| Clone Name | rbaet70c03 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Z49146.1|HVPAL3MR H.vulgare partial PAL mRNA for phenylalanine ammonia-lyase (1831 bp) Length = 1831 Score = 852 bits (430), Expect = 0.0 Identities = 433/434 (99%) Strand = Plus / Minus Query: 15 tagtatgtatatatattgtattatagtaaaagcaaaacattttgcaaagacagtaataca 74 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1814 tagtatgtatatatattgtattatagtaaaagcaaaacattttgcaaagacagtaataca 1755 Query: 75 agcaaaaaagaagccgcgtagtattagcataattcaccccaaaatacaacgacaatatct 134 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1754 agcaaaaaagaagccacgtagtattagcataattcaccccaaaatacaacgacaatatct 1695 Query: 135 gtaggtaaagctgcgggtccgccatggctgagcagctacacaattaacaacacacgtcga 194 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1694 gtaggtaaagctgcgggtccgccatggctgagcagctacacaattaacaacacacgtcga 1635 Query: 195 tcaacaccaacgcacgaacaagtaaaggcaaaagcgacaggaactgaagtaagaacatgc 254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1634 tcaacaccaacgcacgaacaagtaaaggcaaaagcgacaggaactgaagtaagaacatgc 1575 Query: 255 acgaacggattaagcgtcttatttttggatgtactttggaagcctcctcctctcctccac 314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1574 acgaacggattaagcgtcttatttttggatgtactttggaagcctcctcctctcctccac 1515 Query: 315 ggtggcacggacgatccttcagacgttgatgggcaggggctcgccgttccactccttgag 374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1514 ggtggcacggacgatccttcagacgttgatgggcaggggctcgccgttccactccttgag 1455 Query: 375 gcactcgagcatggggtcgatgagcttgttctggctgatgccgaggaagaccttggtgca 434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1454 gcactcgagcatggggtcgatgagcttgttctggctgatgccgaggaagaccttggtgca 1395 Query: 435 ttcctcgccggggg 448 |||||||||||||| Sbjct: 1394 ttcctcgccggggg 1381
>gb|AY973992.1| Bambusa ventricosa putative phenylalanine ammonia-lyase mRNA, complete cds Length = 2353 Score = 170 bits (86), Expect = 2e-39 Identities = 104/110 (94%) Strand = Plus / Minus Query: 339 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2104 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 2045 Query: 399 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccggggg 448 |||| |||||||||||||| ||| |||||| |||| ||||||||||||| Sbjct: 2044 cttgccctggctgatgccgatgaacaccttgttgcactcctcgccggggg 1995
>ref|XM_466843.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2502 Score = 163 bits (82), Expect = 6e-37 Identities = 103/110 (93%) Strand = Plus / Minus Query: 339 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 398 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 2189 gttgatgggaaggggctcgccgttccactccttgaggcagtcgagcatggggtcgatgag 2130 Query: 399 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccggggg 448 |||| |||||||||||||||||| |||||| |||| ||||||||||||| Sbjct: 2129 cttgccctggctgatgccgaggaacaccttgttgcactcctcgccggggg 2080
>emb|X16099.1|OSPAL Rice gene for phenylalanine ammonia-lyase (EC 4.3.1.5) Length = 4412 Score = 163 bits (82), Expect = 6e-37 Identities = 103/110 (93%) Strand = Plus / Minus Query: 339 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 398 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 4066 gttgatgggaaggggctcgccgttccactccttgaggcagtcgagcatggggtcgatgag 4007 Query: 399 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccggggg 448 |||| |||||||||||||||||| |||||| |||| ||||||||||||| Sbjct: 4006 cttgccctggctgatgccgaggaacaccttgttgcactcctcgccggggg 3957
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 163 bits (82), Expect = 6e-37 Identities = 103/110 (93%) Strand = Plus / Plus Query: 339 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 398 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 24992256 gttgatgggaaggggctcgccgttccactccttgaggcagtcgagcatggggtcgatgag 24992315 Query: 399 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccggggg 448 |||| |||||||||||||||||| |||||| |||| ||||||||||||| Sbjct: 24992316 cttgccctggctgatgccgaggaacaccttgttgcactcctcgccggggg 24992365 Score = 89.7 bits (45), Expect = 7e-15 Identities = 54/57 (94%) Strand = Plus / Plus Query: 346 ggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagcttg 402 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 25025228 ggcaggggctcgccgttccactccttgaggcactcgagcaacgggtcgatgtgcttg 25025284 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 342 gatgggcaggggctcgccgttccactccttgaggcactcgagca 385 ||||||||||||| ||||||||||||||||||| ||||| |||| Sbjct: 25011629 gatgggcaggggcgcgccgttccactccttgagacactcaagca 25011672 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Plus Query: 346 ggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagcttg 402 ||||| ||| |||| ||||| ||||||||||| ||||||| ||||||||| ||||| Sbjct: 25004085 ggcagtggcgcgccattccattccttgaggcattcgagcagcgggtcgatgtgcttg 25004141
>dbj|AP005000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0042D01 Length = 148305 Score = 163 bits (82), Expect = 6e-37 Identities = 103/110 (93%) Strand = Plus / Plus Query: 339 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 398 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 5244 gttgatgggaaggggctcgccgttccactccttgaggcagtcgagcatggggtcgatgag 5303 Query: 399 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccggggg 448 |||| |||||||||||||||||| |||||| |||| ||||||||||||| Sbjct: 5304 cttgccctggctgatgccgaggaacaccttgttgcactcctcgccggggg 5353 Score = 89.7 bits (45), Expect = 7e-15 Identities = 54/57 (94%) Strand = Plus / Plus Query: 346 ggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagcttg 402 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 38216 ggcaggggctcgccgttccactccttgaggcactcgagcaacgggtcgatgtgcttg 38272 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 342 gatgggcaggggctcgccgttccactccttgaggcactcgagca 385 ||||||||||||| ||||||||||||||||||| ||||| |||| Sbjct: 24617 gatgggcaggggcgcgccgttccactccttgagacactcaagca 24660 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Plus Query: 346 ggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagcttg 402 ||||| ||| |||| ||||| ||||||||||| ||||||| ||||||||| ||||| Sbjct: 17073 ggcagtggcgcgccattccattccttgaggcattcgagcagcgggtcgatgtgcttg 17129
