| Clone Name | rbaet70d05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009343.1| Triticum aestivum clone wlm4.pk0021.h10:fis, full insert mRNA sequence Length = 1639 Score = 515 bits (260), Expect = e-143 Identities = 379/417 (90%), Gaps = 10/417 (2%) Strand = Plus / Minus Query: 68 caccatacataaacgtttgtaccaaaccatgaaaaattcaaaagccattattcacagttg 127 ||||| |||||||| |||||||||||||| | ||| |||||||||||||||||||||| | Sbjct: 1549 caccacacataaacatttgtaccaaacca-gcaaatttcaaaagccattattcacagtag 1491 Query: 128 caaaaatagaataaaatcacacgatcgttcgatcattcacgcattcacaaactaattaac 187 ||||||| | |||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct: 1490 taaaaataaataaaaatcacacgatcgttcaatcattcacgtattcacaaactaattaac 1431 Query: 188 ccctttaaagcatgcagggagaaacttgcttcctctgaccttctt---gccttgatcctc 244 ||||| |||||||||||||||||||||| |||| ||| |||||| |||| ||||||| Sbjct: 1430 cccttgaaagcatgcagggagaaacttggttcccctggtcttcttcttgcctagatcctc 1371 Query: 245 tgctatcttgggctccttactgctaggagtggtggtggcagcgacatcgtcgtcgatgat 304 || |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1370 tggtatcttgggctccttactgctaa------tggtggcagcgacatcgtcgtcgatgac 1317 Query: 305 cttcccgttgacgaccggtgggacgggcaagttctcctcagagggctcctcgagctccca 364 ||||||| | |||||||| |||||||||||||||||||||| ||||| ||| |||||||| Sbjct: 1316 cttcccggtcacgaccggcgggacgggcaagttctcctcagcgggctgctccagctccca 1257 Query: 365 ctcaccagttggccccagcaccatccccttgttcctctccacccaccacgactccggcac 424 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1256 ctcaccagttggccccagcaccatccccttgttcctttccacccaccacgactccggcac 1197 Query: 425 aaggttgtcatccttgaggaaggcggacgacttgttcaccagcgccacgctccggtt 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1196 gaggttgtcatccttgaggaaggcggacgacttgttcaccagcgccacgctccggtt 1140
>ref|NM_191700.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1371 Score = 165 bits (83), Expect = 2e-37 Identities = 167/195 (85%) Strand = Plus / Minus Query: 281 ggcagcgacatcgtcgtcgatgatcttcccgttgacgaccggtgggacgggcaagttctc 340 ||||||||| ||||||||||||||||||||| | || |||||||| ||||||| |||||| Sbjct: 1278 ggcagcgacgtcgtcgtcgatgatcttcccggtcaccaccggtggcacgggcaggttctc 1219 Query: 341 ctcagagggctcctcgagctcccactcaccagttggccccagcaccatccccttgttcct 400 ||| | |||| ||||||||| ||| || || | | || |||||||| || |||||||| Sbjct: 1218 ctctgcgggcccctcgagctgccattccccgttctggccgagcaccatgcctttgttcct 1159 Query: 401 ctccacccaccacgactccggcacaaggttgtcatccttgaggaaggcggacgacttgtt 460 |||||||||||| |||||||||||||||||| |||||||||||| || ||||||||| Sbjct: 1158 ctccacccaccatgactccggcacaaggttgctgtccttgaggaagccgctcgacttgtt 1099 Query: 461 caccagcgccacgct 475 ||||||||| ||||| Sbjct: 1098 caccagcgcgacgct 1084
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 165 bits (83), Expect = 2e-37 Identities = 167/195 (85%) Strand = Plus / Plus Query: 281 ggcagcgacatcgtcgtcgatgatcttcccgttgacgaccggtgggacgggcaagttctc 340 ||||||||| ||||||||||||||||||||| | || |||||||| ||||||| |||||| Sbjct: 29524637 ggcagcgacgtcgtcgtcgatgatcttcccggtcaccaccggtggcacgggcaggttctc 29524696 Query: 341 ctcagagggctcctcgagctcccactcaccagttggccccagcaccatccccttgttcct 400 ||| | |||| ||||||||| ||| || || | | || |||||||| || |||||||| Sbjct: 29524697 ctctgcgggcccctcgagctgccattccccgttctggccgagcaccatgcctttgttcct 29524756 Query: 401 ctccacccaccacgactccggcacaaggttgtcatccttgaggaaggcggacgacttgtt 