ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet70c07 |
|---|---|
| Clone Library Name | barley_pub |
>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2| Length = 969 Score = 41.2 bits (95), Expect = 0.001 Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Frame = -1 Query: 446 RPGASRWGTPTARRTPWGARHGSRCTTATTSVGAGRWPCGVAEQTSSTARCRRSP-VKPG 270 +PG + P A+ TP G R G R T A P AEQT+ R P VKPG Sbjct: 62 KPGPAASARPGAKPTPGGPRPGPR-----TPAPAASAPQAPAEQTARPTDARPGPAVKPG 116 Query: 269 MAVWTWRCASPRTPWAASSP 210 A R A+P P A ++P Sbjct: 117 PAPTPARPAAPEAPAAKAAP 136
>HCBT3_DIACA (O23918) Anthranilate N-benzoyltransferase protein 3 (EC 2.3.1.144)| (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 3) Length = 445 Score = 32.0 bits (71), Expect = 0.82 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%) Frame = -3 Query: 429 LGNPDGAAHT---MGSSPRFPMYDGNDFGWGRAVAVRSGRANKF-DGKMSAFPGQAGDGS 262 +G+P+ + + S R P Y DFGWG G +N F DG+ P Q GDGS Sbjct: 367 MGSPEKTLYPNVLVNSWGRIP-YQAMDFGWGNPTFF--GISNIFYDGQCFLIPSQNGDGS 423 Query: 261 VDVEVCL 241 + + + L Sbjct: 424 MTLAINL 430
>HCBT2_DIACA (O23917) Anthranilate N-benzoyltransferase protein 2 (EC 2.3.1.144)| (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 2) Length = 446 Score = 31.6 bits (70), Expect = 1.1 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%) Frame = -3 Query: 429 LGNPDGAAHT---MGSSPRFPMYDGNDFGWGRAVAVRSGRANKF-DGKMSAFPGQAGDGS 262 +G+P+ + + S R P Y DFGWG G +N F DG+ P Q GDGS Sbjct: 368 MGSPEKTLYPNVLVNSWGRIP-YQAMDFGWGSPTFF--GISNIFYDGQCFLIPSQNGDGS 424 Query: 261 VDVEVCL 241 + + + L Sbjct: 425 MTLAINL 431
>HCBT1_DIACA (O24645) Anthranilate N-benzoyltransferase protein 1 (EC 2.3.1.144)| (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 1) Length = 445 Score = 30.8 bits (68), Expect = 1.8 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Frame = -3 Query: 429 LGNPDGAAHT---MGSSPRFPMYDGNDFGWGRAVAVRSGRANKF-DGKMSAFPGQAGDGS 262 +G+P+ + + S R P Y DFGWG G +N F DG+ P + GDGS Sbjct: 367 MGSPEKTLYPNVLVNSWGRIP-YQAMDFGWGSPTFF--GISNIFYDGQCFLIPSRDGDGS 423 Query: 261 VDVEVCLAPDTMGR 220 + + + L + R Sbjct: 424 MTLAINLFSSHLSR 437
>Y801_DEIRA (Q9RW68) Putative carotenoid cyclase DR0801| Length = 410 Score = 30.8 bits (68), Expect = 1.8 Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 2/73 (2%) Frame = -1 Query: 470 QAAADWRRRPGASRWGTPTARRTPWGARHGSRCTTATTSVGAGRWPCGVAEQTSS--TAR 297 + AA R GA W A W R + V R+P G A QT+ AR Sbjct: 108 EGAALHAERSGAG-WTVYGAGGERWQTRLVVDASGHGALVSPVRFPGGAALQTAYGVVAR 166 Query: 296 CRRSPVKPGMAVW 258 RR PV PG VW Sbjct: 167 FRRPPVTPGSMVW 179
>NIR_NEUCR (P38681) Nitrite reductase [NAD(P)H] (EC 1.7.1.4)| Length = 1176 Score = 30.4 bits (67), Expect = 2.4 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%) Frame = -1 Query: 308 STARCRRSPVKPGMAVWTWRCASPRT-----PWAASSPTTNSCSSCHMHLDGVHRIWLSC 144 S + C S + P R +SP T P ++++P T + SSC + G W+SC Sbjct: 999 SPSSCSSSALPPSPPSTPPRSSSPVTSPPQSPTSSATPATTASSSCTTNPSGPASPWISC 1058