>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1215B07 Length = 165957 Score = 163 bits (82), Expect = 6e-37 Identities = 103/110 (93%) Strand = Plus / Plus Query: 339 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 398 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 153539 gttgatgggaaggggctcgccgttccactccttgaggcagtcgagcatggggtcgatgag 153598 Query: 399 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccggggg 448 |||| |||||||||||||||||| |||||| |||| ||||||||||||| Sbjct: 153599 cttgccctggctgatgccgaggaacaccttgttgcactcctcgccggggg 153648 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Plus Query: 346 ggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagcttg 402 ||||| ||| |||| ||||| ||||||||||| ||||||| ||||||||| ||||| Sbjct: 165368 ggcagtggcgcgccattccattccttgaggcattcgagcagcgggtcgatgtgcttg 165424
>dbj|AK102817.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108N04, full insert sequence Length = 2504 Score = 163 bits (82), Expect = 6e-37 Identities = 103/110 (93%) Strand = Plus / Minus Query: 339 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 398 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 2191 gttgatgggaaggggctcgccgttccactccttgaggcagtcgagcatggggtcgatgag 2132 Query: 399 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccggggg 448 |||| |||||||||||||||||| |||||| |||| ||||||||||||| Sbjct: 2131 cttgccctggctgatgccgaggaacaccttgttgcactcctcgccggggg 2082
>dbj|AK058306.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H03, full insert sequence Length = 1298 Score = 163 bits (82), Expect = 6e-37 Identities = 103/110 (93%) Strand = Plus / Minus Query: 339 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 398 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 983 gttgatgggaaggggctcgccgttccactccttgaggcagtcgagcatggggtcgatgag 924 Query: 399 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccggggg 448 |||| |||||||||||||||||| |||||| |||| ||||||||||||| Sbjct: 923 cttgccctggctgatgccgaggaacaccttgttgcactcctcgccggggg 874
>dbj|AK067923.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013126B03, full insert sequence Length = 1531 Score = 155 bits (78), Expect = 1e-34 Identities = 102/110 (92%) Strand = Plus / Minus Query: 339 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 398 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1218 gttgatgggaaggggctcgccgttccactccttgaggcagtcgagcatggggtcgatgag 1159 Query: 399 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccggggg 448 |||| |||||||||||||||||| |||||| |||| ||| ||||||||| Sbjct: 1158 cttgccctggctgatgccgaggaacaccttgttgcactccccgccggggg 1109
>ref|XM_473192.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2124 Score = 141 bits (71), Expect = 2e-30 Identities = 98/107 (91%) Strand = Plus / Minus Query: 342 gatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagctt 401 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 2118 gatgggcaggggctcgccgttccactccttgaggcactcgagcatcgggtcgatgagctt 2059 Query: 402 gttctggctgatgccgaggaagaccttggtgcattcctcgccggggg 448 | || ||||||| | ||||| |||||| |||| ||||||||||||| Sbjct: 2058 gcgctcgctgatggccaggaacaccttgttgcactcctcgccggggg 2012
>gb|AY224546.1| Oryza sativa (japonica cultivar-group) isolate 24080 phenylalanine ammonia-lyase mRNA, complete cds Length = 2016 Score = 141 bits (71), Expect = 2e-30 Identities = 98/107 (91%) Strand = Plus / Minus Query: 342 gatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagctt 401 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 2010 gatgggcaggggctcgccgttccactccttgaggcactcgagcatcgggtcgatgagctt 1951 Query: 402 gttctggctgatgccgaggaagaccttggtgcattcctcgccggggg 448 | || ||||||| | ||||| |||||| |||| ||||||||||||| Sbjct: 1950 gcgctcgctgatggccaggaacaccttgttgcactcctcgccggggg 1904
>emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073E02, complete sequence Length = 139080 Score = 141 bits (71), Expect = 2e-30 Identities = 98/107 (91%) Strand = Plus / Plus Query: 342 gatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagctt 401 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 98032 gatgggcaggggctcgccgttccactccttgaggcactcgagcatcgggtcgatgagctt 98091 Query: 402 gttctggctgatgccgaggaagaccttggtgcattcctcgccggggg 448 | || ||||||| | ||||| |||||| |||| ||||||||||||| Sbjct: 98092 gcgctcgctgatggccaggaacaccttgttgcactcctcgccggggg 98138 Score = 81.8 bits (41), Expect = 2e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 342 gatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagctt 401 ||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||| Sbjct: 118218 gatgggcagaggctcgccgttccactccttgaggcactcgagcagtgcgtcgatgtgctt 118277 Query: 402 g 402 | Sbjct: 118278 g 118278
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 141 bits (71), Expect = 2e-30 Identities = 98/107 (91%) Strand = Plus / Plus Query: 342 gatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagctt 401 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 25880622 gatgggcaggggctcgccgttccactccttgaggcactcgagcatcgggtcgatgagctt 25880681 Query: 402 gttctggctgatgccgaggaagaccttggtgcattcctcgccggggg 448 | || ||||||| | ||||| |||||| |||| ||||||||||||| Sbjct: 25880682 gcgctcgctgatggccaggaacaccttgttgcactcctcgccggggg 25880728 Score = 81.8 bits (41), Expect = 2e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 342 gatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagctt 401 ||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||| Sbjct: 25900808 gatgggcagaggctcgccgttccactccttgaggcactcgagcagtgcgtcgatgtgctt 25900867 Query: 402 g 402 | Sbjct: 25900868 g 25900868