460 |||||||||||| |||||||||||||||||| |||||||||||| || ||||||||| Sbjct: 29524757 ctccacccaccatgactccggcacaaggttgctgtccttgaggaagccgctcgacttgtt 29524816 Query: 461 caccagcgccacgct 475 ||||||||| ||||| Sbjct: 29524817 caccagcgcgacgct 29524831 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 382 gcaccatccccttgttcctctccacccaccacgactccggcac 424 ||||||| ||||||||| ||||||||||||||| | ||||||| Sbjct: 26317786 gcaccatgcccttgttcttctccacccaccacgccgccggcac 26317744 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 acttgttcaccagcgccacg 473 |||||||||||||||||||| Sbjct: 26296029 acttgttcaccagcgccacg 26296010
>dbj|AP002901.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456F08 Length = 156850 Score = 165 bits (83), Expect = 2e-37 Identities = 167/195 (85%) Strand = Plus / Plus Query: 281 ggcagcgacatcgtcgtcgatgatcttcccgttgacgaccggtgggacgggcaagttctc 340 ||||||||| ||||||||||||||||||||| | || |||||||| ||||||| |||||| Sbjct: 90911 ggcagcgacgtcgtcgtcgatgatcttcccggtcaccaccggtggcacgggcaggttctc 90970 Query: 341 ctcagagggctcctcgagctcccactcaccagttggccccagcaccatccccttgttcct 400 ||| | |||| ||||||||| ||| || || | | || |||||||| || |||||||| Sbjct: 90971 ctctgcgggcccctcgagctgccattccccgttctggccgagcaccatgcctttgttcct 91030 Query: 401 ctccacccaccacgactccggcacaaggttgtcatccttgaggaaggcggacgacttgtt 460 |||||||||||| |||||||||||||||||| |||||||||||| || ||||||||| Sbjct: 91031 ctccacccaccatgactccggcacaaggttgctgtccttgaggaagccgctcgacttgtt 91090 Query: 461 caccagcgccacgct 475 ||||||||| ||||| Sbjct: 91091 caccagcgcgacgct 91105
>dbj|AK106129.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F09, full insert sequence Length = 1810 Score = 165 bits (83), Expect = 2e-37 Identities = 167/195 (85%) Strand = Plus / Minus Query: 281 ggcagcgacatcgtcgtcgatgatcttcccgttgacgaccggtgggacgggcaagttctc 340 ||||||||| ||||||||||||||||||||| | || |||||||| ||||||| |||||| Sbjct: 1386 ggcagcgacgtcgtcgtcgatgatcttcccggtcaccaccggtggcacgggcaggttctc 1327 Query: 341 ctcagagggctcctcgagctcccactcaccagttggccccagcaccatccccttgttcct 400 ||| | |||| ||||||||| ||| || || | | || |||||||| || |||||||| Sbjct: 1326 ctctgcgggcccctcgagctgccattccccgttctggccgagcaccatgcctttgttcct 1267 Query: 401 ctccacccaccacgactccggcacaaggttgtcatccttgaggaaggcggacgacttgtt 460 |||||||||||| |||||||||||||||||| |||||||||||| || ||||||||| Sbjct: 1266 ctccacccaccatgactccggcacaaggttgctgtccttgaggaagccgctcgacttgtt 1207 Query: 461 caccagcgccacgct 475 ||||||||| ||||| Sbjct: 1206 caccagcgcgacgct 1192
>dbj|AK104373.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F02, full insert sequence Length = 1810 Score = 165 bits (83), Expect = 2e-37 Identities = 167/195 (85%) Strand = Plus / Minus Query: 281 ggcagcgacatcgtcgtcgatgatcttcccgttgacgaccggtgggacgggcaagttctc 340 ||||||||| ||||||||||||||||||||| | || |||||||| ||||||| |||||| Sbjct: 1386 ggcagcgacgtcgtcgtcgatgatcttcccggtcaccaccggtggcacgggcaggttctc 1327 Query: 341 ctcagagggctcctcgagctcccactcaccagttggccccagcaccatccccttgttcct 400 ||| | |||| ||||||||| ||| || || | | || |||||||| || |||||||| Sbjct: 1326 ctctgcgggcccctcgagctgccattccccgttctggccgagcaccatgcctttgttcct 1267 Query: 401 ctccacccaccacgactccggcacaaggttgtcatccttgaggaaggcggacgacttgtt 460 |||||||||||| |||||||||||||||||| |||||||||||| || ||||||||| Sbjct: 1266 ctccacccaccatgactccggcacaaggttgctgtccttgaggaagccgctcgacttgtt 1207 Query: 461 caccagcgccacgct 475 ||||||||| ||||| Sbjct: 1206 caccagcgcgacgct 1192
