ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet70f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 54 2e-07
2APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 42 0.001
3JHD2B_HUMAN (Q7LBC6) JmjC domain-containing histone demethylatio... 33 0.43
4JHD2B_MOUSE (Q6ZPY7) JmjC domain-containing histone demethylatio... 33 0.43
5TNR6B_HUMAN (O95407) Tumor necrosis factor receptor superfamily ... 30 2.1
6LBD13_ARATH (Q9AT61) LOB domain protein 13 30 2.8
7MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosi... 29 6.2
8CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor 28 8.1

>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = -3

Query: 440 NQRLVGMVDQFNRLLPGAHFTYINIDGIFSDILRAPGGHGLRVTXXXXXXXXXXXGQVTC 261
           N +L+ ++ Q ++ LP + F Y++I  I S +L  P  +G   T               C
Sbjct: 431 NSKLLLILGQLSKTLPNSTFVYMDIYTIISQMLETPAAYGFEETKKPCCKTGLLSAGALC 490

Query: 260 LPFQTP-CPNRNEYLFWDAFHPTEAA 186
               +  CPN + YLFWD  HPT+ A
Sbjct: 491 KKSTSKICPNTSSYLFWDGVHPTQRA 516



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>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = -3

Query: 440 NQRLVGMVDQFNRLLPGAHFTYINIDGIFSDILRAPGGHGLRVTXXXXXXXXXXXGQVTC 261
           N +LV ++ Q ++ LP +   Y +I  IFS +L +P  +G               G V C
Sbjct: 348 NSKLVIILGQLSKTLPNSTIVYGDIYSIFSKMLESPEDYGFEEIKKPCCKIGLTKGGVFC 407

Query: 260 LPFQTP-CPNRNEYLFWDAFHPTEAA 186
                    N + YLFWD  HP++ A
Sbjct: 408 KERTLKNMSNASSYLFWDGLHPSQRA 433



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>JHD2B_HUMAN (Q7LBC6) JmjC domain-containing histone demethylation protein 2B (EC|
            1.14.11.-) (Jumonji domain-containing protein 1B)
            (Nuclear protein 5qNCA)
          Length = 1761

 Score = 32.7 bits (73), Expect = 0.43
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 250  WNGRQVTCPLFRPTPQQPRLVTLRPWPPG 336
            W+G ++ C   R    QP ++ L+ WPPG
Sbjct: 1463 WDGFEIICKRLRSEDGQPMVLKLKDWPPG 1491



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>JHD2B_MOUSE (Q6ZPY7) JmjC domain-containing histone demethylation protein 2B (EC|
            1.14.11.-) (Jumonji domain-containing protein 1B)
          Length = 1562

 Score = 32.7 bits (73), Expect = 0.43
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 250  WNGRQVTCPLFRPTPQQPRLVTLRPWPPG 336
            W+G ++ C   R    QP ++ L+ WPPG
Sbjct: 1264 WDGFEIICKRLRSEDGQPMVLKLKDWPPG 1292



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>TNR6B_HUMAN (O95407) Tumor necrosis factor receptor superfamily member 6B|
           precursor (Decoy receptor for Fas ligand) (Decoy
           receptor 3) (DcR3) (M68)
          Length = 300

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 245 PCPNRNEYLFWDAFHPTEAANVLVGQRAYAARLASDVH 132
           PCP R+   FW+        NVL G+R   AR     H
Sbjct: 72  PCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATH 109



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>LBD13_ARATH (Q9AT61) LOB domain protein 13|
          Length = 268

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 286 PTPQQPRLVTLRPWPPGARRMSEKMPSMLM 375
           PTP+ PRL++ +P PP    +S   PSM++
Sbjct: 200 PTPRPPRLLSSQPAPPPTPPVSLPSPSMVV 229



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>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3530

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 112  RVLMSTG-CTSEASRAA*ALWPTSTLAASVGWKASQKRYSLRLGQGVWNGRQVTCPL 279
            R++ + G    + S AA  L PT      + W A+ ++ S+ L  G +NG Q +CP+
Sbjct: 2187 RLMQAMGRAQQQGSGAARTLPPTQ-----LEWTATYEKASMALDVGCFNGDQFSCPV 2238



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>CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor|
          Length = 1496

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 336 AGRPRPEGHQPGLLRRGAEQRAGHLPA--VPDALPQPQRVPLLG 211
           AG P P+G + G+  +GAE  AG+  A  +P  L  P    LLG
Sbjct: 767 AGTPGPKGDRGGIGEKGAEGTAGNDGAGGLPGPLGPPGPAGLLG 810


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,205,845
Number of Sequences: 219361
Number of extensions: 830144
Number of successful extensions: 2849
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2845
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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