ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet70c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469397.1| Oryza sativa (japonica cultivar-group), mRNA 129 4e-27
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 129 4e-27
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 129 4e-27
4gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genom... 129 4e-27
5dbj|AK120407.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 4e-27
6gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare str... 74 2e-10
7dbj|AK066881.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 2e-10
8gb|AY109844.1| Zea mays CL2010_1 mRNA sequence 64 2e-07
9gb|U49388.1|ZMU49388 Zea mays adenylosuccinate synthetase mRNA, ... 64 2e-07
10gb|AY106600.1| Zea mays PCO144935 mRNA sequence 60 3e-06
11gb|U49387.1|TAU49387 Triticum aestivum adenylosuccinate syntheta... 54 2e-04
12gb|AY429425.1| Nicotiana tabacum adenylosuccinate synthase (purA... 52 7e-04
13gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, com... 44 0.17
14ref|XM_445601.1| Candida glabrata CBS138, CAGL0D04268g partial mRNA 42 0.69
15emb|CR380950.1| Candida glabrata strain CBS138 chromosome D comp... 42 0.69
16gb|AC143341.8| Medicago truncatula clone mth2-7a11, complete seq... 40 2.7
17emb|BX927156.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 2.7
18emb|AL606991.3|OSJN00113 Oryza sativa genomic DNA, chromosome 4,... 40 2.7
19emb|AJ010405.1|SUL010405 Sulfolobus sp. NOB8H2 conjugative plasm... 40 2.7
20gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 40 2.7
21gb|AC019227.4| Homo sapiens BAC clone RP11-567O18 from 11, compl... 40 2.7
22dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
23dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 2.7
24dbj|AP001183.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 2.7 
>ref|XM_469397.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1470

 Score =  129 bits (65), Expect = 4e-27
 Identities = 128/149 (85%)
 Strand = Plus / Minus

                                                                        
Query: 66   ctatttgtatataagggcatcccggccaggtccaacaccgatgtaatggacaggaatacc 125
            |||||||||||| || ||||| || || ||||| || |||||||||||||| || |||||
Sbjct: 1470 ctatttgtatatgagagcatcacgccctggtcctacgccgatgtaatggactgggatacc 1411

                                                                        
Query: 126  aaccaactcttctatcctctccacgtacagacgagcggtctccgggagatcgtcgtattc 185
            ||||| ||||||||||||||||||||||| |||||| ||||| |||||||||  ||| | 
Sbjct: 1410 aaccagctcttctatcctctccacgtacaaacgagcagtctctgggagatcgctgtagtt 1351

                                         
Query: 186  ccgcaccgaggaaatgtcctcctcccacc 214
             || || ||||||||||| ||||||||||
Sbjct: 1350 tcgtacagaggaaatgtcgtcctcccacc 1322
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  129 bits (65), Expect = 4e-27
 Identities = 128/149 (85%)
 Strand = Plus / Minus

                                                                            
Query: 66       ctatttgtatataagggcatcccggccaggtccaacaccgatgtaatggacaggaatacc 125
                |||||||||||| || ||||| || || ||||| || |||||||||||||| || |||||
Sbjct: 27747375 ctatttgtatatgagagcatcacgccctggtcctacgccgatgtaatggactgggatacc 27747316

                                                                            
Query: 126      aaccaactcttctatcctctccacgtacagacgagcggtctccgggagatcgtcgtattc 185
                ||||| ||||||||||||||||||||||| |||||| ||||| |||||||||  ||| | 
Sbjct: 27747315 aaccagctcttctatcctctccacgtacaaacgagcagtctctgggagatcgctgtagtt 27747256

                                             
Query: 186      ccgcaccgaggaaatgtcctcctcccacc 214
                 || || ||||||||||| ||||||||||
Sbjct: 27747255 tcgtacagaggaaatgtcgtcctcccacc 27747227



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                           
Query: 70      ttgtatataagggcatcccggccaggtccaacaccgatgtaatggacaggaataccaacc 129
               |||||||| || |||||||  |||||||||||||| ||||| ||||| |||| |||||| 
Sbjct: 3968706 ttgtatattagagcatccctcccaggtccaacaccaatgtagtggactggaacaccaaca 3968765