>dbj|AK098952.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013055J12, full insert sequence Length = 1805 Score = 165 bits (83), Expect = 2e-37 Identities = 167/195 (85%) Strand = Plus / Minus Query: 281 ggcagcgacatcgtcgtcgatgatcttcccgttgacgaccggtgggacgggcaagttctc 340 ||||||||| ||||||||||||||||||||| | || |||||||| ||||||| |||||| Sbjct: 1385 ggcagcgacgtcgtcgtcgatgatcttcccggtcaccaccggtggcacgggcaggttctc 1326 Query: 341 ctcagagggctcctcgagctcccactcaccagttggccccagcaccatccccttgttcct 400 ||| | |||| ||||||||| ||| || || | | || |||||||| || |||||||| Sbjct: 1325 ctctgcgggcccctcgagctgccattccccgttctggccgagcaccatgcctttgttcct 1266 Query: 401 ctccacccaccacgactccggcacaaggttgtcatccttgaggaaggcggacgacttgtt 460 |||||||||||| |||||||||||||||||| |||||||||||| || ||||||||| Sbjct: 1265 ctccacccaccatgactccggcacaaggttgctgtccttgaggaagccgctcgacttgtt 1206 Query: 461 caccagcgccacgct 475 ||||||||| ||||| Sbjct: 1205 caccagcgcgacgct 1191
>dbj|AK069577.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022J10, full insert sequence Length = 1921 Score = 165 bits (83), Expect = 2e-37 Identities = 167/195 (85%) Strand = Plus / Minus Query: 281 ggcagcgacatcgtcgtcgatgatcttcccgttgacgaccggtgggacgggcaagttctc 340 ||||||||| ||||||||||||||||||||| | || |||||||| ||||||| |||||| Sbjct: 1386 ggcagcgacgtcgtcgtcgatgatcttcccggtcaccaccggtggcacgggcaggttctc 1327 Query: 341 ctcagagggctcctcgagctcccactcaccagttggccccagcaccatccccttgttcct 400 ||| | |||| ||||||||| ||| || || | | || |||||||| || |||||||| Sbjct: 1326 ctctgcgggcccctcgagctgccattccccgttctggccgagcaccatgcctttgttcct 1267 Query: 401 ctccacccaccacgactccggcacaaggttgtcatccttgaggaaggcggacgacttgtt 460 |||||||||||| |||||||||||||||||| |||||||||||| || ||||||||| Sbjct: 1266 ctccacccaccatgactccggcacaaggttgctgtccttgaggaagccgctcgacttgtt 1207 Query: 461 caccagcgccacgct 475 ||||||||| ||||| Sbjct: 1206 caccagcgcgacgct 1192
>ref|NM_192379.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1263 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 382 gcaccatccccttgttcctctccacccaccacgactccggcac 424 ||||||| ||||||||| ||||||||||||||| | ||||||| Sbjct: 1204 gcaccatgcccttgttcttctccacccaccacgccgccggcac 1162
>dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1159_D09 Length = 147770 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 382 gcaccatccccttgttcctctccacccaccacgactccggcac 424 ||||||| ||||||||| ||||||||||||||| | ||||||| Sbjct: 130467 gcaccatgcccttgttcttctccacccaccacgccgccggcac 130425 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 acttgttcaccagcgccacg 473 |||||||||||||||||||| Sbjct: 108710 acttgttcaccagcgccacg 108691
>dbj|AK102737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106C14, full insert sequence Length = 1577 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 382 gcaccatccccttgttcctctccacccaccacgactccggcac 424 ||||||| ||||||||| ||||||||||||||| | ||||||| Sbjct: 1336 gcaccatgcccttgttcttctccacccaccacgccgccggcac 1294
>gb|AC105773.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1562_H01, complete sequence Length = 88352 Score = 48.1 bits (24), Expect = 0.027 Identities = 33/36 (91%) Strand = Plus / Plus Query: 435 tccttgaggaaggcggacgacttgttcaccagcgcc 470 |||||||||||| || ||| |||||||||||||||| Sbjct: 42205 tccttgaggaagtcgcacgccttgttcaccagcgcc 42240