>dbj|AK100346.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082J11, full insert sequence Length = 2510 Score = 141 bits (71), Expect = 2e-30 Identities = 98/107 (91%) Strand = Plus / Minus Query: 342 gatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagctt 401 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 2210 gatgggcaggggctcgccgttccactccttgaggcactcgagcatcgggtcgatgagctt 2151 Query: 402 gttctggctgatgccgaggaagaccttggtgcattcctcgccggggg 448 | || ||||||| | ||||| |||||| |||| ||||||||||||| Sbjct: 2150 gcgctcgctgatggccaggaacaccttgttgcactcctcgccggggg 2104
>emb|AL731629.2|OSJN00274 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0061C13, complete sequence Length = 139226 Score = 141 bits (71), Expect = 2e-30 Identities = 98/107 (91%) Strand = Plus / Plus Query: 342 gatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagctt 401 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 6884 gatgggcaggggctcgccgttccactccttgaggcactcgagcatcgggtcgatgagctt 6943 Query: 402 gttctggctgatgccgaggaagaccttggtgcattcctcgccggggg 448 | || ||||||| | ||||| |||||| |||| ||||||||||||| Sbjct: 6944 gcgctcgctgatggccaggaacaccttgttgcactcctcgccggggg 6990 Score = 81.8 bits (41), Expect = 2e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 342 gatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagctt 401 ||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||| Sbjct: 27070 gatgggcagaggctcgccgttccactccttgaggcactcgagcagtgcgtcgatgtgctt 27129 Query: 402 g 402 | Sbjct: 27130 g 27130
>gb|AY103647.1| Zea mays PCO142084 mRNA sequence Length = 2598 Score = 137 bits (69), Expect = 3e-29 Identities = 102/113 (90%) Strand = Plus / Minus Query: 336 gacgttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgat 395 ||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | Sbjct: 2215 gacgttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccac 2156 Query: 396 gagcttgttctggctgatgccgaggaagaccttggtgcattcctcgccggggg 448 ||||||| |||||||||||||| ||| |||||| |||| ||||||||||||| Sbjct: 2155 gagcttgccctggctgatgccgacgaacaccttgttgcactcctcgccggggg 2103
>gb|M95077.1|MZEORFR Zea mays putative phenylalanine ammonia lyase mRNA, partial cds Length = 190 Score = 137 bits (69), Expect = 3e-29 Identities = 102/113 (90%) Strand = Plus / Minus Query: 336 gacgttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgat 395 ||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | Sbjct: 181 gacgttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccac 122 Query: 396 gagcttgttctggctgatgccgaggaagaccttggtgcattcctcgccggggg 448 ||||||| |||||||||||||| ||| |||||| |||| ||||||||||||| Sbjct: 121 gagcttgccctggctgatgccgacgaacaccttgttgcactcctcgccggggg 69
>gb|L77912.1|MZEPAL Zea mays phenylalanine ammonia-lyase mRNA, complete cds Length = 2488 Score = 131 bits (66), Expect = 2e-27 Identities = 99/110 (90%) Strand = Plus / Minus Query: 339 gttgatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgag 398 |||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | ||| Sbjct: 2216 gttgatgggcagcggcttgccgtcccactccttgaggcactcgagcatggggtccacgag 2157 Query: 399 cttgttctggctgatgccgaggaagaccttggtgcattcctcgccggggg 448 |||| |||||||||||||| ||| |||||| |||| ||||||||||||| Sbjct: 2156 cttgccctggctgatgccgacgaacaccttgttgcactcctcgccggggg 2107
>gb|AY106831.1| Zea mays PCO142079 mRNA sequence Length = 2299 Score = 117 bits (59), Expect = 3e-23 Identities = 95/107 (88%) Strand = Plus / Minus Query: 342 gatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagctt 401 |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct: 1968 gatgggcaggggcttgccgtcccactccttgaggcagtcgagcatggggtcgatgagctt 1909 Query: 402 gttctggctgatgccgaggaagaccttggtgcattcctcgccggggg 448 | || ||||| | | ||||| |||||| |||| ||||||||||||| Sbjct: 1908 gccctcgctgagggccaggaacaccttgttgcactcctcgccggggg 1862
>ref|XM_466849.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2407 Score = 89.7 bits (45), Expect = 7e-15 Identities = 54/57 (94%) Strand = Plus / Minus Query: 346 ggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagcttg 402 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 2167 ggcaggggctcgccgttccactccttgaggcactcgagcaacgggtcgatgtgcttg 2111
>emb|X87946.1|OSDNAZB8 O.sativa ZB8 gene Length = 4660 Score = 89.7 bits (45), Expect = 7e-15 Identities = 54/57 (94%) Strand = Plus / Minus Query: 346 ggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagcttg 402 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 4566 ggcaggggctcgccgttccactccttgaggcactcgagcaacgggtcgatgtgcttg 4510
>dbj|AK068993.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001A06, full insert sequence Length = 2406 Score = 89.7 bits (45), Expect = 7e-15 Identities = 54/57 (94%) Strand = Plus / Minus Query: 346 ggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagcttg 402 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 2166 ggcaggggctcgccgttccactccttgaggcactcgagcaacgggtcgatgtgcttg 2110
>ref|XM_473196.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2145 Score = 81.8 bits (41), Expect = 2e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 342 gatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagctt 401 ||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||| Sbjct: 2139 gatgggcagaggctcgccgttccactccttgaggcactcgagcagtgcgtcgatgtgctt 2080 Query: 402 g 402 | Sbjct: 2079 g 2079
>gb|BT018802.1| Zea mays clone EL01N0529D05.d mRNA sequence Length = 1451 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 346 ggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagcttg 402 ||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 1116 ggcaggggcgcgccgttccactccttgaggcactcgagcagcgggtcgatgtgcttg 1060