>GUNB_PSEFL (P18126) Endoglucanase B precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Cellulase) (EGB) Length = 511 Score = 30.0 bits (66), Expect = 3.1 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 10/94 (10%) Frame = -1 Query: 416 TARRTPWGARHGSRCTTATTSVGAGRWPCGVAEQTSSTARCRRSPVKP------GMAVWT 255 T+ TP + SR + A++S ++ TSS+A S V P G A Sbjct: 224 TSSSTPLSSSSSSRSSVASSS--------SLSSATSSSASSVSS-VPPIDGGCNGYATRY 274 Query: 254 WRCASPRTPWAASSPT----TNSCSSCHMHLDGV 165 W C P W+A+ P+ SCS+ + L V Sbjct: 275 WDCCKPHCGWSANVPSLVSPLQSCSANNTRLSDV 308
>DDHB_RHOSU (Q8GPG3) Dimethylsulfide dehydrogenase beta subunit| (Dimethylsulfide iron-sulfur subunit) (DMS DH beta subunit) (DMS DH iron-sulfur subunit) Length = 325 Score = 30.0 bits (66), Expect = 3.1 Identities = 8/18 (44%), Positives = 15/18 (83%) Frame = +3 Query: 264 CHPRLDRGTPTSCRRTCL 317 C+PR+++G PT+C + C+ Sbjct: 195 CYPRIEKGLPTACAKQCV 212
>SCNB_THITI (O66186) Thiocyanate hydrolase beta subunit (EC 3.5.5.8)| Length = 156 Score = 30.0 bits (66), Expect = 3.1 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Frame = +1 Query: 292 RHLAVELVCSATPHG--HRPAPTEVVAVVHREPWRAPHGVRRAVGVP 426 RHL + H H PAPTE+ + R R PH V VP Sbjct: 10 RHLGTVALMQPALHQQTHAPAPTEITHTLFRAYTRVPHDVGGEADVP 56
>CB027_HUMAN (Q580R0) Protein C2orf27| Length = 203 Score = 29.6 bits (65), Expect = 4.1 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 12/77 (15%) Frame = -1 Query: 455 WRRRPGASRW-------GTPTARRTPWGARHGSRCTTA----TTSVGAGRWPCGVAEQTS 309 WR+RPG + W GT +++ A G T A + GAG + S Sbjct: 116 WRQRPGFAIWAPLPHWRGTSLIQQSSSPAAEGPAATAAGAVCLPAGGAGEQEKEPVSRGS 175 Query: 308 STARC-RRSPVKPGMAV 261 S + C +R P PGM V Sbjct: 176 SRSSCSQRRPPPPGMEV 192
>UBP4_HUMAN (Q13107) Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15)| (Ubiquitin thioesterase 4) (Ubiquitin-specific-processing protease 4) (Deubiquitinating enzyme 4) (Ubiquitous nuclear protein homolog) Length = 963 Score = 29.6 bits (65), Expect = 4.1 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Frame = -1 Query: 344 GRWPCGVAEQTSSTARCRRSPVKPGMAVWTWRCASPRTPWAAS-SPTTNSCSSCHMHLDG 168 G WP + SSTA R P + ASP + +AS +S S+C MH G Sbjct: 222 GTWPRQTLQSKSSTAPSRNFTTSPKSS------ASPYSSVSASLIANGDSTSTCGMHSSG 275 Query: 167 VHR 159 V R Sbjct: 276 VSR 278
>RCSC_ECOLI (P14376) Sensor kinase protein rcsC (EC 2.7.13.3) (Capsular| synthesis regulator component C) Length = 949 Score = 29.6 bits (65), Expect = 4.1 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 20/87 (22%) Frame = +1 Query: 268 IPGLTGERRHLAVEL---------------VCSATPHGHRPAPTEVVAV--VHREPWRAP 396 + GL+G+R LAV + T G P P +V+ V + W+ Sbjct: 701 VEGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQEPTPEDVLITDEVVSKKWQGR 760 Query: 397 HGV---RRAVGVPQREAPGRRLQSAAA 468 V RR +G+P +APG + S AA Sbjct: 761 AVVTFCRRHIGIPLEKAPGEWVHSVAA 787