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 48.1 bits (24), Expect = 0.027 Identities = 33/36 (91%) Strand = Plus / Plus Query: 435 tccttgaggaaggcggacgacttgttcaccagcgcc 470 |||||||||||| || ||| |||||||||||||||| Sbjct: 18736802 tccttgaggaagtcgcacgccttgttcaccagcgcc 18736837
>gb|AF181895.6| Homo sapiens chromosome 8 clone CTD-2329M5 map p12, complete sequence Length = 109545 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 89 ccaaaccatgaaaaattcaaa 109 ||||||||||||||||||||| Sbjct: 105109 ccaaaccatgaaaaattcaaa 105129
>gb|AC011352.6| Homo sapiens chromosome 5 clone CTC-327F10, complete sequence Length = 166644 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 ttgcaaaaatagaataaaatc 145 ||||||||||||||||||||| Sbjct: 82936 ttgcaaaaatagaataaaatc 82916
>emb|AL663071.5| Mouse DNA sequence from clone RP23-446K7 on chromosome 11, complete sequence Length = 205845 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 tgaaccaccaccatacataaa 80 ||||||||||||||||||||| Sbjct: 117441 tgaaccaccaccatacataaa 117421
>gb|AC113209.4| Homo sapiens chromosome 8, clone RP11-1002K11, complete sequence Length = 193991 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 ccaaaccatgaaaaattcaaa 109 ||||||||||||||||||||| Sbjct: 180614 ccaaaccatgaaaaattcaaa 180594
>gb|AC103675.2| Homo sapiens chromosome 8, clone CTD-2329M5, complete sequence Length = 109550 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 89 ccaaaccatgaaaaattcaaa 109 ||||||||||||||||||||| Sbjct: 105113 ccaaaccatgaaaaattcaaa 105133
>ref|XM_687218.1| PREDICTED: Danio rerio similar to LOC553425 protein (LOC563852), partial mRNA Length = 1435 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 accttcttgccttgatcctct 245 ||||||||||||||||||||| Sbjct: 452 accttcttgccttgatcctct 432
>tpg|BK000383.1| TPA: TPA_exp: Homo sapiens neuregulin 1 isoform (NRG1) gene, alternatively spliced, complete cds Length = 1421559 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 89 ccaaaccatgaaaaattcaaa 109 ||||||||||||||||||||| Sbjct: 1356582 ccaaaccatgaaaaattcaaa 1356602
>gb|BC095066.1| Danio rerio hypothetical protein LOC553425, mRNA (cDNA clone IMAGE:7256190), partial cds Length = 932 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 accttcttgccttgatcctct 245 ||||||||||||||||||||| Sbjct: 849 accttcttgccttgatcctct 829
>gb|BC076180.1| Danio rerio hypothetical protein LOC553425, mRNA (cDNA clone IMAGE:7074959), partial cds Length = 929 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 accttcttgccttgatcctct 245 ||||||||||||||||||||| Sbjct: 849 accttcttgccttgatcctct 829
>gb|AC154545.2| Mus musculus BAC clone RP23-431G16 from chromosome 16, complete sequence Length = 202933 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 380 cagcaccatccccttgttcctctcc 404 |||||||||||| |||||||||||| Sbjct: 158233 cagcaccatcccattgttcctctcc 158209
>gb|AC092159.4| Homo sapiens BAC clone RP11-455F15 from 2, complete sequence Length = 82115 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 103 attcaaaagccattattcacagttg 127 |||||||||||| |||||||||||| Sbjct: 78352 attcaaaagccagtattcacagttg 78328
