQAGDKRWFK 242 +++ P DGK SI LTR EG H I V DGK+ K G R F+ Sbjct: 2 QAATPAADGKVKISIDPLTRV----EG--HLKIEVEVKDGKVVDAKCSGGMFRGFE 51
>NUOG_ECOLI (P33602) NADH-quinone oxidoreductase chain G (EC 1.6.99.5) (NADH| dehydrogenase I, chain G) (NDH-1, chain G) (NUO7) Length = 907 Score = 28.5 bits (62), Expect = 7.7 Identities = 20/63 (31%), Positives = 29/63 (46%) Frame = -2 Query: 427 ATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQAGDKRW 248 A A+ L++SAP VDG + + + G K LI + G L V +A A + Sbjct: 459 AIAHALDNSAPAVDGIEPELQSKIDVIVQALAGAKKPLIISGTNAGSLEVIQAAANVAKA 518 Query: 247 FKG 239 KG Sbjct: 519 LKG 521
>NUOG_ECO57 (Q8XCX2) NADH-quinone oxidoreductase chain 3 (EC 1.6.99.5) (NADH| dehydrogenase I, chain G) (NDH-1, chain G) Length = 907 Score = 28.5 bits (62), Expect = 7.7 Identities = 20/63 (31%), Positives = 29/63 (46%) Frame = -2 Query: 427 ATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQAGDKRW 248 A A+ L++SAP VDG + + + G K LI + G L V +A A + Sbjct: 459 AIAHALDNSAPAVDGIEPELQSKIDVIVQALAGAKKPLIISGTNAGSLEVIQAAANVAKA 518 Query: 247 FKG 239 KG Sbjct: 519 LKG 521 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,426,100 Number of Sequences: 219361 Number of extensions: 1095505 Number of successful extensions: 2684 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2622 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2681 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
