ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet70b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NRAM2_MOUSE (P49282) Natural resistance-associated macrophage pr... 30 2.3

>NRAM2_MOUSE (P49282) Natural resistance-associated macrophage protein 2 (NRAMP|
           2)
          Length = 568

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
 Frame = +3

Query: 9   KPNRTYTLHFKFPPKLPGCVHDM---------TVHHPHHS*TLHGSKH*LTKTHSIGREN 161
           KP+++  L   F P  PGC              V  PH+   LH +   L K+  + R N
Sbjct: 230 KPSQSQVLRGMFVPSCPGCRTPQVEQAVGIVGAVIMPHNM-YLHSA---LVKSRQVNRAN 285

Query: 162 KQQARAASR 188
           KQ+ R A++
Sbjct: 286 KQEVREANK 294


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,389,847
Number of Sequences: 219361
Number of extensions: 438482
Number of successful extensions: 841
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 80,573,946
effective HSP length: 39
effective length of database: 72,018,867
effective search space used: 1728452808
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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