>emb|BX469895.7| Zebrafish DNA sequence from clone DKEY-152C18 in linkage group 19, complete sequence Length = 179493 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 99 aaaaattcaaaagccattattcaca 123 ||||||||||||||| ||||||||| Sbjct: 9566 aaaaattcaaaagcctttattcaca 9590
>gb|AC154391.1| Medicago truncatula chromosome 7 BAC clone mth2-143d17, complete sequence Length = 123865 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 aaaaatagaataaaatcaca 148 |||||||||||||||||||| Sbjct: 36333 aaaaatagaataaaatcaca 36352
>ref|XM_640452.1| Dictyostelium discoideum hypothetical protein (DDB0168367), partial mRNA Length = 3201 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 acacttgaaccaccaccata 74 |||||||||||||||||||| Sbjct: 2822 acacttgaaccaccaccata 2803
>ref|NM_192374.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1212 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 acttgttcaccagcgccacg 473 |||||||||||||||||||| Sbjct: 1066 acttgttcaccagcgccacg 1047
>ref|XM_323518.1| Neurospora crassa OR74A hypothetical protein ( (AL451015) related to finger protein AZF1 [Neurospora crassa OR74A] ) (NCU04179.1) partial mRNA Length = 1569 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 gttggccccagcaccatccc 391 |||||||||||||||||||| Sbjct: 110 gttggccccagcaccatccc 129
>ref|XM_956046.1| Neurospora crassa OR74A hypothetical protein ( (AL451015) related to finger protein AZF1 [Neurospora crassa OR74A] ) (NCU04179.1) partial mRNA Length = 1569 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 gttggccccagcaccatccc 391 |||||||||||||||||||| Sbjct: 110 gttggccccagcaccatccc 129
>ref|XM_960144.1| Neurospora crassa OR74A hypothetical protein (NCU08334.1) partial mRNA Length = 3168 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 atcttcccgttgacgaccgg 322 |||||||||||||||||||| Sbjct: 1337 atcttcccgttgacgaccgg 1356
>ref|XM_329379.1| Neurospora crassa OR74A hypothetical protein (NCU08334.1) partial mRNA Length = 3168 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 atcttcccgttgacgaccgg 322 |||||||||||||||||||| Sbjct: 1337 atcttcccgttgacgaccgg 1356
>gb|AE002130.1| Ureaplasma parvum serovar 3 str. ATCC 700970 section 31 of 59 of the complete genome Length = 12070 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 76 ataaacgtttgtaccaaaccatga 99 ||||| |||||||||||||||||| Sbjct: 1931 ataaaagtttgtaccaaaccatga 1908
>emb|Z68338.1|CET24B8 Caenorhabditis elegans Cosmid T24B8, complete sequence Length = 38779 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 276 gtggtggcagcgacatcgtcgtcg 299 |||||||| ||||||||||||||| Sbjct: 9953 gtggtggctgcgacatcgtcgtcg 9930
>gb|AC124384.4| Mus musculus BAC clone RP24-413G2 from chromosome 12, complete sequence Length = 183707 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 224 gaccttcttgccttgatcctctgc 247 ||||||||||| |||||||||||| Sbjct: 103372 gaccttcttgctttgatcctctgc 103349
>ref|XM_546696.2| PREDICTED: Canis familiaris similar to thioesterase, adipose associated isoform BFIT2 (LOC489576), mRNA Length = 1881 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 caccagcgccacgctccggt 480 |||||||||||||||||||| Sbjct: 1482 caccagcgccacgctccggt 1463
>gb|AC005090.2| Homo sapiens BAC clone CTA-315L10 from 7, complete sequence Length = 116218 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 tcctctgaccttcttgcctt 237 |||||||||||||||||||| Sbjct: 3966 tcctctgaccttcttgcctt 3985