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 81.8 bits (41), Expect = 2e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 342 gatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagctt 401 ||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||| Sbjct: 16320140 gatgggcagaggctcgccgttccactccttgaggcactcgagcagtgcgtcgatgtgctt 16320199 Query: 402 g 402 | Sbjct: 16320200 g 16320200 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 ataattcaccccaaaatacaacga 126 ||||||||||||||| |||||||| Sbjct: 10527685 ataattcaccccaaattacaacga 10527708
>gb|AY005474.1| Triticum aestivum inducible phenylalanine ammonia-lyase mRNA, partial cds Length = 1933 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 346 ggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagcttg 402 ||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| Sbjct: 1625 ggcaggggctcgccgttccactccttgaggcactccagcagcgggtcgatgtgcttg 1569
>dbj|AK067801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118I15, full insert sequence Length = 2551 Score = 81.8 bits (41), Expect = 2e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 342 gatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagctt 401 ||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||| Sbjct: 2264 gatgggcagaggctcgccgttccactccttgaggcactcgagcagtgcgtcgatgtgctt 2205 Query: 402 g 402 | Sbjct: 2204 g 2204
>gb|AY104679.1| Zea mays PCO142078 mRNA sequence Length = 1864 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 346 ggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagcttg 402 ||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 1562 ggcaggggcgcgccgttccactccttgaggcactcgagcagcgggtcgatgtgcttg 1506
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 81.8 bits (41), Expect = 2e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 342 gatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagctt 401 ||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||| Sbjct: 16273373 gatgggcagaggctcgccgttccactccttgaggcactcgagcagtgcgtcgatgtgctt 16273432 Query: 402 g 402 | Sbjct: 16273433 g 16273433 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 ataattcaccccaaaatacaacga 126 ||||||||||||||| |||||||| Sbjct: 10527567 ataattcaccccaaattacaacga 10527590
>emb|AL732380.4|CNS08C93 Oryza sativa chromosome 12, . BAC OSJNBb0119N22 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 79613 Score = 81.8 bits (41), Expect = 2e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 342 gatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagctt 401 ||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||| Sbjct: 67191 gatgggcagaggctcgccgttccactccttgaggcactcgagcagtgcgtcgatgtgctt 67250 Query: 402 g 402 | Sbjct: 67251 g 67251
>gb|AY450643.1| Bambusa oldhamii phenylalanine ammonia-lyase (PAL1) mRNA, complete cds Length = 2139 Score = 79.8 bits (40), Expect = 7e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 342 gatgggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagctt 401 ||||||||| ||||||||||||||||||||||||||||| |||| ||||| ||| |||| Sbjct: 2133 gatgggcagtggctcgccgttccactccttgaggcactcaagcagcgggtcaatgtgctt 2074 Query: 402 gttctggctgatgccgagga 421 | |||| ||||| |||||| Sbjct: 2073 gccctggttgatggcgagga 2054
>ref|XM_475254.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2151 Score = 73.8 bits (37), Expect = 4e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 346 ggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagcttg 402 ||||| ||| |||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 2141 ggcagtggcgcgccgttccactccttgaggcactcgagcagcgggtcgatgtgcttg 2085
>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0044P19, complete sequence Length = 176917 Score = 73.8 bits (37), Expect = 4e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 346 ggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagcttg 402 ||||| ||| |||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 122631 ggcagtggcgcgccgttccactccttgaggcactcgagcagcgggtcgatgtgcttg 122687
>gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636F09, complete sequence Length = 177374 Score = 73.8 bits (37), Expect = 4e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 346 ggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagcttg 402 ||||| ||| |||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 65212 ggcagtggcgcgccgttccactccttgaggcactcgagcagcgggtcgatgtgcttg 65268
>emb|X99705.1|TAPALGEN1 T.aestivum PAL gene Length = 3444 Score = 73.8 bits (37), Expect = 4e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 346 ggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagcttg 402 ||||||||||||||||||||||||||||||||||| |||| | ||||||| ||||| Sbjct: 3097 ggcaggggctcgccgttccactccttgaggcactccagcagcgcgtcgatgtgcttg 3041
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 73.8 bits (37), Expect = 4e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 346 ggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagcttg 402 ||||| ||| |||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 20809407 ggcagtggcgcgccgttccactccttgaggcactcgagcagcgggtcgatgtgcttg 20809463 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 aaaatacaacgacaatatct 134 |||||||||||||||||||| Sbjct: 7843191 aaaatacaacgacaatatct 7843172
>emb|X99725.1|TAPALGEN2 T.aestivum PAL gene, coding region Length = 1419 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Minus Query: 346 ggcaggggctcgccgttccactccttgaggcactcgagca 385 ||||||||||||||||||||||||||||||||||| |||| Sbjct: 1011 ggcaggggctcgccgttccactccttgaggcactcaagca 972
