ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet70e07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_466436.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1375 Score = 133 bits (67), Expect = 5e-28 Identities = 145/171 (84%) Strand = Plus / Minus Query: 240 gggctgcagccttgatatgtactcgtcatacaacctcgctgctccctccaaatcgccgag 299 |||||||| |||||||||||||| |||||||||| |||| |||| ||| | ||| || || Sbjct: 1076 gggctgcaaccttgatatgtacttgtcatacaacttcgccgctcgctctagatccccaag 1017 Query: 300 atcggcgcagcagtcggctatcgcgccgtaggcctcggtgcagccagaatcctcgccggt 359 || | | ||||||| ||||| |||||||||||||||||||| || ||||||||||| || Sbjct: 1016 ctccgtgtagcagtcagctatggcgccgtaggcctcggtgcacccggaatcctcgcccgt 957 Query: 360 ttcctttgatagcgccaggaccctgtagtaccagctcattgcttctctgta 410 |||||| || ||| ||||||| | ||||| ||| |||||||||||||||| Sbjct: 956 ttccttggaaagctccaggactttatagtagcagttcattgcttctctgta 906
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 133 bits (67), Expect = 5e-28 Identities = 145/171 (84%) Strand = Plus / Minus Query: 240 gggctgcagccttgatatgtactcgtcatacaacctcgctgctccctccaaatcgccgag 299 |||||||| |||||||||||||| |||||||||| |||| |||| ||| | ||| || || Sbjct: 22639102 gggctgcaaccttgatatgtacttgtcatacaacttcgccgctcgctctagatccccaag 22639043 Query: 300 atcggcgcagcagtcggctatcgcgccgtaggcctcggtgcagccagaatcctcgccggt 359 || | | ||||||| ||||| |||||||||||||||||||| || ||||||||||| || Sbjct: 22639042 ctccgtgtagcagtcagctatggcgccgtaggcctcggtgcacccggaatcctcgcccgt 22638983 Query: 360 ttcctttgatagcgccaggaccctgtagtaccagctcattgcttctctgta 410 |||||| || ||| ||||||| | ||||| ||| |||||||||||||||| Sbjct: 22638982 ttccttggaaagctccaggactttatagtagcagttcattgcttctctgta 22638932
>dbj|AP005644.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0056I22 Length = 147728 Score = 133 bits (67), Expect = 5e-28 Identities = 145/171 (84%) Strand = Plus / Minus Query: 240 gggctgcagccttgatatgtactcgtcatacaacctcgctgctccctccaaatcgccgag 299 |||||||| |||||||||||||| |||||||||| |||| |||| ||| | ||| || || Sbjct: 86913 gggctgcaaccttgatatgtacttgtcatacaacttcgccgctcgctctagatccccaag 86854 Query: 300 atcggcgcagcagtcggctatcgcgccgtaggcctcggtgcagccagaatcctcgccggt 359 || | | ||||||| ||||| |||||||||||||||||||| || ||||||||||| || Sbjct: 86853 ctccgtgtagcagtcagctatggcgccgtaggcctcggtgcacccggaatcctcgcccgt 86794 Query: 360 ttcctttgatagcgccaggaccctgtagtaccagctcattgcttctctgta 410 |||||| || ||| ||||||| | ||||| ||| |||||||||||||||| Sbjct: 86793 ttccttggaaagctccaggactttatagtagcagttcattgcttctctgta 86743
>dbj|AK069595.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024G02, full insert sequence Length = 1375 Score = 133 bits (67), Expect = 5e-28 Identities = 145/171 (84%) Strand = Plus / Minus Query: 240 gggctgcagccttgatatgtactcgtcatacaacctcgctgctccctccaaatcgccgag 299 |||||||| |||||||||||||| |||||||||| |||| |||| ||| | ||| || || Sbjct: 1076 gggctgcaaccttgatatgtacttgtcatacaacttcgccgctcgctctagatccccaag 1017 Query: 300 atcggcgcagcagtcggctatcgcgccgtaggcctcggtgcagccagaatcctcgccggt 359 || | | ||||||| ||||| |||||||||||||||||||| || ||||||||||| || Sbjct: 1016 ctccgtgtagcagtcagctatggcgccgtaggcctcggtgcacccggaatcctcgcccgt 957 Query: 360 ttcctttgatagcgccaggaccctgtagtaccagctcattgcttctctgta 410 |||||| || ||| ||||||| | ||||| ||| |||||||||||||||| Sbjct: 956 ttccttggaaagctccaggactttatagtagcagttcattgcttctctgta 906