>gb|AC146242.3| Pan troglodytes BAC clone CH251-163E9 from Y, complete sequence Length = 142863 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 117 attcacagttgcaaaaatagaataaaat 144 ||||||| |||| ||||||||||||||| Sbjct: 13502 attcacaattgctaaaatagaataaaat 13475
>gb|AC134822.19| Medicago truncatula clone mth2-15j20, complete sequence Length = 106152 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 gcaaaaatagaataaaatca 146 |||||||||||||||||||| Sbjct: 41512 gcaaaaatagaataaaatca 41531
>emb|AL672277.20| Human DNA sequence from clone RP11-309M23 on chromosome X contains a novel gene and a ribosomal protein L14 (RPL14) pseudogene, complete sequence Length = 131682 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 aaaaatagaataaaatcaca 148 |||||||||||||||||||| Sbjct: 46326 aaaaatagaataaaatcaca 46345
>emb|AL356313.15| Human DNA sequence from clone RP11-531P20 on chromosome 13 Contains a novel gene, complete sequence Length = 143957 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 ccattattcacagttgcaaaaata 135 |||||||||||||| ||||||||| Sbjct: 4573 ccattattcacagtagcaaaaata 4550
>gb|AC099526.5| Papio anubis clone RP41-308A9, complete sequence Length = 143983 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 tcctctgaccttcttgcctt 237 |||||||||||||||||||| Sbjct: 326 tcctctgaccttcttgcctt 345
>emb|AL139085.13| Human DNA sequence from clone RP11-431O22 on chromosome 13 Contains the 5' end of the gene for chondromodulin I precursor (CHM-I), a novel gene, the PCDH8 gene for protocadherin 8 and 4 CpG islands, complete sequence Length = 173292 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 117 attcacagttgcaaaaatagaataaaat 144 |||||||||||| |||| |||||||||| Sbjct: 5634 attcacagttgctaaaagagaataaaat 5607
>gb|AC069439.18| Homo sapiens 3 BAC RP11-12K11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 104485 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 117 attcacagttgcaaaaatagaataaaat 144 |||||||||||| |||| |||||||||| Sbjct: 81568 attcacagttgccaaaaaagaataaaat 81541
>emb|AL008723.8|HS90G24 Human DNA sequence from clone RP1-90G24 on chromosome 22 Contains the 5' end of a novel gene, the RFPL2 gene for ret finger protein-like 2, a Immunoglobulin Lambda Light Chain C region (IGLC) pseudogene (IGLCOR22-1), the SLC5A4 gene for solute carrier family 5 (low affinity glucose cotransporter), member 4 and a pseudogene similar to part of cleavage and polyadenylation specific factor 1, 160kDa (CPSF1), complete sequence Length = 154414 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 gtggtggtggcagcgacatc 292 |||||||||||||||||||| Sbjct: 115993 gtggtggtggcagcgacatc 115974
>emb|AL451015.1|NCB13O20 Neurospora crassa DNA linkage group V BAC clone B13O20 Length = 65076 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 gttggccccagcaccatccc 391 |||||||||||||||||||| Sbjct: 16227 gttggccccagcaccatccc 16246
>gb|AC032044.28| Homo sapiens chromosome 17, clone RP11-818O24, complete sequence Length = 199656 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gctaggagtggtggtggcag 285 |||||||||||||||||||| Sbjct: 98118 gctaggagtggtggtggcag 98099
>emb|CR932960.3| Medicago truncatula chromosome 5 clone mth4-7a5, COMPLETE SEQUENCE Length = 199033 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 acagttgcaaaaatagaataaaat 144 ||||||||||||||| |||||||| Sbjct: 122839 acagttgcaaaaataaaataaaat 122862