>ref|XM_466846.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2142 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 342 gatgggcaggggctcgccgttccactccttgaggcactcgagca 385 ||||||||||||| ||||||||||||||||||| ||||| |||| Sbjct: 2136 gatgggcaggggcgcgccgttccactccttgagacactcaagca 2093
>gb|L11883.1|WHTWALI4A Triticum aestivum phenylalanine ammonia-lyase (wali4) mRNA, 3' end, partial cds Length = 634 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 349 aggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagcttg 402 |||||||||||||||||||||||||| ||||| |||| | ||||||| ||||| Sbjct: 376 aggggctcgccgttccactccttgagacactccagcagcgcgtcgatgtgcttg 323
>ref|XM_466845.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2369 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 346 ggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagcttg 402 ||||| ||| |||| ||||| ||||||||||| ||||||| ||||||||| ||||| Sbjct: 2296 ggcagtggcgcgccattccattccttgaggcattcgagcagcgggtcgatgtgcttg 2240
>dbj|AK120127.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026F02, full insert sequence Length = 2594 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 346 ggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagcttg 402 ||||| ||| |||| ||||| ||||||||||| ||||||| ||||||||| ||||| Sbjct: 2296 ggcagtggcgcgccattccattccttgaggcattcgagcagcgggtcgatgtgcttg 2240
>emb|Z15085.1|OSGP28G O.sativa GP28 gene (partial) Length = 4843 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 346 ggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagcttg 402 ||||| ||| |||| ||||| ||||||||||| ||||||| ||||||||| ||||| Sbjct: 4725 ggcagtggcgcgccattccattccttgaggcattcgagcagcgggtcgatgtgcttg 4669
>emb|X99483.1|HVPAL6 H.vulgare mRNA for phenylalanine ammonia-lyase, pal6 Length = 1251 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 346 ggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagcttg 402 ||||| |||||||| ||||||||||||||||| || |||| | ||||||| ||||| Sbjct: 1046 ggcagaggctcgccattccactccttgaggcattccagcagcgcgtcgatgtgcttg 990
>dbj|AK065208.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002F15, full insert sequence Length = 1835 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 346 ggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagcttg 402 ||||| ||| |||| ||||| ||||||||||| ||||||| ||||||||| ||||| Sbjct: 1537 ggcagtggcgcgccattccattccttgaggcattcgagcagcgggtcgatgtgcttg 1481
>dbj|AK061959.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-G01, full insert sequence Length = 1589 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 346 ggcaggggctcgccgttccactccttgaggcactcgagcatggggtcgatgagcttg 402 ||||| ||| |||| ||||| ||||||||||| ||||||| ||||||||| ||||| Sbjct: 1253 ggcagtggcgcgccattccattccttgaggcattcgagcagcgggtcgatgtgcttg 1197
>gb|AC129351.6| Homo sapiens 12 BAC RP11-466G11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161618 Score = 46.1 bits (23), Expect = 0.098 Identities = 26/27 (96%) Strand = Plus / Minus Query: 13 tgtagtatgtatatatattgtattata 39 |||| |||||||||||||||||||||| Sbjct: 127843 tgtattatgtatatatattgtattata 127817
>gb|AC129675.6| Homo sapiens 12 BAC RP11-310A24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 112495 Score = 46.1 bits (23), Expect = 0.098 Identities = 26/27 (96%) Strand = Plus / Minus Query: 13 tgtagtatgtatatatattgtattata 39 |||| |||||||||||||||||||||| Sbjct: 78795 tgtattatgtatatatattgtattata 78769
>emb|Z49145.1|HVPAL2MR H.vulgare partial PAL mRNA for phenylalanine ammonia-lyase (1670 bp) Length = 1670 Score = 46.1 bits (23), Expect = 0.098 Identities = 32/35 (91%) Strand = Plus / Minus Query: 346 ggcaggggctcgccgttccactccttgaggcactc 380 ||||||||||| || ||||||||||| |||||||| Sbjct: 1420 ggcaggggctcaccattccactccttcaggcactc 1386
>gb|AE014840.1| Plasmodium falciparum 3D7 chromosome 11 section 5 of 8 of the complete sequence Length = 249995 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 atgtatatatattgtattata 39 ||||||||||||||||||||| Sbjct: 60529 atgtatatatattgtattata 60549
>ref|XR_005088.1| PREDICTED: Mus musculus hypothetical protein LOC677558 (LOC677558), mRNA Length = 1008 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 atttttggatgtactttggaa 295 ||||||||||||||||||||| Sbjct: 951 atttttggatgtactttggaa 971
>ref|XR_004983.1| PREDICTED: Mus musculus similar to preferentially expressed antigen in melanoma like 5 (LOC676880), mRNA Length = 1639 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 atttttggatgtactttggaa 295 ||||||||||||||||||||| Sbjct: 1582 atttttggatgtactttggaa 1602
>ref|XM_112266.6| PREDICTED: Mus musculus similar to preferentially expressed antigen in melanoma like 5 (LOC195555), mRNA Length = 1636 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 atttttggatgtactttggaa 295 ||||||||||||||||||||| Sbjct: 1579 atttttggatgtactttggaa 1599
>ref|XM_205435.6| PREDICTED: Mus musculus similar to preferentially expressed antigen in melanoma like 5 (LOC279185), mRNA Length = 1636 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 atttttggatgtactttggaa 295 ||||||||||||||||||||| Sbjct: 1579 atttttggatgtactttggaa 1599
>ref|XM_539018.2| PREDICTED: Canis familiaris similar to inhibitor of Brutons tyrosine kinase (LOC481897), mRNA Length = 4215 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 aagcaaaaaagaagccgcgta 94 ||||||||||||||||||||| Sbjct: 3098 aagcaaaaaagaagccgcgta 3118
>gb|AC098888.4| Mus musculus BAC clone RP23-122N8 from 8, complete sequence Length = 229247 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 11 aatgtagtatgtatatatattgtattata 39 |||||||||||||||||| ||||||||| Sbjct: 175295 aatgtagtatgtatatattatgtattata 175267
