ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet70c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q300_MOUSE (Q02722) Protein Q300 32 0.53
2ANKK1_MOUSE (Q8BZ25) Ankyrin repeat and protein kinase domain-co... 30 1.6
3PER39_ARATH (Q9SUT2) Peroxidase 39 precursor (EC 1.11.1.7) (Atpe... 30 1.6
4CR023_HUMAN (Q8NB54) Protein C18orf23 30 2.0
5AEGP_RAT (Q63191) Apical endosomal glycoprotein precursor 29 2.6
6SEPT3_MOUSE (Q9Z1S5) Neuronal-specific septin-3 29 2.6
7CRTI_MYXXA (Q02861) Phytoene dehydrogenase (EC 1.14.99.-) (Phyto... 28 4.5
8GLGA_THIDA (Q3SH79) Glycogen synthase (EC 2.4.1.21) (Starch [bac... 28 4.5
9ANKK1_HUMAN (Q8NFD2) Ankyrin repeat and protein kinase domain-co... 28 5.9
10TAN_ASPOR (P78581) Tannase precursor (EC 3.1.1.20) [Contains: Ta... 28 5.9
11PAPC_ECOLI (P07110) Outer membrane usher protein papC precursor 28 7.7

>Q300_MOUSE (Q02722) Protein Q300|
          Length = 77

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 114 WFSYTKIMYACVCQCVCLFRCI 49
           W   T + Y CVC CVC+  C+
Sbjct: 18  WEGETNLFYVCVCVCVCVCVCV 39



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>ANKK1_MOUSE (Q8BZ25) Ankyrin repeat and protein kinase domain-containing|
           protein 1 (EC 2.7.11.1)
          Length = 745

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 189 ATEY*PALVVDSPAYLPDLCALLVSHGLDPDFA 287
           A+ Y P L+       PDLCALL++HG D + A
Sbjct: 401 ASGYTPLLIATQDQQ-PDLCALLLAHGADTNLA 432



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>PER39_ARATH (Q9SUT2) Peroxidase 39 precursor (EC 1.11.1.7) (Atperox P39)|
           (ATP19a)
          Length = 326

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -3

Query: 302 AMENMGKIGVKTMGDQQGAEIRKVCWRVN 216
           +ME MG+IGVKT  D    EIR+ C  VN
Sbjct: 301 SMEKMGRIGVKTGSD---GEIRRTCAFVN 326



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>CR023_HUMAN (Q8NB54) Protein C18orf23|
          Length = 160

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -2

Query: 123 CRCW---FSYTKIMYACVCQCVCLFRCI 49
           C C    ++ ++ + ACVC CVCL+ C+
Sbjct: 42  CLCMTVAYTGSRCLGACVCVCVCLYVCV 69



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>AEGP_RAT (Q63191) Apical endosomal glycoprotein precursor|
          Length = 1216

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 277 GSRPWETSKAQRSGRYAGESTTNAGQYSVAMRGSW 173
           G   W+ ++AQ SG+ A ++  NA  + +++R +W
Sbjct: 508 GKLQWQRAEAQESGKPARDTNRNAPGHFLSLRKAW 542



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>SEPT3_MOUSE (Q9Z1S5) Neuronal-specific septin-3|
          Length = 465

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -2

Query: 117 CWF--SYTKIMYACVCQCVCLFRCI-INK*LCVF 25
           CW+  S    +  CVC CVC++ C+ + +  CV+
Sbjct: 362 CWYLCSILSSVCVCVCVCVCMYVCMCVMESACVY 395



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>CRTI_MYXXA (Q02861) Phytoene dehydrogenase (EC 1.14.99.-) (Phytoene|
           desaturase)
          Length = 529

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = -1

Query: 301 PWRIWAKSGSRPWETSKAQRSGRYAGESTTNAGQYSVAMRGSWPAPC 161
           PWR+      +PW+T   Q  G +  +  T A  Y     G  P  C
Sbjct: 162 PWRLAPTLRFKPWQTLYRQLDGFFHDDRVTYALAYPSKYLGLHPTTC 208



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>GLGA_THIDA (Q3SH79) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial|
           glycogen] synthase)
          Length = 493

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
 Frame = +3

Query: 147 HRGIR-HGAGQLPRIATEY*PALVVDSPAYLPDLCALLVSHGLD---PDFAHILHG 302
           H G+  HG   + +    Y  A+   SP Y  ++C     +GLD       H LHG
Sbjct: 193 HEGVEFHGGFSMLKAGIVYADAVTTVSPTYAEEICTPAFGYGLDGLLRSRRHKLHG 248



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>ANKK1_HUMAN (Q8NFD2) Ankyrin repeat and protein kinase domain-containing|
           protein 1 (EC 2.7.11.1) (Protein kinase PKK2) (X-kinase)
           (SgK288)
          Length = 765

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 189 ATEY*PALVVDSPAYLPDLCALLVSHGLD 275
           A+ Y P L+       PDLCALL++HG D
Sbjct: 393 ASGYTPLLIAAQDQQ-PDLCALLLAHGAD 420



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>TAN_ASPOR (P78581) Tannase precursor (EC 3.1.1.20) [Contains: Tannase 33 kDa|
           subunit; Tannase 30 kDa subunit]
          Length = 588

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -1

Query: 289 WAKSGSRPWETSKAQRSGRYAGESTTNAGQYSVAMRGSWPAPCLIPRWRSN 137
           W ++G++P   +    SG YAGE+          M   WP     P WR N
Sbjct: 523 WVENGNKPSRLNATVSSGTYAGET---------QMLCQWPKR---PLWRGN 561



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>PAPC_ECOLI (P07110) Outer membrane usher protein papC precursor|
          Length = 836

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = -1

Query: 301 PWRIWAKSGSRPWETSKAQRSGRYAGESTTNAGQYSVAMRGSWPAPCL---IPRWRSN 137
           PWR+ A       +   +Q   RY GE TTN          +W    L   IPRWR+N
Sbjct: 207 PWRLRA-------DYQGSQEQSRYNGEKTTN-------RNFTWSRFYLFRAIPRWRAN 250


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,467,110
Number of Sequences: 219361
Number of extensions: 779163
Number of successful extensions: 1747
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1741
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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