>gb|BT016563.1| Zea mays clone Contig396 mRNA sequence Length = 1182 Score = 93.7 bits (47), Expect = 5e-16 Identities = 164/203 (80%) Strand = Plus / Minus Query: 235 tcgcggggctgcagccttgatatgtactcgtcatacaacctcgctgctccctccaaatcg 294 |||| |||||||||||| |||||||||| |||||||| | |||| |||| ||||| ||| Sbjct: 1018 tcgccgggctgcagcctcgatatgtacttgtcatacaccttcgccgctcgctccaggtcg 959 Query: 295 ccgagatcggcgcagcagtcggctatcgcgccgtaggcctcggtgcagccagaatcctcg 354 || || |||| | ||||||| ||||| || ||||||||||||||||| || ||||| || Sbjct: 958 cccagctcggtgtagcagtccgctatggcaccgtaggcctcggtgcaaccggaatcttca 899 Query: 355 ccggtttcctttgatagcgccaggaccctgtagtaccagctcattgcttctctgtactgt 414 || || ||||| || ||| |||| ||| || |||| ||||||||||||| ||||| Sbjct: 898 cctgtctccttggacagctccagaaccttgctgtactgtctcattgcttctcggtacttc 839 Query: 415 cccaacctttgcagtgatgcgcc 437 || | ||| ||||| |||||||| Sbjct: 838 ccgagcctctgcagcgatgcgcc 816
>gb|AY108049.1| Zea mays PCO078116 mRNA sequence Length = 1188 Score = 93.7 bits (47), Expect = 5e-16 Identities = 164/203 (80%) Strand = Plus / Minus Query: 235 tcgcggggctgcagccttgatatgtactcgtcatacaacctcgctgctccctccaaatcg 294 |||| |||||||||||| |||||||||| |||||||| | |||| |||| ||||| ||| Sbjct: 1054 tcgccgggctgcagcctcgatatgtacttgtcatacaccttcgccgctcgctccaggtcg 995 Query: 295 ccgagatcggcgcagcagtcggctatcgcgccgtaggcctcggtgcagccagaatcctcg 354 || || |||| | ||||||| ||||| || ||||||||||||||||| || ||||| || Sbjct: 994 cccagctcggtgtagcagtccgctatggcaccgtaggcctcggtgcaaccggaatcttca 935 Query: 355 ccggtttcctttgatagcgccaggaccctgtagtaccagctcattgcttctctgtactgt 414 || || ||||| || ||| |||| ||| || |||| ||||||||||||| ||||| Sbjct: 934 cctgtctccttggacagctccagaaccttgctgtactgtctcattgcttctcggtacttc 875 Query: 415 cccaacctttgcagtgatgcgcc 437 || | ||| ||||| |||||||| Sbjct: 874 ccgagcctctgcagcgatgcgcc 852
>gb|AC016623.6| Homo sapiens chromosome 5 clone CTD-2345N17, complete sequence Length = 153823 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 aagttaaaagacaagcaaaat 100 ||||||||||||||||||||| Sbjct: 40431 aagttaaaagacaagcaaaat 40451
>gb|AC073536.5| Homo sapiens chromosome 5 clone CTD-2068E4, complete sequence Length = 116993 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 aagttaaaagacaagcaaaat 100 ||||||||||||||||||||| Sbjct: 37486 aagttaaaagacaagcaaaat 37506
>gb|AC093767.2| Homo sapiens BAC clone RP11-107E21 from 4, complete sequence Length = 149505 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 36 aagtagagagggccacctaat 56 ||||||||||||||||||||| Sbjct: 8461 aagtagagagggccacctaat 8441
>emb|CT009620.9| Zebrafish DNA sequence from clone CH73-187F10 in linkage group 6, complete sequence Length = 95528 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 tctgtactgtcccaaccttt 424 |||||||||||||||||||| Sbjct: 39786 tctgtactgtcccaaccttt 39805
>gb|AC147133.2| Pan troglodytes BAC clone CH251-372A19 from Y, complete sequence Length = 192074 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 cctgtagtaccagctcattg 400 |||||||||||||||||||| Sbjct: 141909 cctgtagtaccagctcattg 141890
>emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete chromosome; segment 10/12 Length = 340900 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 ctatcgcgccgtaggcctcg 336 |||||||||||||||||||| Sbjct: 143350 ctatcgcgccgtaggcctcg 143331
