ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet70d04 |
|---|---|
| Clone Library Name | barley_pub |
>PPT1_RAT (P45479) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 53.5 bits (127), Expect = 2e-07 Identities = 24/51 (47%), Positives = 35/51 (68%) Frame = -2 Query: 432 LPPQQTKLYQEDWIGLKALDEAGRVKFVSVPGGHLGISNSDMRKHIVPYLK 280 +P Q+T LY ED +GLK +D+AG++ F++ G HL IS HI+P+LK Sbjct: 256 IPLQETTLYTEDRLGLKKMDKAGKLVFLAKEGDHLQISKEWFTAHIIPFLK 306
>PPT1_MOUSE (O88531) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 52.0 bits (123), Expect = 7e-07 Identities = 23/51 (45%), Positives = 35/51 (68%) Frame = -2 Query: 432 LPPQQTKLYQEDWIGLKALDEAGRVKFVSVPGGHLGISNSDMRKHIVPYLK 280 +P Q++ LY ED +GLK +D+AG++ F++ G HL IS HI+P+LK Sbjct: 256 IPLQESTLYTEDRLGLKKMDKAGKLVFLAKEGDHLQISKEWFTAHIIPFLK 306
>PPT1_BOVIN (P45478) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 50.8 bits (120), Expect = 2e-06 Identities = 21/51 (41%), Positives = 37/51 (72%) Frame = -2 Query: 432 LPPQQTKLYQEDWIGLKALDEAGRVKFVSVPGGHLGISNSDMRKHIVPYLK 280 +P Q++ LY +D +GLKA+D+AG++ F+++ G HL +S HI+P+L+ Sbjct: 256 IPLQESTLYTQDRLGLKAMDKAGQLVFLALEGDHLQLSEEWFYAHIIPFLE 306
>PPT1_MACFA (Q8HXW6) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 49.7 bits (117), Expect = 4e-06 Identities = 21/50 (42%), Positives = 33/50 (66%) Frame = -2 Query: 432 LPPQQTKLYQEDWIGLKALDEAGRVKFVSVPGGHLGISNSDMRKHIVPYL 283 +P Q+T LY +D +GLK +D AG++ F++ G HL +S HI+P+L Sbjct: 256 IPLQETSLYTQDRLGLKEMDNAGQLVFLATEGDHLQLSEEWFYAHIIPFL 305
>PPT1_HUMAN (P50897) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 49.7 bits (117), Expect = 4e-06 Identities = 21/50 (42%), Positives = 33/50 (66%) Frame = -2 Query: 432 LPPQQTKLYQEDWIGLKALDEAGRVKFVSVPGGHLGISNSDMRKHIVPYL 283 +P Q+T LY +D +GLK +D AG++ F++ G HL +S HI+P+L Sbjct: 256 IPLQETSLYTQDRLGLKEMDNAGQLVFLATEGDHLQLSEEWFYAHIIPFL 305
>CK5P3_MOUSE (Q99LM2) CDK5 regulatory subunit-associated protein 3| Length = 503 Score = 33.1 bits (74), Expect = 0.35 Identities = 28/102 (27%), Positives = 49/102 (48%) Frame = -2 Query: 327 GISNSDMRKHIVPYLKDKPSASASLAATWHAIGEALGLMGNDVGVLLQSST**STIMLSG 148 GI+ ++R+ ++ +KD PS A + A ++GEA+ L V + S T ML Sbjct: 169 GITGDNVRRELLALVKDLPSQLAEIGAGAQSLGEAIDLYQACVEFVCDSPTEQVLPMLRY 228 Query: 147 IYNVGWCTCHSLFRLLVVASLCRRPHQL*KQKSKVKCQVLNW 22 + G T + +R S+ RP QL + +V+ ++W Sbjct: 229 VQKKGNSTVYE-WRTGTEPSVVERP-QLEEPPEQVQEDEIDW 268
>CK5P3_RAT (Q9JLH7) CDK5 regulatory subunit-associated protein 3 (CDK5| activator-binding protein C53) Length = 504 Score = 31.6 bits (70), Expect = 1.0 Identities = 28/102 (27%), Positives = 48/102 (47%) Frame = -2 Query: 327 GISNSDMRKHIVPYLKDKPSASASLAATWHAIGEALGLMGNDVGVLLQSST**STIMLSG 148 GI+ ++R+ ++ +KD PS A + A ++GEA+ L V + S T ML Sbjct: 169 GITGDNVRRELLALVKDLPSQLAEIGAGAQSLGEAIDLYQACVEFVCDSPTEQVLPMLRY 228 Query: 147 IYNVGWCTCHSLFRLLVVASLCRRPHQL*KQKSKVKCQVLNW 22 + G T + +R S+ RP QL +V+ ++W Sbjct: 229 VQPKGNSTVYE-WRTGTEPSVVERP-QLEDPPEQVQEDEIDW 268 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = -2 Query: 429 PPQQTKLYQEDW--IGLKALDEAGRVKFVSVPGGHLGIS 319 PP+Q + + DW GL+A+ ++G + PG GIS Sbjct: 257 PPEQVQEDEIDWGDFGLEAVSDSGNIISAETPGIDWGIS 295