>emb|AL669858.8| Mouse DNA sequence from clone RP23-51G7 on chromosome 11 Contains a ribosomal protein L15 (Rpl15) pseudogene, the Otx1 gene for orthodenticle homolog 1, the 3' end of a novel gene and two CpG islands, complete sequence Length = 240514 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gttgcaaaaatagaataaaa 143 |||||||||||||||||||| Sbjct: 81898 gttgcaaaaatagaataaaa 81917
>gb|AC073593.13| Homo sapiens 12 BAC RP11-13J12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 153299 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 377 ccccagcaccatccccttgttcct 400 |||||||||| ||||||||||||| Sbjct: 88648 ccccagcaccctccccttgttcct 88671
>dbj|BS000633.3| Pan troglodytes chromosome Y clone: PTB-483C22, complete sequence Length = 129300 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 117 attcacagttgcaaaaatagaataaaat 144 ||||||| |||| ||||||||||||||| Sbjct: 65103 attcacaattgctaaaatagaataaaat 65130
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 117 attcacagttgcaaaaatagaataaaat 144 ||||||| |||| ||||||||||||||| Sbjct: 20255065 attcacaattgctaaaatagaataaaat 20255038
>gb|AC145339.34| Pan troglodytes clone rp43-58e4, complete sequence Length = 150845 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 gtggtggtggcagcgacatc 292 |||||||||||||||||||| Sbjct: 111259 gtggtggtggcagcgacatc 111278
>gb|AC145336.18| Pan troglodytes clone rp43-33e5, complete sequence Length = 155317 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 gtggtggtggcagcgacatc 292 |||||||||||||||||||| Sbjct: 63592 gtggtggtggcagcgacatc 63611
>gb|AC035139.11| Homo sapiens chromosome 10 clone RP11-563N6, complete sequence Length = 210472 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 attcacagttgcaaaaatag 136 |||||||||||||||||||| Sbjct: 164526 attcacagttgcaaaaatag 164545
>gb|AC060234.11| Homo sapiens chromosome 10 clone RP11-523O18, complete sequence Length = 170073 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 attcacagttgcaaaaatag 136 |||||||||||||||||||| Sbjct: 26151 attcacagttgcaaaaatag 26170
>gb|AC096755.2| Homo sapiens BAC clone RP11-519M16 from 4, complete sequence Length = 182440 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 tgaaaaattcaaaagccatt 116 |||||||||||||||||||| Sbjct: 72697 tgaaaaattcaaaagccatt 72678
>gb|AF464763.1| Candida dubliniensis hypothetical protein gene, complete cds; and hypothetical protein YOL57 gene, partial cds Length = 6737 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 aaagcatgcagggagaaact 213 |||||||||||||||||||| Sbjct: 3483 aaagcatgcagggagaaact 3502
>ref|NG_005204.1| Homo sapiens cleavage and polyadenylation specific factor 1, 160kDa pseudogene 1 (CPSF1P1) on chromosome 22 Length = 4001 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 gtggtggtggcagcgacatc 292 |||||||||||||||||||| Sbjct: 3857 gtggtggtggcagcgacatc 3838
>gb|AC027322.4| Homo sapiens chromosome 5 clone CTD-2027G10, complete sequence Length = 156248 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 attcacagttgcaaaaatag 136 |||||||||||||||||||| Sbjct: 59594 attcacagttgcaaaaatag 59575