>gb|AC129623.4| Homo sapiens 12 BAC CTD-2107C6 (Cal Tech Human BAC Library D) complete sequence Length = 133581 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 97 attagcataattcaccccaaaatac 121 ||||||||| ||||||||||||||| Sbjct: 78789 attagcatatttcaccccaaaatac 78765
>emb|BX005100.9| Mouse DNA sequence from clone RP23-76P22 on chromosome 11 Contains part of the gene for a novel protein (C230094A16Rik), the gene for a novel protein (4931440F15Rik) similar to Mus musculus feminization 1 homolog a (C. elegans) (Fem1a), a ribosomal protein L23 (Rpl23) pseudogene, a preferentially expressed antigen in melanoma like 5 (Pramel5) pseudogene and a CpG island, complete sequence Length = 193116 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 atttttggatgtactttggaa 295 ||||||||||||||||||||| Sbjct: 174370 atttttggatgtactttggaa 174390
>gb|AC074237.4| Homo sapiens chromosome 18, clone RP11-333K18, complete sequence Length = 181390 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 97 attagcataattcaccccaaaatac 121 ||||||||| ||||||||||||||| Sbjct: 53072 attagcatatttcaccccaaaatac 53048
>gb|AY036011.1| Manihot esculenta phenylalanine ammonia-lyase 1 (PAL1) mRNA, complete cds Length = 2253 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 361 ttccactccttgaggcactcgagcatggg 389 ||||||||||||||||| || |||||||| Sbjct: 2185 ttccactccttgaggcattcaagcatggg 2157
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 ggaagcctcctcctctcctcc 312 ||||||||||||||||||||| Sbjct: 7993897 ggaagcctcctcctctcctcc 7993917
>dbj|AP006235.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0017N10 Length = 168535 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 ggaagcctcctcctctcctcc 312 ||||||||||||||||||||| Sbjct: 106540 ggaagcctcctcctctcctcc 106560
>dbj|AP005876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0092O08 Length = 145596 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 ggaagcctcctcctctcctcc 312 ||||||||||||||||||||| Sbjct: 9002 ggaagcctcctcctctcctcc 9022
>gb|AC116769.11| Mus musculus chromosome 15, clone RP23-415L16, complete sequence Length = 201535 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 287 actttggaagcctcctcctct 307 ||||||||||||||||||||| Sbjct: 44602 actttggaagcctcctcctct 44582
>gb|AY098511.1| Ananas comosus phenylalanine ammonia-lyase mRNA, partial cds Length = 1110 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 361 ttccactccttgaggcactcgagcatggg 389 ||||||||||| | ||||||||||||||| Sbjct: 864 ttccactccttcaagcactcgagcatggg 836
>emb|AL626771.9| Mouse DNA sequence from clone RP23-281O10 on chromosome 4, complete sequence Length = 185594 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 atttttggatgtactttggaa 295 ||||||||||||||||||||| Sbjct: 42223 atttttggatgtactttggaa 42243
>emb|AL713865.10| Mouse DNA sequence from clone RP23-451D4 on chromosome 4, complete sequence Length = 172962 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 atttttggatgtactttggaa 295 ||||||||||||||||||||| Sbjct: 147699 atttttggatgtactttggaa 147719 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 atttttggatgtactttggaa 295 ||||||||||||||||||||| Sbjct: 36754 atttttggatgtactttggaa 36774
>gb|AC168206.7| Mus musculus chromosome 1, clone RP23-17B20, complete sequence Length = 245358 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 attatagtaaaagcaaaaca 53 |||||||||||||||||||| Sbjct: 234097 attatagtaaaagcaaaaca 234116
>gb|AC099582.7| Mus musculus chromosome 1, clone RP23-188D7, complete sequence Length = 192016 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 attatagtaaaagcaaaaca 53 |||||||||||||||||||| Sbjct: 44899 attatagtaaaagcaaaaca 44880
>gb|AC145477.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1402B06, complete sequence Length = 134001 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 aaaatacaacgacaatatct 134 |||||||||||||||||||| Sbjct: 120777 aaaatacaacgacaatatct 120758
>gb|AC115035.5| Mus musculus chromosome 3, clone RP24-273F11, complete sequence Length = 131719 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 atgtagtatgtatatatatt 31 |||||||||||||||||||| Sbjct: 50147 atgtagtatgtatatatatt 50166
>gb|BC070761.1| Xenopus laevis hypothetical protein MGC83782, mRNA (cDNA clone MGC:83782 IMAGE:6641157), complete cds Length = 4636 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 41 taaaagcaaaacattttgcaaaga 64 ||||||| |||||||||||||||| Sbjct: 4081 taaaagctaaacattttgcaaaga 4104
>gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0042F15, complete sequence Length = 162959 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 aaaatacaacgacaatatct 134 |||||||||||||||||||| Sbjct: 27966 aaaatacaacgacaatatct 27947
>gb|AC162790.2| Mus musculus chromosome 3, clone RP24-397C18, complete sequence Length = 169244 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 atgtagtatgtatatatatt 31 |||||||||||||||||||| Sbjct: 54454 atgtagtatgtatatatatt 54435
>gb|AC073258.9| Homo sapiens BAC clone RP11-221B19 from 7, complete sequence Length = 156127 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 atagtaaaagcaaaacattt 56 |||||||||||||||||||| Sbjct: 143720 atagtaaaagcaaaacattt 143701
>gb|AC129198.3| Mus musculus BAC clone RP24-183I4 from chromosome 15, complete sequence Length = 165791 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 atgtagtatgtatatatattgtat 35 ||||| |||||||||||||||||| Sbjct: 26254 atgtattatgtatatatattgtat 26231
>gb|AC099413.3| Mus musculus BAC clone RP23-2O10 from 4, complete sequence Length = 208798 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 agtatgtatatatattgtat 35 |||||||||||||||||||| Sbjct: 183148 agtatgtatatatattgtat 183129
>gb|AC114916.5| Mus musculus BAC clone RP23-68E10 from 15, complete sequence Length = 207411 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 atgtagtatgtatatatattgtat 35 ||||| |||||||||||||||||| Sbjct: 4176 atgtattatgtatatatattgtat 4199