>NED4L_HUMAN (Q96PU5) E3 ubiquitin-protein ligase NEDD4-like protein (EC| 6.3.2.-) (Nedd4-2) (NEDD4.2) Length = 975 Score = 29.6 bits (65), Expect = 3.8 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = -2 Query: 306 RKHIVPYLKDKPSASASLAATWHAIGEALGLMGNDVGVLL 187 R+HI L+ +PS + W I E + + G+ +G+ L Sbjct: 252 RRHISEDLEPEPSEGGDVPEPWETISEEVNIAGDSLGLAL 291
>DGKQ_HUMAN (P52824) Diacylglycerol kinase theta (EC 2.7.1.107) (Diglyceride| kinase theta) (DGK-theta) (DAG kinase theta) Length = 942 Score = 29.6 bits (65), Expect = 3.8 Identities = 13/20 (65%), Positives = 13/20 (65%) Frame = -1 Query: 382 GPGRGRASQVRVGARRPPGH 323 GPGR RA VR AR PGH Sbjct: 42 GPGRDRAGGVRARARAAPGH 61
>NED4L_PONPY (Q5RBF2) E3 ubiquitin-protein ligase NEDD4-like protein (EC| 6.3.2.-) Length = 959 Score = 29.6 bits (65), Expect = 3.8 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = -2 Query: 306 RKHIVPYLKDKPSASASLAATWHAIGEALGLMGNDVGVLL 187 R+HI L+ +PS + W I E + + G+ +G+ L Sbjct: 256 RRHISEDLEPEPSEGGDVPEPWETISEEVNIAGDSLGLAL 295
>NEUR_DROVI (Q24746) Protein neuralized| Length = 747 Score = 29.6 bits (65), Expect = 3.8 Identities = 20/78 (25%), Positives = 38/78 (48%) Frame = -2 Query: 432 LPPQQTKLYQEDWIGLKALDEAGRVKFVSVPGGHLGISNSDMRKHIVPYLKDKPSASASL 253 LP QQ +L Q+ L ++ R S+PGG + + ++ +H++P L+ Sbjct: 280 LPQQQQQLPQQQLTAHHPLQQSRR----SLPGGTGVVVDHELERHVMPSLQ--------- 326 Query: 252 AATWHAIGEALGLMGNDV 199 + H G A G++ +D+ Sbjct: 327 --SLHLAGTAAGIIEHDL 342
>UBX3_SCHPO (Q9UT81) UBX domain-containing protein 3| Length = 410 Score = 29.6 bits (65), Expect = 3.8 Identities = 11/30 (36%), Positives = 21/30 (70%) Frame = -2 Query: 306 RKHIVPYLKDKPSASASLAATWHAIGEALG 217 R+H + L ++ S +SLA++W ++G+ LG Sbjct: 151 RQHTISPLDEQDSGPSSLASSWASVGQRLG 180
>MTA1_HUMAN (Q13330) Metastasis-associated protein MTA1| Length = 715 Score = 28.9 bits (63), Expect = 6.6 Identities = 19/46 (41%), Positives = 23/46 (50%) Frame = +3 Query: 297 CVSSCRCWRCPGGLLAPTRT*LARPRPGPSDRSSLPDTALSAEEVG 434 C S W+ GGL PTR L RPGP +RS++ L A G Sbjct: 417 CASCWTYWKKYGGLKMPTR--LDGERPGP-NRSNMSPHGLPARSSG 459
>NAH3_METJA (Q58671) Probable Na(+)/H(+) antiporter 3 (MjNapA)| Length = 388 Score = 28.9 bits (63), Expect = 6.6 Identities = 19/48 (39%), Positives = 26/48 (54%) Frame = -2 Query: 330 LGISNSDMRKHIVPYLKDKPSASASLAATWHAIGEALGLMGNDVGVLL 187 L I D K+ + L P SASL A +IG LGL+GN++ V + Sbjct: 314 LRILGFDRIKNTIGGLLTVPKISASLVAA--SIGRELGLIGNEIFVTI 359
>RFFA_ECOLI (P27833) Lipopolysaccharide biosynthesis protein rffA| Length = 376 Score = 28.5 bits (62), Expect = 8.6 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 8/72 (11%) Frame = -2 Query: 423 QQTKLYQEDWIGLKALDEAGRVKFVSVPGG--------HLGISNSDMRKHIVPYLKDKPS 268 Q+ L+Q + L L +AGR++ S+P G ++ + + D R ++ +LK+ Sbjct: 256 QRLALWQNYYDALAPLAKAGRIELPSIPDGCVQNAHMFYIKLRDIDDRSALINFLKE--- 312 Query: 267 ASASLAATWHAI 232 A + A +H I Sbjct: 313 --AEIMAVFHYI 322 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,080,303 Number of Sequences: 219361 Number of extensions: 1366908 Number of successful extensions: 3992 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3850 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3991 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