>emb|AL592494.4| Human DNA sequence from clone RP11-344P13 on chromosome 1 Contains a novel gene, a embigin (Emb) (MGC71745) pseudogene, a mitochondrial translational initiation factor 2 (MTIF2) pseudogene, a novel gene, the 3' end of a novel gene and two CpG islands, complete sequence Length = 165908 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 gggctgcagccttgatatgt 259 |||||||||||||||||||| Sbjct: 139311 gggctgcagccttgatatgt 139292
>emb|AL159974.21| Human DNA sequence from clone RP11-255E21 on chromosome 13 Contains the 3' end of the C13orf10 gene for chromosome 13 open reading frame 10, complete sequence Length = 165326 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 78 ccaagttaaaagacaagcaaaatc 101 ||||||||||| |||||||||||| Sbjct: 121164 ccaagttaaaaaacaagcaaaatc 121141
>emb|AL139145.9| Human DNA sequence from clone RP4-579A20 on chromosome 1p32.1-32.3, complete sequence Length = 38892 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 attgcttctctgtactgtcc 416 |||||||||||||||||||| Sbjct: 30801 attgcttctctgtactgtcc 30820
>dbj|BS000646.3| Pan troglodytes chromosome Y clone: PTB-569F12, complete sequence Length = 225175 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 cctgtagtaccagctcattg 400 |||||||||||||||||||| Sbjct: 219796 cctgtagtaccagctcattg 219777
>dbj|BS000642.2| Pan troglodytes chromosome Y clone: PTB-307G08, complete sequence Length = 162472 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 cctgtagtaccagctcattg 400 |||||||||||||||||||| Sbjct: 11296 cctgtagtaccagctcattg 11277
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 cctgtagtaccagctcattg 400 |||||||||||||||||||| Sbjct: 18896110 cctgtagtaccagctcattg 18896129
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 330 ggcctcggtgcagccagaatcctcgccg 357 ||||||||||||||| |||| ||||||| Sbjct: 4783643 ggcctcggtgcagccggaatgctcgccg 4783670
>gb|AC146450.5| Pan troglodytes BAC clone clone CH251-552K12 from y, complete sequence Length = 172072 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 cctgtagtaccagctcattg 400 |||||||||||||||||||| Sbjct: 57390 cctgtagtaccagctcattg 57371
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 296 cgagatcggcgcagcagtcggcta 319 |||||||||||||||| ||||||| Sbjct: 4056748 cgagatcggcgcagcactcggcta 4056725
>gb|AC006371.2|AC006371 Homo sapiens BAC clone RP11-304C24 from Y, complete sequence Length = 202354 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 cctgtagtaccagctcattg 400 |||||||||||||||||||| Sbjct: 91195 cctgtagtaccagctcattg 91214
>gb|AC102839.24| Mus musculus chromosome 5, clone RP24-343D8, complete sequence Length = 196090 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 gccagatagcaagcaagcaa 133 |||||||||||||||||||| Sbjct: 75301 gccagatagcaagcaagcaa 75282
>gb|AC006500.4|AC006500 Homo sapiens, clone hRPK.31_A_1, complete sequence Length = 147699 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 attgcttctctgtactgtcc 416 |||||||||||||||||||| Sbjct: 112237 attgcttctctgtactgtcc 112218 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,043,952 Number of Sequences: 3902068 Number of extensions: 3043952 Number of successful extensions: 53659 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53486 Number of HSP's gapped (non-prelim): 167 length of query: 437 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 415 effective length of database: 17,147,199,772 effective search space: 7116087905380 effective search space used: 7116087905380 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