>gb|AC099342.5| Homo sapiens BAC clone RP11-323F6 from 7, complete sequence Length = 29752 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 taattcaccccaaaatacaa 123 |||||||||||||||||||| Sbjct: 1408 taattcaccccaaaatacaa 1427
>gb|AC005083.1| Homo sapiens BAC clone CTA-281G5 from 7, complete sequence Length = 146285 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 taattcaccccaaaatacaa 123 |||||||||||||||||||| Sbjct: 593 taattcaccccaaaatacaa 574
>emb|AL596223.3| Human DNA sequence from clone RP11-227H15 on chromosome 10 Contains 3' end of the VPS26 gene for vacuolar protein sorting 26 (yeast) (HB58, Hbeta58, FLJ12930), the SUPV3L1 gene for suppressor of var1, 3-like 1 (S. cerevisiae)(SUV3), the gene for a novel hexokinase domain containing protein (FLJ37767), the 5' end of the HK1 gene for hexokinase 1 (HKI, HXK1), two novel genes, a ribosomal protein S15a (RPS15A) pseudogene and two CpG islands, complete sequence Length = 180548 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 cataattcaccccaaaatac 121 |||||||||||||||||||| Sbjct: 144030 cataattcaccccaaaatac 144011
>emb|AL356096.11| Human DNA sequence from clone RP11-366K1 on chromosome 13 Contains a novel gene and a CpG island, complete sequence Length = 190101 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 tatattgtattatagtaaaa 45 |||||||||||||||||||| Sbjct: 81640 tatattgtattatagtaaaa 81659
>emb|AL031906.1|HS90O12 Human DNA sequence from clone RP1-90O12 on chromosome 6p24.1-25.1, complete sequence Length = 99035 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 atgtagtatgtatatatattgtat 35 |||||||||||||||||| ||||| Sbjct: 56050 atgtagtatgtatatataatgtat 56073
>emb|CR450810.5| Zebrafish DNA sequence from clone CH211-156N19 in linkage group 3, complete sequence Length = 45749 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 gtatgtatatatattgtatt 36 |||||||||||||||||||| Sbjct: 11447 gtatgtatatatattgtatt 11428
>emb|X79047.1|EC12TCGWT Echovirus type 12, prototype Travis wild type genome Length = 7501 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 gcaaaacattttgcaaagac 65 |||||||||||||||||||| Sbjct: 1402 gcaaaacattttgcaaagac 1421
>emb|X61581.1|DDPROFLI D.discoideum mRNA for profilin I Length = 521 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 gtatgtatatatattgtatt 36 |||||||||||||||||||| Sbjct: 23 gtatgtatatatattgtatt 4
>emb|AL034557.8|PFMAL4P1 Plasmodium falciparum MAL4P1 Length = 347582 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 22 tatatatattgtattatagtaaaagcaa 49 |||||||| | ||||||||||||||||| Sbjct: 127464 tatatataatatattatagtaaaagcaa 127491
>emb|BX530064.8| Zebrafish DNA sequence from clone CH211-232M19 in linkage group 16, complete sequence Length = 153572 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 atatattgtattatagtaaa 44 |||||||||||||||||||| Sbjct: 135971 atatattgtattatagtaaa 135990
>emb|BX005068.13| Zebrafish DNA sequence from clone DKEY-40H17 in linkage group 1, complete sequence Length = 215007 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 taattcaccccaaaatacaa 123 |||||||||||||||||||| Sbjct: 183379 taattcaccccaaaatacaa 183360
>gb|AC027489.8| Homo sapiens chromosome , clone RP11-453M23, complete sequence Length = 189706 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 aaagacagtaatacaagcaaaaaa 83 ||||||||||| |||||||||||| Sbjct: 95313 aaagacagtaaaacaagcaaaaaa 95290
>emb|BX005425.12| Zebrafish DNA sequence from clone DKEY-7O6 in linkage group 8, complete sequence Length = 252440 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 taagcgtcttatttttggat 284 |||||||||||||||||||| Sbjct: 198253 taagcgtcttatttttggat 198234
>gb|AC048352.18| Homo sapiens 12 BAC RP11-871F6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 216792 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 tagtattagcataattcacc 112 |||||||||||||||||||| Sbjct: 141811 tagtattagcataattcacc 141830
>gb|AC079596.11| Homo sapiens 12 BAC RP11-632N20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 103998 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 agtatgtatatatattgtat 35 |||||||||||||||||||| Sbjct: 102486 agtatgtatatatattgtat 102467
>gb|AC093122.12| Homo sapiens 12 BAC RP11-317E2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 108125 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 agtatgtatatatattgtat 35 |||||||||||||||||||| Sbjct: 107633 agtatgtatatatattgtat 107652
>gb|AC106727.5| Homo sapiens 3q BAC RP11-534K3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 153692 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tgtatatatattgtattata 39 |||||||||||||||||||| Sbjct: 89298 tgtatatatattgtattata 89317
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 gatgccgaggaagaccttgg 430 |||||||||||||||||||| Sbjct: 1290667 gatgccgaggaagaccttgg 1290648
>gb|AC023538.7| Homo sapiens chromosome 8, clone RP11-510I21, complete sequence Length = 189543 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 tgtatatatattgtattata 39 |||||||||||||||||||| Sbjct: 64400 tgtatatatattgtattata 64381
>gb|AC022039.7| Homo sapiens chromosome 8, clone RP11-3G21, complete sequence Length = 176815 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tgtatatatattgtattata 39 |||||||||||||||||||| Sbjct: 18333 tgtatatatattgtattata 18352
>gb|AC091108.5| Homo sapiens chromosome 18, clone RP11-765H19, complete sequence Length = 164790 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 aaagacagtaatacaagcaaaaaa 83 ||||||||||| |||||||||||| Sbjct: 156481 aaagacagtaaaacaagcaaaaaa 156504
>gb|AC026398.5| Homo sapiens chromosome 5 clone CTB-127M13, complete sequence Length = 88783 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 tatgtatatatattgtatta 37 |||||||||||||||||||| Sbjct: 17497 tatgtatatatattgtatta 17478