                                
Query: 130     aactcttctatcctctc 146
               | |||||||||||||||
Sbjct: 3968766 agctcttctatcctctc 3968782
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  129 bits (65), Expect = 4e-27
 Identities = 128/149 (85%)
 Strand = Plus / Minus

                                                                            
Query: 66       ctatttgtatataagggcatcccggccaggtccaacaccgatgtaatggacaggaatacc 125
                |||||||||||| || ||||| || || ||||| || |||||||||||||| || |||||
Sbjct: 27838698 ctatttgtatatgagagcatcacgccctggtcctacgccgatgtaatggactgggatacc 27838639

                                                                            
Query: 126      aaccaactcttctatcctctccacgtacagacgagcggtctccgggagatcgtcgtattc 185
                ||||| ||||||||||||||||||||||| |||||| ||||| |||||||||  ||| | 
Sbjct: 27838638 aaccagctcttctatcctctccacgtacaaacgagcagtctctgggagatcgctgtagtt 27838579

                                             
Query: 186      ccgcaccgaggaaatgtcctcctcccacc 214
                 || || ||||||||||| ||||||||||
Sbjct: 27838578 tcgtacagaggaaatgtcgtcctcccacc 27838550



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                           
Query: 70      ttgtatataagggcatcccggccaggtccaacaccgatgtaatggacaggaataccaacc 129
               |||||||| || |||||||  |||||||||||||| ||||| ||||| |||| |||||| 
Sbjct: 3968817 ttgtatattagagcatccctcccaggtccaacaccaatgtagtggactggaacaccaaca 3968876

                                
Query: 130     aactcttctatcctctc 146
               | |||||||||||||||
Sbjct: 3968877 agctcttctatcctctc 3968893
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>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete
             sequence
          Length = 119329

 Score =  129 bits (65), Expect = 4e-27
 Identities = 128/149 (85%)
 Strand = Plus / Plus

                                                                         
Query: 66    ctatttgtatataagggcatcccggccaggtccaacaccgatgtaatggacaggaatacc 125
             |||||||||||| || ||||| || || ||||| || |||||||||||||| || |||||
Sbjct: 66519 ctatttgtatatgagagcatcacgccctggtcctacgccgatgtaatggactgggatacc 66578

                                                                         
Query: 126   aaccaactcttctatcctctccacgtacagacgagcggtctccgggagatcgtcgtattc 185
             ||||| ||||||||||||||||||||||| |||||| ||||| |||||||||  ||| | 
Sbjct: 66579 aaccagctcttctatcctctccacgtacaaacgagcagtctctgggagatcgctgtagtt 66638

                                          
Query: 186   ccgcaccgaggaaatgtcctcctcccacc 214
              || || ||||||||||| ||||||||||
Sbjct: 66639 tcgtacagaggaaatgtcgtcctcccacc 66667
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>dbj|AK120407.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091H09, full
            insert sequence
          Length = 1742

 Score =  129 bits (65), Expect = 4e-27
 Identities = 128/149 (85%)
 Strand = Plus / Minus

                                                                        
Query: 66   ctatttgtatataagggcatcccggccaggtccaacaccgatgtaatggacaggaatacc 125
            |||||||||||| || ||||| || || ||||| || |||||||||||||| || |||||
Sbjct: 1512 ctatttgtatatgagagcatcacgccctggtcctacgccgatgtaatggactgggatacc 1453

                                                                        
Query: 126  aaccaactcttctatcctctccacgtacagacgagcggtctccgggagatcgtcgtattc 185
            ||||| ||||||||||||||||||||||| |||||| ||||| |||||||||  ||| | 
Sbjct: 1452 aaccagctcttctatcctctccacgtacaaacgagcagtctctgggagatcgctgtagtt 1393

                                         
Query: 186  ccgcaccgaggaaatgtcctcctcccacc 214
             || || ||||||||||| ||||||||||
Sbjct: 1392 tcgtacagaggaaatgtcgtcctcccacc 1364
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>gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0061L19, from chromosome 3, complete sequence
          Length = 153322