>gb|AC020898.6| Homo sapiens chromosome 5 clone CTC-451P13, complete sequence Length = 164498 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ttgcaaaaatagaataaaat 144 |||||||||||||||||||| Sbjct: 69290 ttgcaaaaatagaataaaat 69309
>gb|AC159032.2| Pan troglodytes BAC clone CH251-358H13 from chromosome unknown, complete sequence Length = 183880 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 gtggtggtggcagcgacatc 292 |||||||||||||||||||| Sbjct: 175400 gtggtggtggcagcgacatc 175381
>gb|AC025435.6| Homo sapiens chromosome 5 clone CTC-424K13, complete sequence Length = 98939 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ttgcaaaaatagaataaaat 144 |||||||||||||||||||| Sbjct: 55711 ttgcaaaaatagaataaaat 55730
>gb|AC147710.3| Pan troglodytes BAC clone CH251-473C15 from chromosome y, complete sequence Length = 200403 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 117 attcacagttgcaaaaatagaataaaat 144 ||||||| |||| ||||||||||||||| Sbjct: 53235 attcacaattgctaaaatagaataaaat 53262
>gb|AC116982.2| Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence Length = 256879 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 acacttgaaccaccaccata 74 |||||||||||||||||||| Sbjct: 12474 acacttgaaccaccaccata 12493
>gb|BC036751.1| Homo sapiens, clone IMAGE:4157666, mRNA Length = 1756 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 gtggtggtggcagcgacatc 292 |||||||||||||||||||| Sbjct: 1265 gtggtggtggcagcgacatc 1246
>gb|AC098811.3| Papio anubis clone RP41-367L14, complete sequence Length = 182644 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 tcctctgaccttcttgcctt 237 |||||||||||||||||||| Sbjct: 145094 tcctctgaccttcttgcctt 145113
>gb|AC124248.6| Homo sapiens chromosome 15, clone CTD-3094K11, complete sequence Length = 142201 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 ttcctctgaccttcttgcct 236 |||||||||||||||||||| Sbjct: 95192 ttcctctgaccttcttgcct 95211
>dbj|AP003062.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-555G19, complete sequence Length = 171428 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 117 attcacagttgcaaaaatagaataaaat 144 ||||||| |||| ||||||||||||||| Sbjct: 128119 attcacaattgctaaaatagaataaaat 128092
>dbj|AP000926.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-762B21, complete sequence Length = 196972 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 aaaaatagaataaaatcaca 148 |||||||||||||||||||| Sbjct: 84061 aaaaatagaataaaatcaca 84042
>gb|AC005800.1|AC005800 Homo sapiens Chromosome 15q26.1 PAC clone pDJ427d15, complete sequence Length = 100259 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 ttcctctgaccttcttgcct 236 |||||||||||||||||||| Sbjct: 1781 ttcctctgaccttcttgcct 1762
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 aaaaattcaaaagccattattcac 122 ||||||||||||||||| |||||| Sbjct: 376779 aaaaattcaaaagccatgattcac 376802 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,742,933 Number of Sequences: 3902068 Number of extensions: 4742933 Number of successful extensions: 103646 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103356 Number of HSP's gapped (non-prelim): 288 length of query: 482 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 460 effective length of database: 17,147,199,772 effective search space: 7887711895120 effective search space used: 7887711895120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)