>gb|BC097918.1| Xenopus laevis cDNA clone IMAGE:6868144, partial cds Length = 2407 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 41 taaaagcaaaacattttgcaaaga 64 ||||||| |||||||||||||||| Sbjct: 1852 taaaagctaaacattttgcaaaga 1875
>emb|BX470254.7| Zebrafish DNA sequence from clone CH211-256M1 in linkage group 3, complete sequence Length = 146746 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 gtatgtatatatattgtatt 36 |||||||||||||||||||| Sbjct: 21726 gtatgtatatatattgtatt 21745
>gb|AC008220.5|AC008220 Drosophila melanogaster, chromosome 3R, region 100B-100C, BAC clone BACR11C03, complete sequence Length = 186549 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 atgtatatatattgtattatagta 42 |||||||||||||||| ||||||| Sbjct: 50076 atgtatatatattgtagtatagta 50053
>gb|AC007975.7|AC007975 Drosophila melanogaster, chromosome 3R, region 100A-100B, BAC clone BACR06P08, complete sequence Length = 180630 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 atgtatatatattgtattatagta 42 |||||||||||||||| ||||||| Sbjct: 172123 atgtatatatattgtagtatagta 172100
>gb|AE014844.1| Plasmodium falciparum 3D7 chromosome 12, section 1 of 9 of the complete sequence Length = 251551 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 16 agtatgtatatatattgtattata 39 |||||||||||||||| ||||||| Sbjct: 108821 agtatgtatatatattatattata 108844
>emb|BX255877.14| Zebrafish DNA sequence from clone CH211-254C9, complete sequence Length = 152976 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 agtaaaagcaaaacattttgcaaa 62 ||||||||||||||||||| |||| Sbjct: 104068 agtaaaagcaaaacattttacaaa 104091
>emb|BX571894.9| Mouse DNA sequence from clone RP23-203N8 on chromosome 2, complete sequence Length = 101718 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tgtatatatattgtattata 39 |||||||||||||||||||| Sbjct: 13434 tgtatatatattgtattata 13453
>gb|AC006034.2|AC006034 Homo sapiens BAC clone RP11-144M13 from 7p11.2-p21, complete sequence Length = 56479 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 taattcaccccaaaatacaa 123 |||||||||||||||||||| Sbjct: 26527 taattcaccccaaaatacaa 26508
>emb|BX539323.11| Zebrafish DNA sequence from clone DKEY-58P11 in linkage group 19, complete sequence Length = 87362 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 tgtatatatattgtattata 39 |||||||||||||||||||| Sbjct: 48345 tgtatatatattgtattata 48326
>gb|AE003776.2| Drosophila melanogaster chromosome 3R, section 114 of 118 of the complete sequence Length = 225764 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 atgtatatatattgtattatagta 42 |||||||||||||||| ||||||| Sbjct: 166749 atgtatatatattgtagtatagta 166726
>emb|AL121767.6|CNS01DSC Human chromosome 14 DNA sequence BAC C-2593I21 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 208309 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 agtaatacaagcaaaaaaga 85 |||||||||||||||||||| Sbjct: 57927 agtaatacaagcaaaaaaga 57946
>emb|CR846103.8| Zebrafish DNA sequence from clone DKEY-28K9 in linkage group 3, complete sequence Length = 54792 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 gtatgtatatatattgtatt 36 |||||||||||||||||||| Sbjct: 33067 gtatgtatatatattgtatt 33048
>emb|AL772421.5|CNS08C9Z Oryza sativa chromosome 12, . BAC OJ1007_A12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 130672 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 ataattcaccccaaaatacaacga 126 ||||||||||||||| |||||||| Sbjct: 53491 ataattcaccccaaattacaacga 53514
>emb|AL732360.12| Mouse DNA sequence from clone RP23-405B14 on chromosome X, complete sequence Length = 197398 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 atgtagtatgtatatatatt 31 |||||||||||||||||||| Sbjct: 124715 atgtagtatgtatatatatt 124734
>emb|CR854921.10| Zebrafish DNA sequence from clone DKEY-287M23 in linkage group 3, complete sequence Length = 19549 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 gtatgtatatatattgtatt 36 |||||||||||||||||||| Sbjct: 8103 gtatgtatatatattgtatt 8122
>emb|AL929017.9| Zebrafish DNA sequence from clone DKEY-4C15 in linkage group 20, complete sequence Length = 208922 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 gaatgtagtatgtatatata 29 |||||||||||||||||||| Sbjct: 103585 gaatgtagtatgtatatata 103604
>dbj|AP006535.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT02D13, TM0546, complete sequence Length = 107979 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 56 ttgcaaagacagtaatacaagcaa 79 |||||||| ||||||||||||||| Sbjct: 77962 ttgcaaagccagtaatacaagcaa 77985
>gb|AC154809.2| Mus musculus BAC clone RP24-528G7 from chromosome 16, complete sequence Length = 191524 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 tatatattgtattatagtaa 43 |||||||||||||||||||| Sbjct: 83535 tatatattgtattatagtaa 83516
>emb|AL772320.12| Mouse DNA sequence from clone RP23-346F2 on chromosome 4, complete sequence Length = 211321 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 agtatgtatatatattgtat 35 |||||||||||||||||||| Sbjct: 106200 agtatgtatatatattgtat 106219 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,923,406 Number of Sequences: 3902068 Number of extensions: 4923406 Number of successful extensions: 148041 Number of sequences better than 10.0: 120 Number of HSP's better than 10.0 without gapping: 124 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 147156 Number of HSP's gapped (non-prelim): 885 length of query: 448 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 426 effective length of database: 17,147,199,772 effective search space: 7304707102872 effective search space used: 7304707102872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)