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                          
Query: 70     ttgtatataagggcatcccggccaggtccaacaccgatgtaatggacaggaataccaacc 129
              |||||||| || |||||||  |||||||||||||| ||||| ||||| |||| |||||| 
Sbjct: 130662 ttgtatattagagcatccctcccaggtccaacaccaatgtagtggactggaacaccaaca 130603

                               
Query: 130    aactcttctatcctctc 146
              | |||||||||||||||
Sbjct: 130602 agctcttctatcctctc 130586
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>dbj|AK066881.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088J03, full
            insert sequence
          Length = 1662

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                        
Query: 70   ttgtatataagggcatcccggccaggtccaacaccgatgtaatggacaggaataccaacc 129
            |||||||| || |||||||  |||||||||||||| ||||| ||||| |||| |||||| 
Sbjct: 1482 ttgtatattagagcatccctcccaggtccaacaccaatgtagtggactggaacaccaaca 1423

                             
Query: 130  aactcttctatcctctc 146
            | |||||||||||||||
Sbjct: 1422 agctcttctatcctctc 1406
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>gb|AY109844.1| Zea mays CL2010_1 mRNA sequence
          Length = 1804

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                        
Query: 70   ttgtatataagggcatcccggccaggtccaacaccgatgtaatggacaggaataccaacc 129
            |||||||| || ||||| | ||||||||||||||| ||||| || || |||| |||||| 
Sbjct: 1468 ttgtatatgagagcatctctgccaggtccaacaccaatgtagtgcacgggaacaccaaca 1409

                                
Query: 130  aactcttctatcctctccac 149
            |  |||||||||||||||||
Sbjct: 1408 agttcttctatcctctccac 1389
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>gb|U49388.1|ZMU49388 Zea mays adenylosuccinate synthetase mRNA, complete cds
          Length = 1835

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                        
Query: 70   ttgtatataagggcatcccggccaggtccaacaccgatgtaatggacaggaataccaacc 129
            |||||||| || ||||| | ||||||||||||||| ||||| || || |||| |||||| 
Sbjct: 1468 ttgtatatgagagcatctctgccaggtccaacaccaatgtagtgcacgggaacaccaaca 1409

                                
Query: 130  aactcttctatcctctccac 149
            |  |||||||||||||||||
Sbjct: 1408 agttcttctatcctctccac 1389
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>gb|AY106600.1| Zea mays PCO144935 mRNA sequence
          Length = 432

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 90/110 (81%)
 Strand = Plus / Minus

                                                                       
Query: 67  tatttgtatataagggcatcccggccaggtccaacaccgatgtaatggacaggaatacca 126
           ||||||||||| ||||| || || ||||| || ||||| ||||| || || ||||| || 
Sbjct: 290 tatttgtatatgagggcgtcgcgtccaggcccgacaccaatgtagtgtactggaatgccg 231

                                                             
Query: 127 accaactcttctatcctctccacgtacagacgagcggtctccgggagatc 176
           ||||  || |||||||||||||||||  ||||||| || || ||||||||
Sbjct: 230 accagttcctctatcctctccacgtagcgacgagctgtttctgggagatc 181
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>gb|U49387.1|TAU49387 Triticum aestivum adenylosuccinate synthetase mRNA, partial cds
          Length = 1741

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                        
Query: 70   ttgtatataagggcatcccggccaggtccaacaccgatgtaatggacaggaataccaacc 129
            |||||||| || |||||||  ||||| || ||||| ||||| ||||| |||| |||  | 
Sbjct: 1427 ttgtatatcagagcatccctcccaggcccgacaccaatgtagtggactggaacaccggcg 1368

                                   
Query: 130  aactcttctatcctctccacgta 152
            | |||||||||||||||||||||
Sbjct: 1367 agctcttctatcctctccacgta 1345
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>gb|AY429425.1| Nicotiana tabacum adenylosuccinate synthase (purA) mRNA, complete cds
          Length = 2009