>BAI2_HUMAN (O60241) Brain-specific angiogenesis inhibitor 2 precursor| Length = 1572 Score = 29.6 bits (65), Expect = 4.1 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Frame = -3 Query: 468 GRGGLEAAPRCFPLGNPDGAAHTMGSSPRFPMY---DGNDFGWGRA 340 G GG E APR P G P AA T+ + +P + D + G G A Sbjct: 1354 GGGGGEDAPRARPEGTPRRAAKTVAHTEGYPSFLSVDHSGLGLGPA 1399
>NARY_ECOLI (P19318) Respiratory nitrate reductase 2 beta chain (EC 1.7.99.4)| Length = 514 Score = 29.3 bits (64), Expect = 5.3 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +3 Query: 264 CHPRLDRGTPTSCRRTCL 317 C+PR++ G PT C TC+ Sbjct: 246 CYPRIESGQPTVCSETCV 263
>NARH_SHIFL (Q83RN5) Respiratory nitrate reductase 1 beta chain (EC 1.7.99.4)| Length = 512 Score = 29.3 bits (64), Expect = 5.3 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +3 Query: 264 CHPRLDRGTPTSCRRTCL 317 C+PR++ G PT C TC+ Sbjct: 247 CYPRIEAGQPTVCSETCV 264
>NARH_ECOLI (P11349) Respiratory nitrate reductase 1 beta chain (EC 1.7.99.4)| (Nitrate reductase A beta subunit) (Quinol-nitrate oxidoreductase beta subunit) Length = 512 Score = 29.3 bits (64), Expect = 5.3 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +3 Query: 264 CHPRLDRGTPTSCRRTCL 317 C+PR++ G PT C TC+ Sbjct: 247 CYPRIEAGQPTVCSETCV 264
>VGLL1_HUMAN (Q99990) Transcription cofactor vestigial-like protein 1 (Vgl-1)| (TONDU protein) Length = 258 Score = 29.3 bits (64), Expect = 5.3 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -1 Query: 254 WRCASPRTPWAASSPTTNSCSSCHMHLDG 168 WR +SP T P TN ++C++H+ G Sbjct: 80 WRYSSPWTKPQPEVPVTNRAANCNLHVPG 108
>TNKS1_HUMAN (O95271) Tankyrase 1 (EC 2.4.2.30) (TANK1) (Tankyrase I) (TNKS-1)| (TRF1-interacting ankyrin-related ADP-ribose polymerase) Length = 1327 Score = 29.3 bits (64), Expect = 5.3 Identities = 24/77 (31%), Positives = 33/77 (42%) Frame = -1 Query: 419 PTARRTPWGARHGSRCTTATTSVGAGRWPCGVAEQTSSTARCRRSPVKPGMAVWTWRCAS 240 P R+P S C+T +T P A TSS A +P G S Sbjct: 75 PDRPRSPDPVDGTSCCSTTSTICTVAAAPVVPAVSTSSAAGVAPNPAGSG---------S 125 Query: 239 PRTPWAASSPTTNSCSS 189 +P ++SSPT++S SS Sbjct: 126 NNSPSSSSSPTSSSSSS 142
>DAN4_YEAST (P47179) Cell wall protein DAN4 precursor| Length = 1161 Score = 29.3 bits (64), Expect = 5.3 Identities = 20/80 (25%), Positives = 36/80 (45%) Frame = -1 Query: 422 TPTARRTPWGARHGSRCTTATTSVGAGRWPCGVAEQTSSTARCRRSPVKPGMAVWTWRCA 243 TPT TP + + TT+TTS + A TS+T+ + +V + Sbjct: 257 TPTTSTTPTTSTTSTAPTTSTTSTTSTTSTISTAPTTSTTSSTFSTSSASASSVISTTAT 316 Query: 242 SPRTPWAASSPTTNSCSSCH 183 + T + ++P T++ S+ H Sbjct: 317 TSTTFASLTTPATSTASTDH 336
>ROBO4_RAT (Q80W87) Roundabout homolog 4 precursor| Length = 961 Score = 28.9 bits (63), Expect = 6.9 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 17/94 (18%) Frame = -1 Query: 422 TPTARR---------TPWGARHG-----SRCTTATTSVGAGRWPCGVAEQTSSTARCRRS 285 TP ARR +PW + C+ + A W A++ + S Sbjct: 612 TPAARRLPPKLTGTSSPWASSDSLCSRRGLCSPRMSLAPAEAWK---AKKKQELHQANSS 668 Query: 284 PVKPG---MAVWTWRCASPRTPWAASSPTTNSCS 192 P+ G M +W W S + + SP N+CS Sbjct: 669 PLLQGSHPMEIWAWELGSRASKNLSQSPGPNTCS 702
