ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet70b09 |
|---|---|
| Clone Library Name | barley_pub |
>PEVR2_HUMAN (Q9NWF4) Porcine endogenous retrovirus A receptor 2 precursor| (PERV-A receptor 2) (Protein GPR172B) Length = 448 Score = 31.6 bits (70), Expect = 0.56 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = +3 Query: 57 LTGKTILASACCTQSISFIPSFASVCCPQRISFIIG 164 LT +LA ACCT +++F+P + + P SF +G Sbjct: 115 LTLALVLAMACCTSNVTFLPFLSHLPPPFLRSFFLG 150
>PEVR2_PAPHA (Q863Y8) Porcine endogenous retrovirus A receptor 2 precursor| (PERV-A receptor 2) (Protein GPR172B) Length = 448 Score = 31.2 bits (69), Expect = 0.73 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = +3 Query: 57 LTGKTILASACCTQSISFIPSFASVCCPQRISFIIG 164 LT +LA ACCT +++F+P + + P SF +G Sbjct: 115 LTLALVLALACCTSNVTFLPFLSHLPPPFLRSFFLG 150
>ASCD_YERPE (P68641) CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase| reductase (CDP-6-deoxy-delta-3,4-glucoseen reductase) (EC 1.17.1.-) (E3) Length = 328 Score = 30.8 bits (68), Expect = 0.95 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = +2 Query: 17 LETEAQWYLSMIHTNRKNYPC-IRMLHTIDKFYSILCIRMLPTA 145 +E + +Y + H +K YPC + + I + +IL +R+ PTA Sbjct: 82 IELDVNYYPELSHIQKKTYPCKLDSIEFIGEDIAILSLRLPPTA 125
>ASCD_YERPS (Q66DP5) CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase| reductase (CDP-6-deoxy-delta-3,4-glucoseen reductase) (EC 1.17.1.-) (E3) Length = 328 Score = 30.4 bits (67), Expect = 1.2 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = +2 Query: 17 LETEAQWYLSMIHTNRKNYPC-IRMLHTIDKFYSILCIRMLPTA 145 +E + +Y + H +K YPC + + + + +IL +R+ PTA Sbjct: 82 IELDVNYYPELSHIQKKTYPCKLDSIEFVGEDIAILSLRLPPTA 125
>PRS6A_SCHPO (O14126) 26S protease regulatory subunit 6A| Length = 438 Score = 30.4 bits (67), Expect = 1.2 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +3 Query: 60 TGKTILASACCTQSISFIPSFASVCCPQRISFIIGFNA 173 TGKT+LA AC QS + +F + PQ + IG A Sbjct: 230 TGKTLLARACAAQSNA---TFLKLAAPQLVQMFIGDGA 264
>STUB_DROME (Q05319) Serine proteinase stubble (EC 3.4.21.-) (Protein| stubble-stubbloid) [Contains: Serine proteinase stubble non-catalytic chain; Serine proteinase stubble catalytic chain] Length = 787 Score = 30.0 bits (66), Expect = 1.6 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +3 Query: 57 LTGKTILASACCTQSISFIPSFASVCCPQRISFIIGFNAT 176 LT + LA Q + F P + +C P+ S +IG NAT Sbjct: 635 LTYEYDLALVKLEQPLEFAPHVSPICLPETDSLLIGMNAT 674
>PRKDC_HUMAN (P78527) DNA-dependent protein kinase catalytic subunit (EC 2.7.11.1)| (DNA-PK catalytic subunit) (DNA-PKcs) (DNPK1) (p460) Length = 4128 Score = 30.0 bits (66), Expect = 1.6 Identities = 13/47 (27%), Positives = 23/47 (48%) Frame = -3 Query: 238 FTYFPDFCVCTPHVKCWAACVVALNPIIKLIRCGQHTDAKDGIKLID 98 F++FP F C + C A +++L+P C GI+L++ Sbjct: 2848 FSFFPPFVSCIQDISCQHAALLSLDPAAVSAGCLASLQQPVGIRLLE 2894
>PEVR2_MOUSE (Q9D8F3) Porcine endogenous retrovirus A receptor 2 homolog| precursor (PERV-A receptor 2 homolog) (Protein GPR172B) Length = 450 Score = 29.3 bits (64), Expect = 2.8 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +3 Query: 42 YQ*YILTGKTILASACCTQSISFIPSFASVCCPQRISFIIG 164 Y LT +LA ACC +++F+P + + P SF +G Sbjct: 110 YSVAFLTLAFVLALACCASNVTFLPFLSHLPPPFLRSFFLG 150
>ZNF43_HUMAN (P17038) Zinc finger protein 43 (Zinc protein HTF6) (Zinc finger| protein KOX27) Length = 803 Score = 29.3 bits (64), Expect = 2.8 Identities = 17/55 (30%), Positives = 27/55 (49%) Frame = +2 Query: 50 IHTNRKNYPCIRMLHTIDKFYSILCIRMLPTADKFYNRV*CDHTSCPTFYMRSTH 214 IHT K Y C ++F ++ + + TA+KFY C T C + RS++ Sbjct: 329 IHTGEKPYTCEECGKAFNQFSNLTTHKRIHTAEKFYK---C--TECGEAFSRSSN 378
>T1SG_MYCPN (P75492) Putative type I restriction enzyme specificity protein| MPN285 (S protein) (S.MpnORFGP) (A65_orf306) Length = 306 Score = 29.3 bits (64), Expect = 2.8 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 2/53 (3%) Frame = -2 Query: 212 VYSSCKMLGSLCGRIKPY--YKTYPLWATYGCKGWNKTYRLCATCGCKDSFSC 60 VYSS G L G+I Y + Y W T G N YR + FSC Sbjct: 148 VYSSATTNGGLIGKINDYDFHGEYVTWTTGGAHAGNVFYR-------NEKFSC 193