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 70   ttgtatataagggcatcccggccaggtccaacaccgatgtaatggacagg 119
            ||||| |||||||| || || ||||| |||||||| ||||||||||||||
Sbjct: 1549 ttgtagataagggcgtcacgaccaggcccaacaccaatgtaatggacagg 1500
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>gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence
          Length = 105308

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                           
Query: 70    ttgtatataagggcatcccggccaggtccaacaccgatgtaatgga 115
             ||||| ||||||||||| || |||||||| | ||| ||||||||||
Sbjct: 38750 ttgtagataagggcatcacgaccaggtcctataccaatgtaatgga 38795
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>ref|XM_445601.1| Candida glabrata CBS138, CAGL0D04268g partial mRNA
          Length = 2166

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 11   attgcccaaatgcggatcttttataaata 39
            |||| ||||||||||||||||| ||||||
Sbjct: 1194 attgtccaaatgcggatcttttctaaata 1166
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>emb|CR380950.1| Candida glabrata strain CBS138 chromosome D complete sequence
          Length = 651701

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 11     attgcccaaatgcggatcttttataaata 39
              |||| ||||||||||||||||| ||||||
Sbjct: 419076 attgtccaaatgcggatcttttctaaata 419104
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>gb|AC143341.8| Medicago truncatula clone mth2-7a11, complete sequence
          Length = 111446

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 71/88 (80%)
 Strand = Plus / Minus

                                                                         
Query: 67    tatttgtatataagggcatcccggccaggtccaacaccgatgtaatggacaggaatacca 126
             |||||| |||| || ||||| || ||||| |||||||| ||||| || | ||| | ||||
Sbjct: 66208 tatttgaatatgagagcatcacgtccaggcccaacaccaatgtagtgaatagggacacca 66149

                                         
Query: 127   accaactcttctatcctctccacgtaca 154
             || |  ||||||||||| ||||| ||||
Sbjct: 66148 acgagttcttctatcctttccacataca 66121
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>emb|BX927156.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 9/10
          Length = 349115

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     ccaggtccaacaccgatgta 110
              ||||||||||||||||||||
Sbjct: 130197 ccaggtccaacaccgatgta 130216
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>emb|AL606991.3|OSJN00113 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032B23,
             complete sequence
          Length = 120640

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 40    ataagagacatgtctgaagaaatcctct 67
             |||||||||||| ||||| |||||||||
Sbjct: 39991 ataagagacatggctgaaaaaatcctct 39964
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>emb|AJ010405.1|SUL010405 Sulfolobus sp. NOB8H2 conjugative plasmid pNOB8
          Length = 41229

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 49   atgtctgaagaaatcctcta 68
            ||||||||||||||||||||
Sbjct: 7676 atgtctgaagaaatcctcta 7657
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>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 116     caggaataccaaccaactcttcta 139
               |||||||||| |||||||||||||
Sbjct: 3376754 caggaatacctaccaactcttcta 3376777
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>gb|AC019227.4| Homo sapiens BAC clone RP11-567O18 from 11, complete sequence
          Length = 190314

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     aatcgaaccattgcccaaat 21
             ||||||||||||||||||||
Sbjct: 14447 aatcgaaccattgcccaaat 14428
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 40      ataagagacatgtctgaagaaatcctct 67
               |||||||||||| ||||| |||||||||
Sbjct: 9945041 ataagagacatggctgaaaaaatcctct 9945014
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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 91      ccaggtccaacaccgatgta 110
               ||||||||||||||||||||
Sbjct: 2950478 ccaggtccaacaccgatgta 2950497
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>dbj|AP001183.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-679I18, complete
             sequence
          Length = 174527

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     aatcgaaccattgcccaaat 21
             ||||||||||||||||||||
Sbjct: 77991 aatcgaaccattgcccaaat 77972


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,009,800
Number of Sequences: 3902068
Number of extensions: 2009800
Number of successful extensions: 136514
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 136210
Number of HSP's gapped (non-prelim): 299
length of query: 214
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 192
effective length of database: 17,147,199,772
effective search space: 3292262356224
effective search space used: 3292262356224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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