>HIPL1_ARATH (Q9SSG3) HIPL1 protein precursor| Length = 695 Score = 28.9 bits (63), Expect = 6.9 Identities = 12/25 (48%), Positives = 19/25 (76%) Frame = -1 Query: 236 RTPWAASSPTTNSCSSCHMHLDGVH 162 R P +SSP+++S SSC+ H++G H Sbjct: 653 RNPGTSSSPSSSS-SSCYKHINGFH 676
>NARH_BACSU (P42176) Nitrate reductase beta chain (EC 1.7.99.4)| Length = 487 Score = 28.9 bits (63), Expect = 6.9 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = +3 Query: 264 CHPRLDRGTPTSCRRTCL 317 C PRL+ G PT C TC+ Sbjct: 244 CFPRLEAGLPTICSETCV 261
>AUXI_BOVIN (Q27974) Auxilin| Length = 910 Score = 28.9 bits (63), Expect = 6.9 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -1 Query: 464 AADWRRRPGASRWGTPTARRTPWGARHGS 378 A DW +PG G+ +A +P G+ HG+ Sbjct: 635 AWDWHTKPGGFGMGSKSAATSPTGSSHGT 663
>YBL2_STRCI (P33654) Hypothetical 14.2 kDa protein in blaB 3'region| Length = 132 Score = 28.5 bits (62), Expect = 9.1 Identities = 26/87 (29%), Positives = 37/87 (42%) Frame = -1 Query: 452 RRRPGASRWGTPTARRTPWGARHGSRCTTATTSVGAGRWPCGVAEQTSSTARCRRSPVKP 273 RRR AS +A +P G RCT+ TSV A TSS A Sbjct: 13 RRRQCASTSAAVSATSSPKTC--GCRCTSFVTSVPA----------TSSIAN-------- 52 Query: 272 GMAVWTWRCASPRTPWAASSPTTNSCS 192 G + +W + +T W+ +SP ++ S Sbjct: 53 GSSASSWAIRAWKTTWSRTSPNSSRSS 79
>Y1289_MYCBO (P64786) Hypothetical protein Mb1289| Length = 268 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = -1 Query: 305 TARCRRSPVKPGMAVWTWRCASPRTPWAASS 213 T R RSPV+PG W A+P+TP AA + Sbjct: 5 TGRAFRSPVEPGSG-WPGDPATPQTPVAADA 34
>Y1259_MYCTU (P64785) Hypothetical protein Rv1259/MT1297.1| Length = 268 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = -1 Query: 305 TARCRRSPVKPGMAVWTWRCASPRTPWAASS 213 T R RSPV+PG W A+P+TP AA + Sbjct: 5 TGRAFRSPVEPGSG-WPGDPATPQTPVAADA 34
>ZMY15_HUMAN (Q9H091) Zinc finger MYND domain-containing protein 15| Length = 703 Score = 28.5 bits (62), Expect = 9.1 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 6/94 (6%) Frame = -1 Query: 440 GASRWGTPTARRTPWGARHGSRCTTATTSVGAGRWPCGVAEQTSSTARCRRS--PVKPGM 267 G + WG+ T PW + C + +G+G P + T AR R + P + Sbjct: 229 GTASWGSGTKDLAPWA--YALLCHSMACPMGSGD-PRKPRQLTVGDARLHRELESLVPRL 285 Query: 266 AV----WTWRCASPRTPWAASSPTTNSCSSCHMH 177 V R PR + +S +C CH H Sbjct: 286 GVKLAKTPMRTWGPRPGFTFASLRARTCHVCHRH 319
>DYN_DROME (P27619) Dynamin (EC 3.6.5.5) (dDyn) (Protein shibire)| Length = 877 Score = 28.5 bits (62), Expect = 9.1 Identities = 11/16 (68%), Positives = 11/16 (68%) Frame = -2 Query: 466 PRRTGGGAPVLPAGEP 419 P R GGGAP LP G P Sbjct: 802 PNRPGGGAPPLPGGRP 817 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,958,340 Number of Sequences: 219361 Number of extensions: 1803792 Number of successful extensions: 6137 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 5763 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6128 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