>PRS6A_YEAST (P33297) 26S protease regulatory subunit 6A (TAT-binding protein| homolog 1) (TBP-1) Length = 434 Score = 28.9 bits (63), Expect = 3.6 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +3 Query: 60 TGKTILASACCTQSISFIPSFASVCCPQRISFIIGFNA 173 TGKT+LA AC Q+ + +F + PQ + IG A Sbjct: 226 TGKTLLARACAAQTNA---TFLKLAAPQLVQMYIGEGA 260
>ZN600_HUMAN (Q6ZNG1) Zinc finger protein 600| Length = 722 Score = 28.1 bits (61), Expect = 6.2 Identities = 19/63 (30%), Positives = 25/63 (39%) Frame = +2 Query: 50 IHTNRKNYPCIRMLHTIDKFYSILCIRMLPTADKFYNRV*CDHTSCPTFYMRSTHTKIWE 229 IHT K Y C T S++C L +K Y CD ++ HT+I Sbjct: 351 IHTGEKTYKCNECGKTFSHKSSLVCHHRLHGGEKSYKCKVCDKAFAWNSHL-VRHTRIHS 409 Query: 230 IGK 238 GK Sbjct: 410 GGK 412
>PURA_BRUSU (P65879) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 429 Score = 28.1 bits (61), Expect = 6.2 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%) Frame = -2 Query: 173 RIKPYYKTYPLWA--TYGCKGWN 111 R+KP Y+T P W+ T G + WN Sbjct: 365 RVKPIYETLPGWSETTAGARSWN 387
>PURA_BRUME (P65878) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 429 Score = 28.1 bits (61), Expect = 6.2 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%) Frame = -2 Query: 173 RIKPYYKTYPLWA--TYGCKGWN 111 R+KP Y+T P W+ T G + WN Sbjct: 365 RVKPIYETLPGWSETTAGARSWN 387
>PURA_BRUAB (P0C115) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 429 Score = 28.1 bits (61), Expect = 6.2 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%) Frame = -2 Query: 173 RIKPYYKTYPLWA--TYGCKGWN 111 R+KP Y+T P W+ T G + WN Sbjct: 365 RVKPIYETLPGWSETTAGARSWN 387
>PURA_BRUA2 (Q2YQI5) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 429 Score = 28.1 bits (61), Expect = 6.2 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%) Frame = -2 Query: 173 RIKPYYKTYPLWA--TYGCKGWN 111 R+KP Y+T P W+ T G + WN Sbjct: 365 RVKPIYETLPGWSETTAGARSWN 387
>PR6AA_XENLA (O42587) 26S protease regulatory subunit 6A-A (TAT-binding protein| 6) (TBP-6) Length = 405 Score = 28.1 bits (61), Expect = 6.2 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +3 Query: 60 TGKTILASACCTQSISFIPSFASVCCPQRISFIIGFNA 173 TGKT+LA AC Q+ + +F + PQ + IG A Sbjct: 215 TGKTLLARACAAQTKA---TFLKLAGPQLVQMFIGDGA 249
>PRS6A_MOUSE (O88685) 26S protease regulatory subunit 6A (TAT-binding protein 1)| (TBP-1) Length = 442 Score = 28.1 bits (61), Expect = 6.2 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +3 Query: 60 TGKTILASACCTQSISFIPSFASVCCPQRISFIIGFNA 173 TGKT+LA AC Q+ + +F + PQ + IG A Sbjct: 234 TGKTLLARACAAQTKA---TFLKLAGPQLVQMFIGDGA 268
>PRS6A_RAT (Q63569) 26S protease regulatory subunit 6A (TAT-binding protein 1)| (TBP-1) (Spermatogenic cell/sperm-associated TAT-binding protein homolog SATA) Length = 439 Score = 28.1 bits (61), Expect = 6.2 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +3 Query: 60 TGKTILASACCTQSISFIPSFASVCCPQRISFIIGFNA 173 TGKT+LA AC Q+ + +F + PQ + IG A Sbjct: 231 TGKTLLARACAAQTKA---TFLKLAGPQLVQMFIGDGA 265
>PRS6A_HUMAN (P17980) 26S protease regulatory subunit 6A (TAT-binding protein 1)| (TBP-1) (Proteasome subunit P50) Length = 439 Score = 28.1 bits (61), Expect = 6.2 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +3 Query: 60 TGKTILASACCTQSISFIPSFASVCCPQRISFIIGFNA 173 TGKT+LA AC Q+ + +F + PQ + IG A Sbjct: 231 TGKTLLARACAAQTKA---TFLKLAGPQLVQMFIGDGA 265
>PR6AB_XENLA (O42586) 26S protease regulatory subunit 6A-B (TAT-binding protein| 10) (TBP-10) Length = 404 Score = 28.1 bits (61), Expect = 6.2 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +3 Query: 60 TGKTILASACCTQSISFIPSFASVCCPQRISFIIGFNA 173 TGKT+LA AC Q+ + +F + PQ + IG A Sbjct: 196 TGKTLLARACAAQTKA---TFLKLAGPQLVQMFIGDGA 230 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,547,439 Number of Sequences: 219361 Number of extensions: 811308 Number of successful extensions: 2123 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 1979 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2120 length of database: 80,573,946 effective HSP length: 63 effective length of database: 66,754,203 effective search space used: 1602100872 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
